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Anopheles gambiae
cluster # 8960 cluster # 8960       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8960#0 length = 1345 sequences # 7  
consensus_8960#1 length = 954 sequences # 3  
consensus_8960#2 length = 944 sequences # 3  

consensusID : consensus_8960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1345
fasta sequence
                              [TACTCTTCGGATTTGGTTGAAGCGAGAAAGCTCTAAAATGCTCGGGAAAAAGGAAATGTGGAACTTTGAACTATTTTTCCCCTAAATTTCAACATCCCTACCTTCTTAAAGTGCACTTGTAGTAGAGTATTACACAAATCAACTTTTGTCTTTATTTTGTCTACATCGTACGGGAATAACCCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGGGTTGTAGTTGAGCGGCAGTTGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCTCGTGTGCTTGTTGG-CCACATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGGGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATACTGATACTCTTCGCCGGTGGTTGGGCGGGCCGAGGTAGACTGGCTACGGGCGAGACATGCAAGCCATTGCGTTTTCGGTACACGTAACATGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGACGACACCCCGC-GCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACGAAGCTTTGAACTCGCGTAATCTTATCAAACCACAGACACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCAGAAATACGGTCGAAAAGATTAAACTACAAAACTAGACAACGGGCATTAATCCCGGGGGTGGTGGAGCAGATATGTATCGTGCGGC]

[+] EMBL CNS08GZ9             [TACTCTTCGGATTTGGTTGAAGCGAGAAAGCTCTAAAATGCTCGGGAAAAAGGAAATGTGGAACTTTGAACTATTTTTCCCCTAAATTTCAACATCCCTACCTTCTTAAAGTGCACTTGTAGTAGAGTATTACACAAATCAACTTTTGTCTTTATTTTGTCTACATCGTACGGGAATAACCCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCAATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS0967M             [                                                                                                                                         ATGAAGTTTTGTCTTTATTTTGTCTACATCGTACGGGAATAACCCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATTCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGGGTTGTAGTTGAGCGGCAGTTGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCTCGTGTGCTTTTTGG CCACATCGAACTCCTTCAGCAGTTTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGGGCGATAGGAGTGGCTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CNS095H5             [                                                                                                                                                            aTGTCTACATCGTACGGGAATAACCCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGGGTTGTAGTTGAGCGGCAGTTGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCTCGTGTGCTTGTTGGCCCGCATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGGGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATACTGATACTCTTCGCCGGTGGTTGGGCGGGCCGAGGTAGACTGGCTACGGGCGATACATTCAAGCCATTGCGTTTTCGGTACACGTAACATGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAAT                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CNS095H4             [                                                                                                                                                                                                                                                                                                                                                                                   tGCCGCAAAAACCTTGCCAATGTCCTCGTAAAAAACCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGGGTTGTAGTTGAGCGGCAGTGGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCTCGTGTGCTTGTTGG CCGCATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGGGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATACTGATACTCTTCGCCGGTGGTTGGGCGGGCCGAGGTAGACTGGCTACGGGCGAGACATGCAAGCCATTGCGTTTTCGGTACACGTAACATGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGACGACACCCCGC GCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACGAAGCTTTGAACTCGCGTAATCTTATCAAACCACAGACACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCAGAAATACGGTCGAAAAGATTAAAC                                                             ]
[-] EMBL CNS0967L             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGGGTTGTAGTTGAGCGGCAGTGGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCTCGTGTGCTTGTTGG CCACATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGGGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATACTGATACTCTTCGCCGGTGGTTGGGCGGGCCGAGGTAGACTGGCTACGGGCGAGACATGCAAGCCATTGCGTTTTCGGTACACGTAACATGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGACGACACCCCGC GCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACGAAGCTTTGCACTCGCGTAATCTTATCAAACCACAGACACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCAAAAATACGGTCGAAAAGATTAAACTACAAAACTAGACAACGGGCATTAATCCCGGGGGTGGTGGAGCAGATATGTATCGTGCGGC]
[-] EMBL AGA284873            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACATGCAAGCCATTGCGTTTTCGGTACACGTAACATGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGACGACACCCCGC GCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACGAAGCTT                                                                                                                                                         ]
[-] EMBL CNS090XL             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTAAGGCACTACGACGACACCCCGCAGCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCAATTGATTTCACTTGT                                                                                                                                                                                         ]


