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Anopheles gambiae
cluster # 9000 cluster # 9000       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9000#0 length = 1135 sequences # 3  
consensus_9000#1 length = 955 sequences # 4  
consensus_9000#2 length = 848 sequences # 3  
consensus_9000#3 length = 636 sequences # 3  

consensusID : consensus_9000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1135
fasta sequence
                              [CGACCCACGCGTCCGGCTGAGC-TCCAACCTTTGCGTTACCCAGCAGAAGGAGCTCGACGAGCTGATGCTGAAGCTTGACGGAACCGAGAACAAGTCGAAGCTCGGTGCCAACGCTATTCTGGGCGTTTCGTTGGCCATCTGCAAGGCCGGCGCTGCCAAGAAGGGAGTCCCGCTGTACAAACACATCGCTGATCTCGCTGGCAATGGCAACATCATCCTGCCGGTGCCGGCCTTCAACGTCATCAACGGTGGTAGCCACGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTGCCGACCGGTGCGTCGTCCTTTACCGAGGCGATGAAGATCGGCAGCGAGGTGTACCACCACCTGAAGAACGTCATCAAGGCCAAGTTCGGTCTGGACGCGACGGCCGTCGGTGATG-AGGGCGGCTTCGCCCCCAACATCCTGGAGAACAAGGAAGCGCTGAACCTGATCCAGGACGCCATCGCCAAGGCCGGCTACACCGGCAAGGTCGAGATCGGCATGGACGTGGCCGCGTCCGAGTTCCACAAGGAGGGCAAGTACGATCTGGACTTCAAGAACCCGAAGTCGGACCCGAGCGCCTGGTTGACGCCCGACGCGCT-GGAGCAGATGTACCAGGGCTTCATCAAGGACTTCCCGATCGTGAGCATTGAGGATCCCTTCGACCAGGACCACTGGGACGCGTGGAGCAAGATAACTGCCAACACCACGATCCAGATCGTCGGCGACGATCTGACCGTCACCAACCCGTGCAGAGCGGGTTAGTTTGGTCAGTGGTGTCGTACGTTGAAGAAGGGCCAGGGAGCGACGACCTAGTCTCAGATGTGCAGATGTGCACTCAACATTAGTCGTCCTGTGAGCGAAACCTCTCACCCCGACCACCATCATCATCCTCTTCGCTGTTGACGCAAGCCAACTTACAGTAAGACCCACTAGCCCCGTAGCGCCCACAACAACTCACCCCACCAACTTGAACCTCGGTATTTATCGTCATGAAGCTCTAATACGCAAGAAGCATAAATTGTAAGGCTTAAAGTTATTGAATGTTATAATTGTTAAATGAAAGTGTGACAAGTACGTTTGTCAATGCATTACTGAAAGTACATGATCATTCGATAATAA]

[+] EMBL BM620155             [CGACCCACGCGTCCGGCTGAGC TCCAACCTTTGCGTTACCCAGCAGAAGGAGCTCGACGAGCTGATGCTGAAGCTTGACGGAACCGAGAACAAGTCGAAGCTCGGTGCCAACGCTATTCTGGGCGTTTCGTTGGCCATCTGCAAGGCCGGCGCTGCCAAGAAGGGAGTCCCGCTGTACAAACACATCGCTGATCTCGCTGGCAATGGCAACATCATCCTGCCGGTGCCGGCCTTCAACGTCATCAACGGTGGTAGCCACGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTGCCGACCGGTGCGTCGTCCTTTACCGAGGCGATGAAGATCGGCAGCGAGGTGTACCACCACCTGAAGAACGTCATCAAGGCCAAGTTCGGTCTGGACGCGACGGCCGTCGGTGATG AGGGCGGCTTCGCCCCCAACATCCTGGAGAACAAGGAAGCGCTGAACCTGATCCAGGACGCCATCGCCAAGGCCGGCTACACCGGCAAGGTCGAGATCGGCATGGACGTGGCCGCGTCCGAGTTCCACAAGGAGGGCAAGTACGATCTGGACTTCAAGAACCCGAAGTCGGACCCGAGCGCCTGGTTGACGCCCGACGCGCTGGGAGCAGATGTACCAGGGCTTCATCAAGGACTTCCCGATCGTGAGCATTGAGGATCCCTTCGACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM621445             [ccgCCCACGCGTCCGCCCACGCGTCC      GGCGTTACCCAGCAGAAGGAGCTCGACGAGCTGATGCTGAAGCTTGACGGAACCGAGAACAAGTCGAAGCTCGGTGCCAACGCTATTCTGGGCGTTTCGTTGGCCATCTGCAAGGCCGGCGCTGCCAAGAAGGGAGTCCCGCTGTACAAACACATCGCTGATCTCGCTGGCAATGGCAACATCATCCTGCCGGTGCCGGCCTTCAACGTCATCAACGGTGGTAGCCACGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTGCCGACCGGTGCGTCGTCCTTTACCGAGGCGATGAAGATCGGCAGCGAGGTGTACCACCACCTGAAGAACGTCATCAAGGCCAAGTTCGGTCTGGACGCGACGGCCGTCGGTGATG AGGGCGGCTTCGCCCCCAACATCCTGGAGAACAAGGAAGCGCTGAACCTGATCCAGGACGCCATCGCCAAGGCCGGCTACACCGGCAAGGTCGAGATCGGCATGGACGTGGCCGCGTCCGAGTTCCACAAGGAGGGCAAGTACGATCTGGACTTCAAGAACCCGAAGTCGGACCCGAGCGCCTGGTTGACGCCCGACGCGCT GGAGCAGATGTACCAGGGCTTCATCAAGGACTTCCCGATCGTGAGCATTGAGGATCCCTTCGACCAGGACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CNS08SD4             [                                                                                                                                                                                                                                                           GGTAGCCACGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTGCCGACCGGTGCGTCGTCCTTTACCGAGGCGATGAAGATCGGCAGCGGAGTGTACCACCACCTGAAGAACGTTATCAAGGCCAAGTTCGGTCTGGACGCCACGGCCGTCGGTGATGAAGGGC GCTTCGCGCCCAACATCCTGGAGAACAAGGAAGCGCTGAACCTGATCCAGGACGCCATCGCCAAGGGCGGCTACACCGGCAAGGTCGAGATCGGCATGGACGTGGCCGCGTCCGAGTTCCACAAGGAGGGCAAGTACGTTCTGGACTTCAAGAACCCGAAGTCGGACCCGAGCGCCTGGTTAACGCCCGACGCGCT GGAGCAGATGTACCAGGGCTTCATCAAGGACTTCCCGATCGTGAGCATTGAGGATCCCTTCGACCAGGACCACTGGGACGCGTGGAGCAAGATAACTGCCAACACCACGATCCAGATCGTCGGCGACGATCTGACCGTCACCAACCCGTGCAGAGCGGGTTAGTTTGGTCAGTGGTGTCGTACGTTGAAGAAGGGCCAGGGAGCGACGACCTAGTCTCAGATGTGCAGATGTGCACTCAACATTAGTCGTCCTGTGAGCGAAACCTCTCACCCCGACCACCATCATCATCCTCTTCGCTGTTGACGCAAGCCAACTTACAGTAAGACCCACTAGCCCCGTAGCGCCCACAACAACTCACCCCACCAACTTGAACCTCGGTATTTATCGTCATGAAGCTCTAATACGCAAGAAGCATAAATTGTAAGGCTTAAAGTTATTGAATGTTATAATTGTTAAATGAAAGTGTGACAAGTACGTTTGTCAATGCATTACTGAAAGTACATGATCATTCGATAATAA]


