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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 869 fasta sequence
[ATCACATTTACTGTTCGGTGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT-A-TCG-AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC-TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA-CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG-GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGTAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTAATGTAAACATTAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAA]
[+] EMBL CNS09R1A [ATCACATTTACTGTTCGGTGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGAATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAAGGATAAGATCGAAGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCTGCTCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAAGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGCGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGCAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTAATGTAAACATTAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAA]
[+] EMBL BX602959 [ TGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGC ]
[+] EMBL BM619605 [ ccgGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTC A TCG AACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCCGATCAAGCGT ]
[+] EMBL BX621950 [ CGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGC CTTTCATTCGAAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATTCTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGTAAGCACGAGCTGCACCGACAGTGTGANGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTATTCCAGGCAGAGTTATTAAAG ]
[+] EMBL BX626815 [ CGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTC A TCG AACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAANGAGCGCACGGTGC ]
[+] EMBL BX617661 [ TCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAG ]
[+] EMBL AGA285217 [ GCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTAGCGTTAGAGATGCTGCGAAAGATAACGTGCACCGTGTGGCAAATGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGCTTGGAA GGTA ]
[+] EMBL BX616641 [ TAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTT GAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAG ]
[+] EMBL BX617123 [ TATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCTGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGAT AGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGTAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTA ]
[+] EMBL AGA285407 [ CGGATGTCCCAATACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGC ]
[-] EMBL AGA284110 [ AGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGCCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAG ]
[-] EMBL CNS09R1B [ TCCCGGTGAAGGCTGCTTTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAAGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGCGGCGTGCGGTACCAGGTGCCGCGTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTT ]
consensusID : consensus_8979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[CCCGAGGTTAGATATCGCATACGAAAAAAGTATGTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTCATCGAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGCTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGANAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGATCAAGCGTGGTGGGTGCGGTACCAGGTGCCGGTGCCGATCACC]
[+] EMBL AL695518 [CCCGAGGTTAGATATCGCATACGAAAAAAGTATGTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTCATCGAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGCTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGANAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGATCAAGCGTGGTGGGTGCGGTACCAGGTGCCGGTGCCGATCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8979#0 ATCACATTTACTGTTCGGTGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCA 60
consensus_8979#1 -------------CCCGAGGTTA----GATATC-GCATACGAAAAAAGTA-TGTTT-GCA 40
** ** ****** **************** ***** ***
consensus_8979#0 TTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGC 120
consensus_8979#1 TTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGC 100
************************************************************
consensus_8979#0 ACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAG 180
consensus_8979#1 ACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAG 160
************************************************************
consensus_8979#0 TACGGGCCGCACTTTATCGAACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAA 240
consensus_8979#1 TACGGGCCGCACTTCATCGAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAA 220
************** **************** ****************************
consensus_8979#0 ACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAAC 300
consensus_8979#1 ACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAAC 280
************************************************************
consensus_8979#0 TGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGC 360
consensus_8979#1 TGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGC 340
************************************************************
consensus_8979#0 AACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAG 420
consensus_8979#1 AACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAG 400
************** ** ***************** ***************** ** ***
consensus_8979#0 CTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAA-GGCTAAGCTGGAGCTGAATCC 479
consensus_8979#1 CTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGANAAAGGCTAAGCTGGAGCTGAATCC 460
*********************************** ** *********************
consensus_8979#0 GCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGAT 539
consensus_8979#1 GCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGAT 520
************************************************************
consensus_8979#0 CAAGCGTGGTGGCGTGCGGTACCAGGTGCCGGTGCCGATCACCGAGAAGCGATCGTACTT 599
consensus_8979#1 CAAGCGTGGTGG-GTGCGGTACCAGGTGCCGGTGCCGATCACC----------------- 562
************ ******************************
consensus_8979#0 TCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCC 659
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCG 719
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 TAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAG 779
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTAATGTAAACATTAAAAAAAAA 839
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 AAAAAAAAAAAAAGGCCACATGTGCCCGAA 869
consensus_8979#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||