>consensus_8960#0 TACTCTTCGGATTTGGTTGAAGCGAGAAAGCTCTAAAATGCTCGGGAAAAAGGAAATGTG GAACTTTGAACTATTTTTCCCCTAAATTTCAACATCCCTACCTTCTTAAAGTGCACTTGT AGTAGAGTATTACACAAATCAACTTTTGTCTTTATTTTGTCTACATCGTACGGGAATAAC CCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTC GCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTA CTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGC GCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCG ACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCG TCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCC AGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATAC GCCGGATCTTCGTACAGTGGGTTGTAGTTGAGCGGCAGTTGTGCCCGATCTCGCAGGTAC ATATCGAACCACGGTTCGGAGATGTAGCTCGTGTGCTTGTTGGCCACATCGAACTCCTTC AGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTG CGCTCAAATGCATCGGGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTT TTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGAGCATCGGTATC TTGGACCGCTGCAGATACTGATACTCTTCGCCGGTGGTTGGGCGGGCCGAGGTAGACTGG CTACGGGCGAGACATGCAAGCCATTGCGTTTTCGGTACACGTAACATGGTTGGGGACAGT TCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGACGACACCCCGCGCA CAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCAC CTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACGAAGCTTTGAACTCG CGTAATCTTATCAAACCACAGACACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCA GAAATACGGTCGAAAAGATTAAACTACAAAACTAGACAACGGGCATTAATCCCGGGGGTG GTGGAGCAGATATGTATCGTGCGGC



consensusID : consensus_8960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 954
fasta sequence
                              [ATTTACTCTTCGGATTTGGTTGAAGCGAGAGAGCTCTAAAATGCTCGGGAAAAAGGAAATGTGGAACTTTGAACTATTTTTCCCCTAAATTTCAACATCCCTACCTTCTTAAAGTGCACTTGTAGTAGAGTATTACACAAATCAACTTTTGTCTTTATTTTGTCTACATCGTACGGGAATAACCCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGCCGGCAGTGGCAAACCGTTCCTCTGCGCCGTATGCTTCAGCCCGAACAGATGCCTATCGAACCCTTGCCCCATGGCCGCTTCCTTCGTCAGCTGACCGTGCACCGTCGAGCATTGGTTCATCATGTCGCGCA-CTCGGCCATGCTTTTCTTCTTGCCCGAATCGCGCCGCTCCACCTCCTGGCAGAACGCTTTCGTCGCGACCGTGCACGGCCGCATCGTTTCCGTGCGCCCGTGCCGGAAGG-GGCCGTACTGCACGATTCGTACGTGCCCACGAACGCACCTTGCTGCTTGTAGTAGGCCAGCTGAAAGCCGAGCTGCATCACCGAGTCCGG]

[+] EMBL CNS08W5G             [ATTTACTCTTCGGATTTGGTTGAAGCGAGAGAGCTCTAAAATGCTCGGGAAAAAGGAAATGTGGAACTTTGAACTATTTTTCCCCTAAATTTCAACATCCCTACCTTCTTAAAGTGCACTTGTAGTAGAGTATTACACAAATCAACTTTTGTCTTTATTTTGTCTACATCGTACGGGAATAACCCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGCCGGCAGTGGCAAACCGTTCCTCTGCGCCGTATGCTTCAGCCCGAACAGATGCCTATCGAACCCTTGCCCCATGGCCGCTTCCTTCGTCAGCTGACCGTGCACCGTCGAGCATTGGTTCATCATGTCGCGCA CTCGGCCATGCTTTTCTTCTTGCCCGAATCGCGCCGCTCCACCTCCTGGCAGAACGCTTTCGTCGCGACCGTGCACGGCCGCATCGTTTCCGTGCGCCCGTGCCGGAAGG GGCCGTACTGCACGATTCGTACGTGCCCACGAACGCACCTTGCTGC                                            ]
[+] EMBL AGA281909            [                                                                                                                                                                                                           AAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BX628165             [                                                                                                                                                                                                                                      TAACGGGATTTTCGCTCTTAAACATTCAACCNTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAGTCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCATACGCCGGATCTTCGTACAGTGCCGGCAGTGGCAAACCGTTCCTCTGCGCCGTATGCTTCAGCCCGAACAGATGCCTATCGAACCCTTGCCCCATGGCCGCTTCCTTCGTCAGCTGACCGTGCACCGTCGAGCATTGGTTCATCATGTCGCGCAGCTCGGCCATGCTTTTCTTCTTGCCCGAATCGCGCCGCTCCACCTCCTGGCAGAACGCTTTCGTCGCGACCGTGCACGGCCGCATCGTTTCCGTGCGCCCGTGCCGGAAGGCGGCCGTACTGCACGATTCGTACGTGCCCACGAACGCACCGTGCTGCTTGTAGTAGGCCAGCTGAAAGCCGAGCTGCATCACCGAGTCCGG]