>consensus_9000#0 CGACCCACGCGTCCGGCTGAGCTCCAACCTTTGCGTTACCCAGCAGAAGGAGCTCGACGA GCTGATGCTGAAGCTTGACGGAACCGAGAACAAGTCGAAGCTCGGTGCCAACGCTATTCT GGGCGTTTCGTTGGCCATCTGCAAGGCCGGCGCTGCCAAGAAGGGAGTCCCGCTGTACAA ACACATCGCTGATCTCGCTGGCAATGGCAACATCATCCTGCCGGTGCCGGCCTTCAACGT CATCAACGGTGGTAGCCACGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTGCC GACCGGTGCGTCGTCCTTTACCGAGGCGATGAAGATCGGCAGCGAGGTGTACCACCACCT GAAGAACGTCATCAAGGCCAAGTTCGGTCTGGACGCGACGGCCGTCGGTGATGAGGGCGG CTTCGCCCCCAACATCCTGGAGAACAAGGAAGCGCTGAACCTGATCCAGGACGCCATCGC CAAGGCCGGCTACACCGGCAAGGTCGAGATCGGCATGGACGTGGCCGCGTCCGAGTTCCA CAAGGAGGGCAAGTACGATCTGGACTTCAAGAACCCGAAGTCGGACCCGAGCGCCTGGTT GACGCCCGACGCGCTGGAGCAGATGTACCAGGGCTTCATCAAGGACTTCCCGATCGTGAG CATTGAGGATCCCTTCGACCAGGACCACTGGGACGCGTGGAGCAAGATAACTGCCAACAC CACGATCCAGATCGTCGGCGACGATCTGACCGTCACCAACCCGTGCAGAGCGGGTTAGTT TGGTCAGTGGTGTCGTACGTTGAAGAAGGGCCAGGGAGCGACGACCTAGTCTCAGATGTG CAGATGTGCACTCAACATTAGTCGTCCTGTGAGCGAAACCTCTCACCCCGACCACCATCA TCATCCTCTTCGCTGTTGACGCAAGCCAACTTACAGTAAGACCCACTAGCCCCGTAGCGC CCACAACAACTCACCCCACCAACTTGAACCTCGGTATTTATCGTCATGAAGCTCTAATAC GCAAGAAGCATAAATTGTAAGGCTTAAAGTTATTGAATGTTATAATTGTTAAATGAAAGT GTGACAAGTACGTTTGTCAATGCATTACTGAAAGTACATGATCATTCGATAATAA



