These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 869 fasta sequence [ATCACATTTACTGTTCGGTGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT-A-TCG-AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC-TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA-CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG-GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGTAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTAATGTAAACATTAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAA] [+] EMBL CNS09R1A [ATCACATTTACTGTTCGGTGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGAATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAAGGATAAGATCGAAGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCTGCTCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAAGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGCGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGCAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTAATGTAAACATTAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAA] [+] EMBL BX602959 [ TGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGC ] [+] EMBL BM619605 [ ccgGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTC A TCG AACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCCGATCAAGCGT ] [+] EMBL BX621950 [ CGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGC CTTTCATTCGAAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATTCTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGTAAGCACGAGCTGCACCGACAGTGTGANGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTATTCCAGGCAGAGTTATTAAAG ] [+] EMBL BX626815 [ CGATATCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTC A TCG AACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAANGAGCGCACGGTGC ] [+] EMBL BX617661 [ TCCGCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAG ] [+] EMBL AGA285217 [ GCATACGAAAAAAGTAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTAGCGTTAGAGATGCTGCGAAAGATAACGTGCACCGTGTGGCAAATGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGCTTGGAA GGTA ] [+] EMBL BX616641 [ TAATGTTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTT GAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAG ] [+] EMBL BX617123 [ TATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCTGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGAT AGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCGTAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAGCTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTA ] [+] EMBL AGA285407 [ CGGATGTCCCAATACGGGCCGCACTTT A TCG AACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGC ] [-] EMBL AGA284110 [ AGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGCCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAACTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGTGGCGTGCGGTACCAGGTGCCG GTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAG ] [-] EMBL CNS09R1B [ TCCCGGTGAAGGCTGCTTTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGC TGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAAGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGA CCCCGATCAAGCGTGGCGGCGTGCGGTACCAGGTGCCGCGTGCCGATCACCGAGAAGCGATCGTACTTTCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCCGGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTT ] consensusID : consensus_8979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CCCGAGGTTAGATATCGCATACGAAAAAAGTATGTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTCATCGAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGCTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGANAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGATCAAGCGTGGTGGGTGCGGTACCAGGTGCCGGTGCCGATCACC] [+] EMBL AL695518 [CCCGAGGTTAGATATCGCATACGAAAAAAGTATGTTTGCATTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGCACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAGTACGGGCCGCACTTCATCGAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAAACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAACTGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGCAACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAGCTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGANAAAGGCTAAGCTGGAGCTGAATCCGCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGATCAAGCGTGGTGGGTGCGGTACCAGGTGCCGGTGCCGATCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8979#0 ATCACATTTACTGTTCGGTGTGGCGGCGATATCCGCATACGAAAAAAGTAATGTTTTGCA 60 consensus_8979#1 -------------CCCGAGGTTA----GATATC-GCATACGAAAAAAGTA-TGTTT-GCA 40 ** ** ****** **************** ***** *** consensus_8979#0 TTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGC 120 consensus_8979#1 TTTAATTTCATGTAATTTTGCATTGAATTATCGTTAGAGATGCTGCGAAAGATAGCGTGC 100 ************************************************************ consensus_8979#0 ACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAG 180 consensus_8979#1 ACCGTGTGGCAAAGGCATGCGGCTGCCCAGTGCATCGTGCCGGTCGCCCGGATGTCCCAG 160 ************************************************************ consensus_8979#0 TACGGGCCGCACTTTATCGAACCGATCGTGAGCAGGGATAAGATCGAGGAGCTGCACAAA 240 consensus_8979#1 TACGGGCCGCACTTCATCGAACCGATCGTGAACAGGGATAAGATCGAGGAGCTGCACAAA 220 ************** **************** **************************** consensus_8979#0 ACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAAC 300 consensus_8979#1 ACCGGCGACCTGTCGAAGATATCGCACGTCCCGGTGAAGGCCGCCCTCAGCAATCAGAAC 280 ************************************************************ consensus_8979#0 TGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGC 360 consensus_8979#1 TGCTCCGTGTTTTACGATCCGCTCGTTGCCCAGTTCACAAATTATGTAATGAAGCAGGGC 340 ************************************************************ consensus_8979#0 AACAAACAGCTTGCACGGGACCTGGTCGAGAAGGGGTTCGAAAACATCAAGCGACTTCAG 420 consensus_8979#1 AACAAACAGCTTGCCCGCGACCTGGTCGAGAAGGGATTCGAAAACATCAAGCGGCTACAG 400 ************** ** ***************** ***************** ** *** consensus_8979#0 CTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGAAAA-GGCTAAGCTGGAGCTGAATCC 479 consensus_8979#1 CTGGAACGGTACCATCTGTCCGAGTCGGAGGAGGANAAAGGCTAAGCTGGAGCTGAATCC 460 *********************************** ** ********************* consensus_8979#0 GCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGAT 539 consensus_8979#1 GCGCCGGCTGCTGCACCAGGCGGTGGAAAACTGTCGCCCACTGTTGCAGCTGACCCCGAT 520 ************************************************************ consensus_8979#0 CAAGCGTGGTGGCGTGCGGTACCAGGTGCCGGTGCCGATCACCGAGAAGCGATCGTACTT 599 consensus_8979#1 CAAGCGTGGTGG-GTGCGGTACCAGGTGCCGGTGCCGATCACC----------------- 562 ************ ****************************** consensus_8979#0 TCTCGCCATGAAGTGGCTGCTGGAAGCGATCCGGGAGAAGGAGCGCACGGTGCATTTCCC 659 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GGAGAAGATGGCGTGGGAGATACTGGATGCGGCCGCCAATCAGGGCAAGGTGGTTAAGCG 719 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 TAAGCACGAGCTGCACCGACAGTGTGAGGCGAACCGTGCCTACGCACATTATCGATGGAG 779 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CTAAATGTAGAGTTAATCCAGGCAGAGTTAATAAAGAGTAATGTAAACATTAAAAAAAAA 839 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 AAAAAAAAAAAAAGGCCACATGTGCCCGAA 869 consensus_8979#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||