>consensus_8960#1 ATTTACTCTTCGGATTTGGTTGAAGCGAGAGAGCTCTAAAATGCTCGGGAAAAAGGAAAT GTGGAACTTTGAACTATTTTTCCCCTAAATTTCAACATCCCTACCTTCTTAAAGTGCACT TGTAGTAGAGTATTACACAAATCAACTTTTGTCTTTATTTTGTCTACATCGTACGGGAAT AACCCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATT TTCGCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCA GTACTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATCACTTTTCCTTA GGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACAG TCGACAAATTCGCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTAC CCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCG GCCAGCAGGGCGGGCGAAGAGAGCGTACTGGTCGACAGGATGTTATGGTTAATCGCACCA TACGCCGGATCTTCGTACAGTGCCGGCAGTGGCAAACCGTTCCTCTGCGCCGTATGCTTC AGCCCGAACAGATGCCTATCGAACCCTTGCCCCATGGCCGCTTCCTTCGTCAGCTGACCG TGCACCGTCGAGCATTGGTTCATCATGTCGCGCACTCGGCCATGCTTTTCTTCTTGCCCG AATCGCGCCGCTCCACCTCCTGGCAGAACGCTTTCGTCGCGACCGTGCACGGCCGCATCG TTTCCGTGCGCCCGTGCCGGAAGGGGCCGTACTGCACGATTCGTACGTGCCCACGAACGC ACCTTGCTGCTTGTAGTAGGCCAGCTGAAAGCCGAGCTGCATCACCGAGTCCGG



consensusID : consensus_8960#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 944
fasta sequence
                              [CCCCGAACAGTCCCTGATACTGGCTCATATCGAGCGGGAACGCCTTGAACGCGTACGCCACGTACGTCGAGATGAAGGACGGCATCATGGAAGTGACCGTCCGGAACATGGGCGTGTCGCTTTTCGCCGGATTCATGTGAAACACTTCCGGCTCGAGGATTTTTGCCCGCAACGATTTCATGAAGCGCAGCGAGCTAATCACCAAATTGGTCGTACGCAGCAGCTGATCGTTAAACTGCGGCCGCGGGTCGGGATTCATCATCAGCAGTGGGTTGTAGTTGAGCGGCAGTGGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCCCGTGTGCTTGTTGGCCGCATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGCGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATAGCTGATACTCTTCGCCGGTGGTTGGGCGGGCCGAGGTAGACTGGCTACGGGCGGAGACATGCAAGCCATTGCGTTTTCGGTACACGTAACATGGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGACGACACCCCGCGCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACGAAGCTTTGAACTCGCGTAATCTTATCAAACCACAGACACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCAAAAATACGGTCGAAAAGATTAAACTACAAA]