consensusID : consensus_9000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 955
fasta sequence
                              [GACATGGTTTAACTGAAGGGTGAAAGTTTATTTTAATCTTAGTGACGCTTAATATTGTACAGTAAAAATATCTTACGATTTCTCTTTTACCGGCCCATACGCGACATATACATTGAAAGTGACACAGTAATATTCGAGCTCAAACATAAAATGGATTGAAAGATTTTCTTTAAAATTATGCACCACATTCGTGTAAACAATCTAATCTTGATGTATATGCCCTGTCTTTAGTGC-AATTAG-AAATA-TGCAAA-CCTATAA-TTTTAAGCTACACCACATTCAGAGAGTTCATCAATAAATGAAGATATATAAACTTCATTGCAATTAGGAGAAAGATAACCCGCTGTAGTGCGAAAGAGAAAATGTCAAGTAAAGGATTTTTTTTTGCAACGAATACAAATAGTTCTACGCACACATGTTTTAATGATTTAGGCCTTTTTGGTCTACGATTTATGCTTCTTCCCGAAGTGGCCGAAGTGTACTGAACGATTTTCGGCGGATATCCAATTAGATCCATGGCAGCGTGAAATCCATACTAAACACGCTGCATCACCGCGCAC-CGTGTGGTTATTTGAAATCGCGACTTGGGTGCAACCGCCTAATACGCAACACAACGGTGCTCGCGTGGCCGG-TTTCATTCTACTTTAAGAGCACTTCTTTCCTTTCCTTACGGATGATTTGTTCTTCGGATCGAACGGATAACATACATATCGCTACGATTTTCCCAGGTTTCGTTTTCCTCCTATCTCTCGCTACAAACCAGAGCGATCTCACACATTGTCTCAGCCTTTTTATTTCATACGATTTTCTTTTTACAGTAACAATTTAGCTTATGTAGCTCTCTCCATCTCTCTGTTTCTCTCGCACCA-CCCTGCAGCAGCAGAACAACAGTGAGTAATAGTAGACATACTTATGTGTGTTTGGGTGCGGATTTCGAGGAGCCTCGTGCCGATCTTGC]

[-] EMBL BM591423             [GACATGGTTTAACTGAAGGGTGAAAGTTTATTTTAATCTTAGTGACGCTTAATATTGTACAGTAAAAATATCTTACGATTTCTCTTTTACCGGCCCATACGCGACATATACATTGAAAGTGACACAGTAATATTCGAGCTCAAACATAAAATGGATTGAAAGATTTTCTTTAAAATTATGCACCACATTCGTGTAAACAATCTAATCTTGATGTATATGCCCTGTCTTTAGTGC AATTAG AAATA TGCAAA CCTATAA TTTTAAGCTACACCACATTCAGAGAGTTCATCAATAAATGAAGATATATAAACTTCATTGCAATTAGGAGAAAGATAACCCGCTGTAGTGCGAAAGAGAAAATGTCAAGTAAAGGATTTTTTTTTGCAACGAATACAAATAGTTCTACGCACACATGTTTTAATGATTTAGGCCTTTTTGGTCTACGATTTATGCTTCTTCCCGAAGTGGCCGAAGTGTACTGAACGATTTTCGGCGGATATCCAATTAGATCCATGGCAGCGTGAAATCCATACTAAACACGCTGCATCACCGCGCAC CGTGTGGTTATTTGAAATCGCGACTTGGGTGCAACCGCCTAATACGCAACACAACGGTGCTCGCGCGG                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS08VXJ             [         TAACTGAAGGGTGAAAGTTTATTTTAATCTTAGTGACGCTTAATATTGTACAGTAAAAATATCTTACGATTTCTCTTTTACCGGCCCATACGCGACATATACATTGAAAGTGACACAGTAATATTCGAGCTCAAACATAAAATGGATTGAAAGATTTTCTTTAAAATTATGCACCACATTCGTGTAAACAATCTAATCTTGATGTATATGCCCTGTCTTTAGTGC AATTAG AAATA TGCAAA CCTATAA TTTTAAGCTACACCACATTCAGAGAGTTCATCAATAAATGAAGATATATAAACTTCATTGCAATTAGGAGAAAGATAACCCGCTGTAGTGCGAAAGAGAAAATGTCAAGTAAAGGA TTTTTTTTGCAACGAATACAAATAGTTCTACGCACACATGTTTTAATGATTTAGGCCTTTTTGGTCTACGATTTATGCTTCTTCC  AATGGGCCGAAGTGTACTGAATGATTTTCGGCGGATATCCAATTAGATCCATGGCAGCGTGAAATCCATACTAAACACGCTGCATCACCGCGCAC CGTGTGGTTATTTGAAATCGCGACTTGGGTGCAA CGCCTAATACGCAACACAACGGTGCTCGCGTGGCCGG TTTCATTCTACTTTAAGAGCACTTCTTTCCTTTCCTTACGGATGATTTGTTCTTCGGATCGAACGGATAACATACATATCGCTACGATTTTCCCAGGTTTCGTTTTCCTCCTATCTCTCGCTACAAACCAGAGCGATCTCACACATTGTCTCAGCCTTTTTATTTCATACGATTTTCTTTTTACAGTAACAA                                                                                                                                       ]
[+] EMBL CNS08MJ7             [   aaagaaaAACTGAAGGGTG AAGTTTATTTTAATCTTAGTGACGCTTAATATTGTACAGTAAAAATATCTTACGATTTCTCTTTTACCGGCCCATACGCGACATATACATTGAAAGTGACACAGTAATATTCGAGCTCAAACATAAAATGGATTGAAAGATTTTCTTTAAAATTATGCACCACATTCGTGTAAACAATCTAATCTTGATGTATATGCCCTGTCTTTAGTGC AATTAG AAATA TGCAAA CCTATAA TTTTAAGCTACACCACATTCAGAGAGTTCATCAATAAATGAAGATATATAAACTTCATTGCAATTAGGAGAAAGATAACCCGCTGTAGTGCGAAAGAGAAAATGTCAAGTAAAGGA TTTTTTTTGCAACGAATACAAATAGTTCTACGCACACATGTTTTAATGATTTAGGCCTTTTTGGTCTACGATTTATGCTTCTTCC  AATGGGCCGAAGTGTACTGAATGATTTTCGGCGGATATCCAATTAGATCCATGGCAGCGTGAAATCCATACTAAACACGCTGCATCACCGCGCACGCGTGTGGTTATTTGAAATCGCGACTTGGGTGC ACCGCCTAATACGCAACACAACGGTGCTCGCGTGGCCGGTTTTAATTCTACTTTAAGAGCACTTCTTTCCTTTCCTTACGGATGATTTGTTCTTCGGATCGAACGGATAACATACATATCGCTACGATTTTCCCAGGTTTCGTTTTCCTCCTATCTCTCGCTACAAACCAGAGCGATCTCACACATTGTCTCAGCCTTTTTATTTCATACGATTTTCTTTTTACAGTAACAATTTAGCTTATGTAGCTCTCTCCATCTCTCTGTTTCTCTCGCACCA CCCTGCAGCAGCAGAACAACAGTGAGTAATAGTAGACATACTTATGTGTGTTTGGGTGCGGATTTCGAG                    ]
[-] EMBL BX467583             [                                                                                                                                                                                                                           CCCTGTCTTTAGTGCAAATTAGAAAATATTGCAAACCCTATAATTTTTAAG TACACCACATTCAGAGAGTTCATCAATAAATGAAGATATATAAACTTCATTGCAATTAGGAGAAAGATAACCCGCTGTAGTGCGAAAGAGAAAATGTCAAGTAAAGGATTTTTTTTTGCAACGAATACAAATAGTTCTACGCACACATGTTTTAATGATTTAGGCCTTTTTGGTCTACGATTTATGCTTCTTCCCGAAGTGGCCGAAGTGTACTGAACGATTTTCGGCGGATATCCAATTAGATCCATGGCAGCGTGAAATCCATACTAAACACGCTGCATCACCGCGCAC CGTGTGGTTATTTGAAATCGCGACTTGGGTGCAACCGCCTAATACGCAACACAACGGTGCTCGCGTGGCCGG TTTCATTCTACTTTAAGAGCACTTCTTTCCTTTCCTTACGGATGATTTGTTCTTCGGATCGAACGGATAACATACATATCGCTACGATTTTCCCAGGTTTCGTTTTCCTCCTATCTCTCGCTACAAACCAGAGCGATCTCACACATTGTCTCAGCCTTTTTATTTCATACGATTTTCTTTTTACAGTAACAATTTAGCTTATGTAGCTCTCTCCATCTCTCTGTTTCTCTCGCACCACCCCTGCAGCAGCAGAACAACAGTGAGTAATAGTAGACATACTTATGTGTGTTTGGGTGCGGATTTCGAGGAGCCTCGTGCCGATCTTGC]


