cluster # 9

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Anopheles gambiae
cluster # 9 cluster # 9 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9#0 length = 666 sequences # 1

consensus_9#1 length = 654 sequences # 1

consensusID : consensus_9#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [AAACAAAAACCGTATATTCAACTTGAATGAAGATATAAAAAATCTCATGACGGTGTGGGTATTGTGCTACAATAACGACAATAGTTTACTCTACACTACGGGGAAACTACACTGCTTGACGATGGATGATTGAAGGACACGGGGCGCTGAACTCTCGATCGTAAAGCGTTCAGGTTCGATACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCAGGATCGGACTGGGGTTCGAAAAGAAGTAATCAAATGTGACGGGAAGAGAATGGGGATGGAAATGGGAATGGGAGGTCTGTTTGCAATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGATAGAAAGCACGAAGAGTCAAGATTGAGATCAGCTGACTGGAAATGCACGTGCCGTGAATTCGTTCTATCTCGTCGACGATTTGCACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCTGTACCTCGAGATCTAGTGCCCGCTCGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTGTCACGTAGGTCTTATTGTGGTATCTGTGCGTACTTGAAGATGGTTGCATATCGAGGCAATGATTGTCCTTTGTCCGTAGCTGATGCCCGAAGTGGCCTTTCCCCGTAGCCTGGACGTGGCGGGGCGTGTTGGCGCGATGGTCCCGCACCG]

[+] EMBL CNS097C9             [AAACAAAAACCGTATATTCAACTTGAATGAAGATATAAAAAATCTCATGACGGTGTGGGTATTGTGCTACAATAACGACAATAGTTTACTCTACACTACGGGGAAACTACACTGCTTGACGATGGATGATTGAAGGACACGGGGCGCTGAACTCTCGATCGTAAAGCGTTCAGGTTCGATACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCAGGATCGGACTGGGGTTCGAAAAGAAGTAATCAAATGTGACGGGAAGAGAATGGGGATGGAAATGGGAATGGGAGGTCTGTTTGCAATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGATAGAAAGCACGAAGAGTCAAGATTGAGATCAGCTGACTGGAAATGCACGTGCCGTGAATTCGTTCTATCTCGTCGACGATTTGCACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCTGTACCTCGAGATCTAGTGCCCGCTCGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTGTCACGTAGGTCTTATTGTGGTATCTGTGCGTACTTGAAGATGGTTGCATATCGAGGCAATGATTGTCCTTTGTCCGTAGCTGATGCCCGAAGTGGCCTTTCCCCGTAGCCTGGACGTGGCGGGGCGTGTTGGCGCGATGGTCCCGCACCG]




>consensus_9#0
AAACAAAAACCGTATATTCAACTTGAATGAAGATATAAAAAATCTCATGACGGTGTGGGT
ATTGTGCTACAATAACGACAATAGTTTACTCTACACTACGGGGAAACTACACTGCTTGAC
GATGGATGATTGAAGGACACGGGGCGCTGAACTCTCGATCGTAAAGCGTTCAGGTTCGAT
ACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCAGGATCGGACTGGGGTTCGAAAAGA
AGTAATCAAATGTGACGGGAAGAGAATGGGGATGGAAATGGGAATGGGAGGTCTGTTTGC
AATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGATAGAAAGCACGAAGAGTCAAGATT
GAGATCAGCTGACTGGAAATGCACGTGCCGTGAATTCGTTCTATCTCGTCGACGATTTGC
ACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCTGTACCTCGAGATCTAGTGCCCGCT
CGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTGTCACGTAGGTCTTATTGTGGTATC
TGTGCGTACTTGAAGATGGTTGCATATCGAGGCAATGATTGTCCTTTGTCCGTAGCTGAT
GCCCGAAGTGGCCTTTCCCCGTAGCCTGGACGTGGCGGGGCGTGTTGGCGCGATGGTCCC
GCACCG

consensusID : consensus_9#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CTTGACCGATTTNCATTCAATGTAAAACAAAACCCGTATATTCAACTTGAATGAAGATATAAAAAATCTCATGACGGTGTGGGTATTGTGCTACAATAACGACAATAGTTTACTCTACACTACGGGGAAACTACACTGCTTGACGATGGATGATTGTGGGACACGGGGCGCTGAACTCTCGATCGTAAAGCGTTCAGGTTCGATACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCAGGATCGGACTGGGGTTCGAAAAGAAGTAATCAAAAGTGACGGGAAGAAAATGGGAATGGAAATGGGAATAGGAGGTCTGTTTGCAATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGATAGAAAGCACGAAGAGTCAAGATTGAGATCAGCTGACTGGAAATGCACGTGCCGTGAATTCGTTCTATCTCGTCGACGATTTGCACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCTGTACCTCGAGATCTAGTGCCCGCTCGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTGTCACGTAGGTCTTATTGTGGTATCTACAAAACGAAGCCAAAACGCGATTACTAGTATCTGCTGGCTGGCAGGNCCAGCAAGTGTGTACCATTCGATAAAGGTTGACAGTGTTCC]