[-] EMBL AGA280213            [CCCCGAACAGTCCCTGATACTGGCTCATATCGAGCGGGAACGCCTTGAACGCGTACGCCACGTACGTCGAGATGAAGGACGGCATCATGGAAGTGACCGTCCGGAACATGGGCGTGTCGCTTTTCGCCGGATTCATGTGAAACACTTCCGGCTCGAGGATTTTTGCCCGCAACGATTTCATGAAGCGCAGCGAGCTAATCACCAAATTGGTCGTACGCAGCAGCTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CNS08W5F             [                            ATCGAGCGGGAACGCCTTGAACGCGTACGCCACGTACGAAGAGATGAAGGACGGCATCATGGAAGTGACCGTCCGGAACATGGGCGTGTCGCTTTTCGCCGGATTCATGTGAAACACTTCCGGCTCGAGGATTTTTGCCCGCAACGATTTCATGAAGCGCAGCGAGCTAATCACCAAATTGGTCGTACGCAGCAGCTGATCGTTAAACTGCGGCCGCGGGTCGGGATTCATCATCAGCAGTGGGTTGTAGTTGAGCGGCAGTGGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCCCGTGTGCTTGTTGGCCGCATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGCGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATAGCTGATACTCTTCGCCGGTGGTTGGGCGGGCCGAGGTAGACTGGCTACGGGCGGAGACATGCAAGCCATTGCGTTTTCGGTACACGTAACATGGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGACGACACCCCGCGCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACGAAGCTTTGAACTCGCGTAATCTTATCAAACCACAGACACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCAAAAATACGGTCGAAAAGATTAAACTACAAA]
[+] EMBL AGA283584            [                                                                                                                                                                                                                                                              TTCATCATCAGCAGTGGGTTGTAGTTGAGCGGCAGTGGTGCCCGATCTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCTCGTGTGCTTGTTGGCCGCATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCAGCTCCTTCGTGCGCTCAAATGCATCGGGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_8960#2 CCCCGAACAGTCCCTGATACTGGCTCATATCGAGCGGGAACGCCTTGAACGCGTACGCCA CGTACGTCGAGATGAAGGACGGCATCATGGAAGTGACCGTCCGGAACATGGGCGTGTCGC TTTTCGCCGGATTCATGTGAAACACTTCCGGCTCGAGGATTTTTGCCCGCAACGATTTCA TGAAGCGCAGCGAGCTAATCACCAAATTGGTCGTACGCAGCAGCTGATCGTTAAACTGCG GCCGCGGGTCGGGATTCATCATCAGCAGTGGGTTGTAGTTGAGCGGCAGTGGTGCCCGAT CTCGCAGGTACATATCGAACCACGGTTCGGAGATGTAGCCCGTGTGCTTGTTGGCCGCAT CGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTTGACCA GCTCCTTCGTGCGCTCAAATGCATCGCGCGATAGGAGTGGCTGCTGAGCGGCCAGATAGC GGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAGGGAGGGTTGAAAGTGGA GCATCGGTATCTTGGACCGCTGCAGATAGCTGATACTCTTCGCCGGTGGTTGGGCGGGCC GAGGTAGACTGGCTACGGGCGGAGACATGCAAGCCATTGCGTTTTCGGTACACGTAACAT GGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGTATAAAATTAAGGCACTACGA CGACACCCCGCGCACAATGCACTGTGTTAAACGAATGAATGGAGCTGTGTGCTGTCTCTC GGTTCAAAGTTCACCTTCCTTTGATTTCACTTGTACAGTGGAGGAATACAACAGGTGACG AAGCTTTGAACTCGCGTAATCTTATCAAACCACAGACACACAAAAAAGAAGGAGCAATGT TACACCAAGAACCAAAAATACGGTCGAAAAGATTAAACTACAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8960#0      TACTCTTCGGATTTGGTTGAAGCGAGAAAGCTCTAAAATGCTCGGGAAAAAGGAAATGTG 60
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GAACTTTGAACTATTTTTCCCCTAAATTTCAACATCCCTACCTTCTTAAAGTGCACTTGT 120
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      AGTAGAGTATTACACAAATCAACTTTTGTCTTTATTTTGTCTACATCGTACGGGAATAAC 180
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      CCATTAGATAAACTATCCCAAAAACCAACACAGCTAAAATACAAAATTAACGGGATTTTC 240
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GCTCTTAAACATTCAACCCTTCAAGCTTTTTTTCGGCAACAATAATCAATTTGCTCAGTA 300
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      CTGTTGTTGCCTCTCTCTCTCTCGCTGTCTGCCTCTGTTTTCAATC--ACTTTT--CCTT 356
consensus_8960#2      --------------------------------------CCCCGAAC--AGTCCC--TGAT 18
consensus_8960#1      -------------------------------ATTTACTCTTCGGATTTGGTTGAAGCGAG 29
                                                               *        *         