>consensus_9000#1 GACATGGTTTAACTGAAGGGTGAAAGTTTATTTTAATCTTAGTGACGCTTAATATTGTAC AGTAAAAATATCTTACGATTTCTCTTTTACCGGCCCATACGCGACATATACATTGAAAGT GACACAGTAATATTCGAGCTCAAACATAAAATGGATTGAAAGATTTTCTTTAAAATTATG CACCACATTCGTGTAAACAATCTAATCTTGATGTATATGCCCTGTCTTTAGTGCAATTAG AAATATGCAAACCTATAATTTTAAGCTACACCACATTCAGAGAGTTCATCAATAAATGAA GATATATAAACTTCATTGCAATTAGGAGAAAGATAACCCGCTGTAGTGCGAAAGAGAAAA TGTCAAGTAAAGGATTTTTTTTTGCAACGAATACAAATAGTTCTACGCACACATGTTTTA ATGATTTAGGCCTTTTTGGTCTACGATTTATGCTTCTTCCCGAAGTGGCCGAAGTGTACT GAACGATTTTCGGCGGATATCCAATTAGATCCATGGCAGCGTGAAATCCATACTAAACAC GCTGCATCACCGCGCACCGTGTGGTTATTTGAAATCGCGACTTGGGTGCAACCGCCTAAT ACGCAACACAACGGTGCTCGCGTGGCCGGTTTCATTCTACTTTAAGAGCACTTCTTTCCT TTCCTTACGGATGATTTGTTCTTCGGATCGAACGGATAACATACATATCGCTACGATTTT CCCAGGTTTCGTTTTCCTCCTATCTCTCGCTACAAACCAGAGCGATCTCACACATTGTCT CAGCCTTTTTATTTCATACGATTTTCTTTTTACAGTAACAATTTAGCTTATGTAGCTCTC TCCATCTCTCTGTTTCTCTCGCACCACCCTGCAGCAGCAGAACAACAGTGAGTAATAGTA GACATACTTATGTGTGTTTGGGTGCGGATTTCGAGGAGCCTCGTGCCGATCTTGC



consensusID : consensus_9000#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 848
fasta sequence
                              [CCGCGGACGCGTGGGATCGTCGTCGACGCACGTCGTGTTCGCGGTTGTTCAGTGAGTGAGCTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCTGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATCACGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAGACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCGCTTCATATGCAAAAAAAAGAACACAT--ACACACACACAACAGAGACAGAGACATGAGAAACTGTGCGGTGGGTGGAGAGAGCTTGCGTTGCGCGTGCCTAAAACCCGCTGGCTTCCACTTTACACTCC-GGGTGTCGAGGAACTTATTTTAAGAAGTGCAAAAGTGGCTGAACGGCGCGCTGTGACTACTGACGTTGCGCGTCAACAGCGGTGAGAAAGGTGGAGCGTTTGTTAACACAAAAGCTGGCAAATATAGAGAAAAGCGCATGTACCTACCACAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGGGGGG]