[-] EMBL BX627157             [CTTGACCGATTTNCATTCAATGTAAAACAAAACCCGTATATTCAACTTGAATGAAGATATAAAAAATCTCATGACGGTGTGGGTATTGTGCTACAATAACGACAATAGTTTACTCTACACTACGGGGAAACTACACTGCTTGACGATGGATGATTGTGGGACACGGGGCGCTGAACTCTCGATCGTAAAGCGTTCAGGTTCGATACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCAGGATCGGACTGGGGTTCGAAAAGAAGTAATCAAAAGTGACGGGAAGAAAATGGGAATGGAAATGGGAATAGGAGGTCTGTTTGCAATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGATAGAAAGCACGAAGAGTCAAGATTGAGATCAGCTGACTGGAAATGCACGTGCCGTGAATTCGTTCTATCTCGTCGACGATTTGCACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCTGTACCTCGAGATCTAGTGCCCGCTCGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTGTCACGTAGGTCTTATTGTGGTATCTACAAAACGAAGCCAAAACGCGATTACTAGTATCTGCTGGCTGGCAGGNCCAGCAAGTGTGTACCATTCGATAAAGGTTGACAGTGTTCC]




>consensus_9#1
CTTGACCGATTTNCATTCAATGTAAAACAAAACCCGTATATTCAACTTGAATGAAGATAT
AAAAAATCTCATGACGGTGTGGGTATTGTGCTACAATAACGACAATAGTTTACTCTACAC
TACGGGGAAACTACACTGCTTGACGATGGATGATTGTGGGACACGGGGCGCTGAACTCTC
GATCGTAAAGCGTTCAGGTTCGATACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCA
GGATCGGACTGGGGTTCGAAAAGAAGTAATCAAAAGTGACGGGAAGAAAATGGGAATGGA
AATGGGAATAGGAGGTCTGTTTGCAATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGA
TAGAAAGCACGAAGAGTCAAGATTGAGATCAGCTGACTGGAAATGCACGTGCCGTGAATT
CGTTCTATCTCGTCGACGATTTGCACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCT
GTACCTCGAGATCTAGTGCCCGCTCGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTG
TCACGTAGGTCTTATTGTGGTATCTACAAAACGAAGCCAAAACGCGATTACTAGTATCTG
CTGGCTGGCAGGNCCAGCAAGTGTGTACCATTCGATAAAGGTTGACAGTGTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9#0      ------------------------AAACAAAAACCGTATATTCAACTTGAATGAAGATAT 36
consensus_9#1      CTTGACCGATTTNCATTCAATGTAAAACAAAACCCGTATATTCAACTTGAATGAAGATAT 60
                                           ******** ***************************

consensus_9#0      AAAAAATCTCATGACGGTGTGGGTATTGTGCTACAATAACGACAATAGTTTACTCTACAC 96
consensus_9#1      AAAAAATCTCATGACGGTGTGGGTATTGTGCTACAATAACGACAATAGTTTACTCTACAC 120
                   ************************************************************

consensus_9#0      TACGGGGAAACTACACTGCTTGACGATGGATGATTGAAGGACACGGGGCGCTGAACTCTC 156
consensus_9#1      TACGGGGAAACTACACTGCTTGACGATGGATGATTGTGGGACACGGGGCGCTGAACTCTC 180
                   ************************************  **********************

consensus_9#0      GATCGTAAAGCGTTCAGGTTCGATACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCA 216
consensus_9#1      GATCGTAAAGCGTTCAGGTTCGATACTGGAGGGTTCTGGAGGGCTTATTATCACCACGCA 240
                   ************************************************************

consensus_9#0      GGATCGGACTGGGGTTCGAAAAGAAGTAATCAAATGTGACGGGAAGAGAATGGGGATGGA 276
consensus_9#1      GGATCGGACTGGGGTTCGAAAAGAAGTAATCAAAAGTGACGGGAAGAAAATGGGAATGGA 300
                   ********************************** ************ ****** *****

consensus_9#0      AATGGGAATGGGAGGTCTGTTTGCAATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGA 336
consensus_9#1      AATGGGAATAGGAGGTCTGTTTGCAATTCAACAGAAAGGTGGAAAAGGTTGAAAGAGAGA 360
                   ********* **************************************************

consensus_9#0      TAGAAAGCACGAAGAGTCAAGATTGAGATCAGCTGACTGGAAATGCACGTGCCGTGAATT 396
consensus_9#1      TAGAAAGCACGAAGAGTCAAGATTGAGATCAGCTGACTGGAAATGCACGTGCCGTGAATT 420
                   ************************************************************

consensus_9#0      CGTTCTATCTCGTCGACGATTTGCACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCT 456
consensus_9#1      CGTTCTATCTCGTCGACGATTTGCACTCGTCCTGCCGTATAGCCTTTTCCATCGCGCGCT 480
                   ************************************************************

consensus_9#0      GTACCTCGAGATCTAGTGCCCGCTCGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTG 516
consensus_9#1      GTACCTCGAGATCTAGTGCCCGCTCGCGATCACTTTCCGTTTCGCTAAACTCGGCCGCTG 540
                   ************************************************************

consensus_9#0      TCACGTAGGTCTTATTGTGGTATCTGTGCGTACTTGAAGATGGTTGCATATCGAGGCAAT 576
consensus_9#1      TCACGTAGGTCTTATTGTGGTATCTAC---------AAAACGAAGCCAAAACGCGATTAC 591
                   *************************           ** * *    ** * ** *   * 

consensus_9#0      GATTGTCCTTTGTCCGTAGCTGATGCCCGAAGTGGCCTTTCCCCGTAGCCTGGACGTGGC 636
consensus_9#1      TAGTATCTGCTGGCTG--GCAGGNCCAGCAAGTG---TGTACCATTCGATAAAGGTTGAC 646
                    * * **   ** * *  ** *   *   *****   * * **  * *        ** *

consensus_9#0      GGGGCGTGTTGGCGCGATGGTCCCGCACCG 666
consensus_9#1      AGTGTTCC---------------------- 654
                    * *