consensus_8960#0      AGGCGCTGGCCCGGTGGCGGCCAACACCTTGCCAATGTCCTCGTACGCCGCCCGCAGACA 416
consensus_8960#2      ACTGGCTCATATCGAGCGGG--AACGCCTTG--AACG----CGTACGCCACGTACGTCGA 70
consensus_8960#1      AGAGCTCTAAAATGCTCGGGAAAAAGGAAATGTGGAACTTTGAACTATTTTTCCCCTAAA 89
                      *            *    **  **                              *    *

consensus_8960#0      GTCGACAAATTCGCGCCCATTCCGGTG-CGGTTTGTAGC-----TCGTCACGACGCTGCC 470
consensus_8960#2      GATGAAGGA--CGGCATCATGGAAGTGACCGTCCGGAACA----TGGGCGTGTCGCTTTT 124
consensus_8960#1      TTTCAACATCCCTACCTTCTTAAAGTGCACTTGTAGTAGAGTATTACACAAATCAACTTT 149
                          *      *       *    ***    *            *   *    *      

consensus_8960#0      CAA-GTACCCGTCCTGGATGTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAA 529
consensus_8960#2      CGCCGGATTCATGTGAAACACT---TCCGGCTCGAGGATTTTTGCCCGCAACGATTTCAT 181
consensus_8960#1      TGT---CTTTATTTTGTCTACATCGTACGGGAATAACCCATTAGATA--AACTATCCCAA 204
                                 *               **     *      *       ***     ** 

consensus_8960#0      ATCCACCGGCCAGCAGGGCGGGCGAAGAGAGCGTACTGG-TCGACAGGATGTTATGGT-T 587
consensus_8960#2      GAAGCGCAGCGAGCTAATCAC-CAAATTGGTCGTACGCA-GCAGCTGATCGTTAAACTGC 239
consensus_8960#1      AAACCAACACAGCTAAAATAC-AAAATTAACGGGATTTTCGCTCTTAAACATTCAACC-- 261
                               *              **      * *      *         **       

consensus_8960#0      AATCGCACCATACGCCGGATCTTCGTACAGTGGGTTGTAGTTGAGCGGCAGTTGTGCCCG 647
consensus_8960#2      GGCCGCGGGTCGGGATTCATCATCA-GCAGTGGGTTGTAGTTGAGCGGCAGTGGTGCCCG 298
consensus_8960#1      --CTTCAAGCTTTTTTTCGGCAACA-ATAATCAATTT--GCTCAGTACTGTTGTTGCCTC 316
                           *              *  *    * *   **   * * **      *  ****  

consensus_8960#0      ATCTCGCAGGTACATATCGAACCACGGTTCGGA--GATGTAGCTCGTGTGCTTGTT-GGC 704
consensus_8960#2      ATCTCGCAGGTACATATCGAACCACGGTTCGGA--GATGTAGCCCGTGTGCTTGTT-GGC 355
consensus_8960#1      -TCTCTCTCTCGC-TGTCTGCCTCTGTTTTCAATCACTTTTCCTTAGGCGCTGGCCCGGT 374
                       **** *     * * **   *   * **   *    * *  *    * *** *   ** 

consensus_8960#0      CACATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTT 764
consensus_8960#2      CGCATCGAACTCCTTCAGCAGTGTCTGCAGCTTCGGTCCGTCCTGCCGGGAGAACTGGTT 415
consensus_8960#1      GGCGGCCAACACCTT-GCCAATGTCCTCGTACGCCGCCCG--CAGACAGTCGACAAATTC 431
                        *  * *** ****   ** ****  *     * * ***  * * * *  **     * 

consensus_8960#0      G-ACCAGCTCCTTCGTGCGCTCAAATGCATCGGGCGATAG---GAGTGGCTG--CTGAGC 818
consensus_8960#2      G-ACCAGCTCCTTCGTGCGCTCAAATGCATCGCGCGATAG---GAGTGGCTG--CTGAGC 469
consensus_8960#1      GCGCCCATTCCGGTGCGGTTTGTAGCTCGTCACGACGCTGCCCAAGTACCCGTCCTGGAT 491
                      *  **   ***   * *   *  *   * **  *     *    ***  * *  ***   