[+] EMBL BM608578             [CCGCGGACGCGTGGGATCGTCGTCGACGCACGTCGTGTTCGCGGTTGTTCAGTGAGTGAGCTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCTGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATCACGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAGACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCGCTTCATATGCAAAAAAAAGAACACATACACACACACACAACAGAGACAGAGACATGAGAAACTGTGCGGTGGGTGGAGAGAGCTTGCGTTGCGCGTGCCTAAAACCCGCTGGCTTCCACTTTACACTCC GGGTGTCGAGGAACTTATTTTAAGAAGTGCAAAA                                                                                                                                                                         ]
[+] EMBL CNS0947B             [                                      TCGCGGTTGTTCAGTGAGTGAGCTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCGGAGAAGCGCGGCAAGC CCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACCTGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATCACGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAGACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCGCTTCATATGCAAAAAAAAGAACACAT  ACACACACACAACAGAGAGAGAGACATGAGAAACTGTGCGGTGGGTGGAGAGAGCTTGCGTTGCGCGTGCCTAAAACCCGCTGGCTTCCACTTTACACTCC GGGTGTCGAGGAACTTATTTTAAGAAGTGCAAAAGTGGCTGAACGGCGCGCTGTGACTACTGACGTTGCGCGTCAACAGCGGTGAGAAAGGTGGAGCGTTTGTTAACACAAAAGCTGGCAAATATAGAGAAAAGCGCATGTACCTACCACAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGGGGGG]
[+] EMBL BM612551             [                                               ccgAGTGAGTGAGCTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCGGCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATGTCGAGCGGTGGACCAACAACCTGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATCACGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTAGACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCGCTTCATATGCAAAAAAAAGAACACAT  ACACACACAC       ACA   ACA GAGAAACTGTGCGGTGGGTGGAGAGAGCTTGCGTTGCGCGTGCCTAAAACCCGCTGGCTTCCACTTTACACTCCGGGGTGTCGAGGAACTTATTTTAAGAAGTGCAA                                                                                                                                                                           ]


>consensus_9000#2 CCGCGGACGCGTGGGATCGTCGTCGACGCACGTCGTGTTCGCGGTTGTTCAGTGAGTGAG CTGCCAAAGTTCGAGTTCCAACCATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGT GCATCAACAACGCGGAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGG TCGTGATCAAGTTCCTGACCGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCG TGGACGATCATCGCAGCGGCAAGGTGGTGGTCAATCTGACCGGTCGCCTCAACAAGGCCG GCATCATCTCGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACAACC TGCTGCCCTCCCGTCAGTTTGGCTACGTCGTCCTGACTACCAGCGGTGGCATCATGGATC ACGAGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAGAGTA GACCAGCAACAGCAACTCCCCCTTACCCAGAAACAGCGCTTCATATGCAAAAAAAAGAAC ACATACACACACACAACAGAGACAGAGACATGAGAAACTGTGCGGTGGGTGGAGAGAGCT TGCGTTGCGCGTGCCTAAAACCCGCTGGCTTCCACTTTACACTCCGGGTGTCGAGGAACT TATTTTAAGAAGTGCAAAAGTGGCTGAACGGCGCGCTGTGACTACTGACGTTGCGCGTCA ACAGCGGTGAGAAAGGTGGAGCGTTTGTTAACACAAAAGCTGGCAAATATAGAGAAAAGC GCATGTACCTACCACAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCG GGGGGGGG



consensusID : consensus_9000#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 636
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAATCTAGCGAAAACATTTGGTGCACTTTTCGTCCGCAGAGTTTCTGCCTATTCTTCGGCACAAAATGGCCCGTTTCGTAGGTTTGGATAAACTCGGCAAGCTGTTCAACTACATCCGCGACAATGGAGGAATCCGTGCCAGTTTGTACAAGCTGTACAGAATGGACGAGATGAAGGCTGGCCGTTTGGTGGGCGAGGACAAGTACGGCAACAAGTACTACGAAGATCCGTCCCAGTTCTATGGCCGCAATCGCTGGGTCGAGTATGCGCCGCACTGGAACCTGGAGTACGACGGTTCCCAAATCCCGGCCGAGTGGTTCGGATGGATGCACTACAAGACTGATCTGCCGCCGAATCGTGATGGTAATCGTCCGCATTACGCGTGGATGTTGGATCATAGTGACAATAAGTCCGGAACCAAATTTTCTTACATGCCGTACTCAACGACCCGCCCGAAGTTGAAGGATGGGATCCGAAAAAGTCGCTCCCGAAGTGAAGTGTTGTGTTGCCGTGTGTGTACCGTTCGATACAATATATAACAGCTTGTAGAAGATTGT--------AAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCCGCCC]

[+] EMBL BM605097             [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAATCTAGCGAAAACATTTGGTGCACTTTTCGTCCGCAGAGTTTCTGCCTATTCTTCGGCACAAAATGGCCCGTTTCGTAGGTTTGGATAAACTCGGCAAGCTGTTCAACTACATCCGCGACAATGGAGGAATCCGTGCCAGTTTGTACAAGCTGTACAGAATGGACGAGATGAAGGCTGGCCGTTTGGTGGGCGAGGACAAGTACGGCAACAAGTACTACGAAGATCCGTCCCAGTTCTATGGCCGCAATCGCTGGGTCGAGTATGCGCCGCACTGGAACCTGGAGTACGACGGTTCCCAAATCCCGGCCGAGTGGTTCGGATGGATGCACTACAAGACTGATCTGCCGCCGAATCGTGATGGTAATCGTCCGCATTACGCGTGGATGTTGGATCATAGTGACAATAAGTCCGGAACCAAATTTTCTTACATGCCGTACTCAACGACCCG                                                                                                                                                                   ]
[+] EMBL CNS08YAY             [                            AAAAATCTAGCGAAAACATTTGGTGCACTTTTCGTCCGCAGAGTTTCTGCCTATTCTTCGGCACAAAATGGCCCGTTTCGTAGGTTTGGATAAACTCGGCAAGCTGTTCAACTACATCCGCGACAATGGAGGAATCCGTGCCAGTTTGTACAAGCTGTACAGAATGGACGAGATGAAGGCTGGCCGTTTGGTGGGCGAGGACAAGTACGGCAACAAGTACTACGAAGATCCGTCCCAGTTCTATGGCCGCAATCGCTGGGTCGAGTATGCGCCGCACTGGAACCTGGAGTACGACGGTTCCCAAATCCCGGCCGAGTGGTTCGGATGGATGCACTACAAGACTGATCTGCCGCCGAATCGTGATGGTAATCGTCCGCATTACGCGTGGATGTTGGATCATAGTGACAATAAGTCCGGAACCAAATTTTCTTACATGCCGTACTCAACGACCCGCCCGAAGTTGAAGGATGGGATCCGAAAAAGTCGCTCCCGAAGTGAAGTGTTGTGTTGCCGTGTGTGTACCGTTCGATACAATATATAACAGCTTGTAGAAGATTGT        AAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCCGCCC]
[+] EMBL CNS08FQX             [                                  CTAGTTAAAACATTTGGTGCACTTTTCGTCCGCAGAGTTTCTGCCTATTCTTCGGTACAAAATGGCCCGTTTCGTAGGTTTGGATAAACTCGGCAAGCTGTTCAACTACATCCGCGACAATGGAGGAATCCGTGCCAGTTTGTACAAGCTGTACAGAATGGACGAGATGAAGGCTGGCCGTTTGGTGGGCGAGGACAAGTACGGCAACAAGTACTACGAAGATCCGTCCCAGTTCTATGGCCGCAATCGCTGGGTCGAGTATGCGCCGCACTGGAACCTGGAGTACGACGGTTCCCAAATCCCGGCCGAGTGGTTCGGATGGATGCACTACAAGACTGATCTGCCGCCGAATCGTGATGGTAATCGTCCGCATTACGCGTGGATGTTGGATCATAGTGACAATAAGTCCGGAACCAAATTTTCTTACATGCCGTACTCAACGACCCGCCCGAAGTTGAAGGATGGGATCCGAAAAAGTCGCTCCCGAAGTGAAGTGTTGTGTTGCCGTGTGTGTACCGTTCGATACAATATATAACAGCTTGTAGAAGATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGggggg      ]


>consensus_9000#3 CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAATCTAGCGAAAACATTTGGTGCACTTTT CGTCCGCAGAGTTTCTGCCTATTCTTCGGCACAAAATGGCCCGTTTCGTAGGTTTGGATA AACTCGGCAAGCTGTTCAACTACATCCGCGACAATGGAGGAATCCGTGCCAGTTTGTACA AGCTGTACAGAATGGACGAGATGAAGGCTGGCCGTTTGGTGGGCGAGGACAAGTACGGCA ACAAGTACTACGAAGATCCGTCCCAGTTCTATGGCCGCAATCGCTGGGTCGAGTATGCGC CGCACTGGAACCTGGAGTACGACGGTTCCCAAATCCCGGCCGAGTGGTTCGGATGGATGC ACTACAAGACTGATCTGCCGCCGAATCGTGATGGTAATCGTCCGCATTACGCGTGGATGT TGGATCATAGTGACAATAAGTCCGGAACCAAATTTTCTTACATGCCGTACTCAACGACCC GCCCGAAGTTGAAGGATGGGATCCGAAAAAGTCGCTCCCGAAGTGAAGTGTTGTGTTGCC GTGTGTGTACCGTTCGATACAATATATAACAGCTTGTAGAAGATTGTAAAAAAAAAAAAA AAAAAAAAAAGGCCACATGTGCCCGAGCTGCCGCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9000#0      --------------------------------CGACCCACGCGTCCGGCTGAGCTCCAAC 28
consensus_9000#3      ------------------------------------------------------------
consensus_9000#2      ---------------------------------------------CCGCGGACGCGTGGG 15
consensus_9000#1      GACATGGTTTAACTGAAGGGTGAAAGTTTATTTTAATCTTAGTGACGCTTAATATTGTAC 60
                                                                                  

consensus_9000#0      CTTTGCGTTACCCAGCAGAAGGAGCTCGACGAGCTGATGCTGAAGCTTGACGGAACCGAG 88
consensus_9000#3      ------------------------------------------------------------
consensus_9000#2      ATCGTCGTCGACGCACGTCGTGTTCGCGGTTGTTCAGTGAGTGAGCTGCCAAAGTTCGAG 75
consensus_9000#1      AGTAAAAATATCTTACGATTTCTCTTTTACCGGCCCATACGCGACATATACATTGAAAGT 120
                                                                                  