consensus_8960#0      GGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAG--GGAG 876
consensus_8960#2      GGCCAGATAGCGGGCGCACGTTTTCTCCAGCTCCGGTATGGGTAAGCGTGGCAG--GGAG 527
consensus_8960#1      GTTGTACCCGATGCCATACCCATCCTTCACAACCGGCCCAAATCCACCGGCCAGCAGGGC 551
                      *        *  * *  **   * ** **   ****      *   *  * ***  **  

consensus_8960#0      GGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATA-CTGATACTCTTCGCCGGT 935
consensus_8960#2      GGTTGAAAGTGGAGCATCGGTATCTTGGACCGCTGCAGATAGCTGATACTCTTCGCCGGT 587
consensus_8960#1      GGGCGAAGAGAGCGTACTGGTCGACAGGAT-GTTATGGTTAATCG-CACCATACGCCGGA 609
                      **  ***    * * *  ***     ***  * *   * **   *  **  * ****** 

consensus_8960#0      GGTTGG------GCGGGCCGAGGTAGACTGGCTACGGGCG-AG-ACATGCAAGCCATTGC 987
consensus_8960#2      GGTTGG------GCGGGCCGAGGTAGACTGGCTACGGGCGGAG-ACATGCAAGCCATTGC 640
consensus_8960#1      TCTTCGTACAGTGCCGGCAGTGGCAAACCGTTCCTCTGCGCCGTATGCTTCAGCCCGAAC 669
                        ** *      ** *** * ** * ** *       ***  * *      ****    *

consensus_8960#0      GTTTTCGGTACACGTAACATGG-TTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGT 1046
consensus_8960#2      GTTTTCGGTACACGTAACATGGGTTGGGGACAGTTCTTTGGTTTGGCTTAGAAATTGTGT 700
consensus_8960#1      AGATGCC-TAT-CGAACCCTTGCCCCATGGCCGCTTCCTTCGTCAGCT----GACCGTGC 723
                         * *  **  ** * * * *      * * * *   *   *  ***     *  *** 

consensus_8960#0      ATAAAATTAAGGCACTACGACGACACCCCGCGCACAATGC---ACTGTGTTAAACGAATG 1103
consensus_8960#2      ATAAAATTAAGGCACTACGACGACACCCCGCGCACAATGC---ACTGTGTTAAACGAATG 757
consensus_8960#1      ACCG---TCGAGCATTGGTTCATCATGTCGCGCACTCGGCCATGCTTTTCTTCTTGCCCG 780
                      *      *   *** *    *  **   *******   **    ** *  *    *   *

consensus_8960#0      AATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTT-CACTTGTAC 1162
consensus_8960#2      AATGGAGCTGTGTGCTGTCTCTCGGTTCAAAGTTCACCTTCCTTTGATTT-CACTTGTAC 816
consensus_8960#1      AATCGCGCCGCT--CCACCTCCTGGCAGAACGCTTTCGTCGCGACCGTGCACGGCCGCAT 838
                      *** * ** *    *   ***  **   ** * *  * *  *     *   *    * * 

consensus_8960#0      AGTGGAGGAATACAACAGGTGACGAAGCTTTGAACTCGCGTAATCTTATCAAACCACAGA 1222
consensus_8960#2      AGTGGAGGAATACAACAGGTGACGAAGCTTTGAACTCGCGTAATCTTATCAAACCACAGA 876
consensus_8960#1      CGTTTCCGTGCGCC-CGTGCCGGAAGGGGCCGTACTGCACGATTCGTACGTGCCCACGAA 897
                       **    *    *  *  *     * *    * ***     * ** **     ****  *

consensus_8960#0      CACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCAGAAATACGGTCGAAAAGATTAA 1282
consensus_8960#2      CACACAAAAAAGAAGGAGCAATGTTACACCAAGAACCAAAAATACGGTCGAAAAGATTAA 936
consensus_8960#1      CGCACCTTGCTGCTT--GTAGTAGGCCAGCTGAAAGCCGAGCTGCA-TCACCGAGTCCGG 954
                      * ***      *     * * *    ** *   ** *  *  * *  **    **     

consensus_8960#0      ACTACAAAACTAGACAACGGGCATTAATCCCGGGGGTGGTGGAGCAGATATGTATCGTGC 1342
consensus_8960#2      ACTACAAA---------------------------------------------------- 944
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GGC 1345
consensus_8960#2      ---
consensus_8960#1      ---
                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)