consensus_9000#0      AACAAGTCGAAGCTCGGTGCCAACGCTATTCTGGGCGTTTCGTTGGCCATCTGCAAGGCC 148
consensus_9000#3      ------------------------------------------------------------
consensus_9000#2      TTCCAACC-ATGGTCCGTATCAGCGTGCTGGCCGATGCCCTCAAGTGCATCAACAACGCG 134
consensus_9000#1      GACACAGTAATATTCGAGCTCAAACATAAAATGGATTGAAAGATTTTCTTTAAAATTATG 180
                                                                                  

consensus_9000#0      G-GCGCTGCCAAGAAGGGAGTCCCGCTGTACAAACACA-TCGCTGATCTCGCTGGCAATG 206
consensus_9000#3      ---------------------CCGCCCACGCGTCCGC--CCACGCGTCCGGAAGAATCTA 37
consensus_9000#2      GAGAAGCGCGGCAAGCGCCAGGTCCTCATCCGGCCGAACTCGAAGGTCGTGATCAAGTTC 194
consensus_9000#1      CACCACATTCGTGTAAACAATCTAATCTTG-ATGTATATGCCCTGTCTTTAGTGCAATTA 239
                                                              *                 * 

consensus_9000#0      GCAACAT-CATCCTGCCGGTGCCGGCCTTCAACGTCA--TCAACGGTGGTAGCCACGC-- 261
consensus_9000#3      GCGAAAA-CAT----TTGGTGC--ACTTTT--CGTCC--GCAGAGTTTCTGCCTATTCTT 86
consensus_9000#2      CTGAC---CGTCATGATGAAGCACGGCTACATCGGCGAGTTCGAGATCGTGGACGATCAT 251
consensus_9000#1      GAAATATGCAAACCTATAATTTTAAGCTACACCACATTCAGAGAGTTCATCAATAAATGA 299
                         *    *                  *    *           * *  *          

consensus_9000#0      CG--GCAACAAGCTGGCCATGCAGGAGTTCATGATCCTGCCGACCGGTGCGTCGTCCTTT 319
consensus_9000#3      CG--GCACAAAATGGCCCGTTTCGTAGGTTTGGATAAACTCGGCAAGCTGTTCAACTACA 144
consensus_9000#2      CGCAGCGGCAAGGTGGTGGTCAATCTGACC--GGTCGCCTCAACAAGGCCGGCATCATCT 309
consensus_9000#1      AGATATATAAACTTCATTGCAATTAGGAGAAAGATAACCCGCTGTAGTGCGAAAGAGAAA 359
                       *       **               *     * *           *             

consensus_9000#0      ACCGAGGCGATGAAG--ATCGGCAGCGAGGTGTACCACCACCTGAAGA-----ACGTCAT 372
consensus_9000#3      TCCGCGACAATGGAGGAATCCGTGCCAGTTTGTACAAGC-TGTACAGA-----ATG---- 194
consensus_9000#2      CGCCCCGGTTCGACGTCGCCCTCAACGATATCGAGCGGTGGACCAACA-----ACCTGCT 364
consensus_9000#1      ATGTCAAGTAAAGGATTTTTTTTTGCAACGAATACAAATAGTTCTACGCACACATGTTTT 419
                                               *       *           *       *      

consensus_9000#0      CAAGGCCAAGTTCGGTCTGG-ACGCGACGGCCGTCGGTGATGAGGGCGGCTTCGCCCCCA 431
consensus_9000#3      ---GACGAGATGAAGGCTGG-CCGTT-TGGTGGGCGAGGACAAGTACGGC---------A 240
consensus_9000#2      GCCCTCCCG--TCAGTTTGG-CTACG-TCGTCCTGACTACCAGCGGTGGCATCATGGATC 420
consensus_9000#1      AATGATTTAGGCCTTTTTGGTCTACGATTTATGCTTCTTCCCGAAGTGGC--CGAAGTGT 477
                                       ***                           ***          

consensus_9000#0      ACATCCTGGAGAACAAGGAAGCGCTGAACCTGATCCA-GGACGCCATCGCCAAGGCC--G 488
consensus_9000#3      ACA------AGTACTACGAAGATCCGTCCCAGTTCTATGGCCGCAATCGCTG-GGTC--G 291
consensus_9000#2      ACG----AGGAGGCCAGGAGGAAGCATCTGGGAGGAAAGATTCTGGGCTACTTCTTCTAG 476
consensus_9000#1      ACTGAACGATTTTCGGCGGATATCCAA-TTAGATCCATGGCAGCGTGAAATCCATACT-A 535
                      **           *   *             *    * *                 *   

consensus_9000#0      GCTACACCGGCAAGGTCGAGATCGGCATGGACGT---GG-CCGCGTC-CGAGTTCCA--- 540
consensus_9000#3      AGTATGC--GCCGCACTGGAACCTG---GAGTAC---GA-CGGTTCC-CAAATCCCG--- 338
consensus_9000#2      AGTAGACCAGCAACAGCAACTCCCCCTTACCCAG---AAACAGCGCTTCATATGCAA--- 530
consensus_9000#1      AACACGCT-GCATCACCGCGCACCGTGTGGTTATTTGAAATCGCGACTTGGGTGCAACCG 594
                         *  *  **           *                   *         * *     

consensus_9000#0      ---CAAGGAGGGCAAGTACGATC-TGGACTTCAAGA---AC----CCGAAGTCGGACCCG 589
consensus_9000#3      ---GCCGAGTGGTTCGGATGGA--TGCACTACAAGACTGAT----CTGCCGCCGAATCGT 389
consensus_9000#2      ---AAAAAAGAACACATACACA--CACACAACAGAGAC-AG----AGACATGAGAAACTG 580
consensus_9000#1      CCTAATACGCAACACAACGGTGCTCGCGTGGCCGGTTTCATTCTACTTTAAGAGCACTTC 654
                                                     *       *             * *    

consensus_9000#0      AGCGCCTGGTTGACGCCCGACGCGCTG----GAGCAGATGTACCA---GGGCTTCATCAA 642
consensus_9000#3      GATGGTAATCGTCCGCATTACGCGTGG----ATGT---TGGATCA---TAGTGACAATAA 439
consensus_9000#2      TGCGGTGGGTGGAGAGAGCTTGCGTTGC---GCGTGCCTAAAACCCGCTGGCTTCCACTT 637
consensus_9000#1      TTTCCTTTCCTTACGGATGATTTGTTCTTCGGATCGAACGGATAACATACATATCGCTAC 714
                                             *                 *            *     

consensus_9000#0      GGACTTCCC-GATCGTGAGCATTGAGGATCCCTTCGACCAGGACCACTGGGACGCGTGGA 701
consensus_9000#3      G----TCCG-GAACCAAATTTTCTTACATGCCGTACTCAACGACCCGCCCGAAGT-TGAA 493
consensus_9000#2      TACACTCCG-GGTGTCGAGGAACTTATTTTAAGAAGTGCAAAAGTGGCTGAACGG-CGCG 695
consensus_9000#1      GATTTTCCCAGGTTTCGTTTTCCTCCTATCTCTCGCTACAAACCAGAGCGATCTCACACA 774
                           ***  *                 *          *                    

consensus_9000#0      GCAAGATAACTGCCA----ACACCACGATCCAGATCGTCGGCGACGAT-CTGACCGT-CA 755
consensus_9000#3      GGATGGGATCCGAAA----AAGTCGCTCCCGAAGTGAAGTGTTGTGTTGCCGTGTGTGTA 549
consensus_9000#2      CTGTGACTACTGACGTTGCGCGTCAACAGCGGTGAGAAAGGTGGAGCGTTTGTTAACACA 755
consensus_9000#1      TTGTCTCAGCCTTTTTATTTCATACGATTTTCTTTTTACAGTAACAATTTAGCTTATGTA 834
                               *                              *          *       *

consensus_9000#0      CCAACCCGTGCA-GAGCGGGTTAGTTTGGTCAG-TGGTGTCGTACGTTGAAGAAGGGCCA 813
consensus_9000#3      CCGTTCGATACA-ATATATAACAGCTTG--TAG-AAG-ATTGTAAAAAAAAAAAAAAAAA 604
consensus_9000#2      AAAGCTGGCAAATATAGAGAAAAGCGCATGTACCTACCACAAAAAAAAAAAAAAAAAAAA 815
consensus_9000#1      GCTCTCTCCATCTCTCTGTTTCTCTCGCACCACCCTGCAGCAGCAGAACAACAGTGAGTA 894
                                                     *                 ** *      *

consensus_9000#0      GGGAGCGACGACCTAGTCTCAGATGTGCAGATGTGCACTCAACATTAGTCGTCCTGTGAG 873
consensus_9000#3      AAAAAAGGCCACAT-GTGCCCGAGCTGCCGCCC--------------------------- 636
consensus_9000#2      AAAAAAGGCCACAT-GTGCCCGAGCGGGGGGGGG-------------------------- 848
consensus_9000#1      ATAGTAGACATACTTATGTGTGTTTGGGTGCGGATTTCGAGGAGCCTCGTGCCGATCTTG 954
                            * *    *  *    *    *  *                              

consensus_9000#0      CGAAACCTCTCACCCCGACCACCATCATCATCCTCTTCGCTGTTGACGCAAGCCAACTTA 933
consensus_9000#3      ------------------------------------------------------------
consensus_9000#2      ------------------------------------------------------------
consensus_9000#1      C----------------------------------------------------------- 955
                                                                                  

consensus_9000#0      CAGTAAGACCCACTAGCCCCGTAGCGCCCACAACAACTCACCCCACCAACTTGAACCTCG 993
consensus_9000#3      ------------------------------------------------------------
consensus_9000#2      ------------------------------------------------------------
consensus_9000#1      ------------------------------------------------------------
                                                                                  

consensus_9000#0      GTATTTATCGTCATGAAGCTCTAATACGCAAGAAGCATAAATTGTAAGGCTTAAAGTTAT 1053
consensus_9000#3      ------------------------------------------------------------
consensus_9000#2      ------------------------------------------------------------
consensus_9000#1      ------------------------------------------------------------
                                                                                  

consensus_9000#0      TGAATGTTATAATTGTTAAATGAAAGTGTGACAAGTACGTTTGTCAATGCATTACTGAAA 1113
consensus_9000#3      ------------------------------------------------------------
consensus_9000#2      ------------------------------------------------------------
consensus_9000#1      ------------------------------------------------------------
                                                                                  

consensus_9000#0      GTACATGATCATTCGATAATAA 1135
consensus_9000#3      ----------------------
consensus_9000#2      ----------------------
consensus_9000#1      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)