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Anopheles gambiae
cluster # 9017 cluster # 9017       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9017#0 length = 2177 sequences # 8  
consensus_9017#1 length = 740 sequences # 4  
consensus_9017#2 length = 632 sequences # 1  

consensusID : consensus_9017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2177
fasta sequence
                              [CCGCGGACGCGTGGGTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCACGTTGGATATGTATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAACACTCGAATAGCTCTCCAAACACGCACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCTCCACACCATTACCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTTGACGAAGCAACCAACAACATTCACTATCACTAAACAGAACACACGCGCGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGCCGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGCTTTAAATCTGATGTGGAGCTTCAGCTACTACACCTCCCCCATCCTGGTGTCGATCCTGTATCGGCGCGGTTACTTTGTCGCCGAATCGGTTGGCCCCTTTGCCAAGGTAACGACCGGGCTGGGACTGCTGGTGGCCATGTCGCTCTGTATGCGCGGTCTCGGCCGTTCGATGCGACGTTCGACGATGTGCTGCAGCTAGCGTTGCCCCGCATGCCGGAACAGATCTCCAACATTGTCAAGATCGCCGTGCGGGATTATGTGAATCTGAACAACACTGAGCTGATCGTCCGCTACAATGGGCCGGTGTTGCTGATCAGACGCACGGAGGATGAAATTATTTGCTCAGAAGATGCCAACCTTGGTACAAATAGGGGAAATTTCCTGCTCATTAGTATGCTTAAGTATCGATTCCCAAACATTCTCAAACCGGAACAGGAAACCTATGCGAAGGAACTGCTATCGAAACCGGTCGATTTCATCAAGGATGTACCGGAACAGTATTGCATGTCACTGCTCATGTCCTACCTTAACGACAACGGTAACAATGGAACGAGCCGGAGCTATCCGATCGAAATCGGTGCCGAATATACGACGGAGCAGCGCAACTCTATGGTCAAATTCTTGATTAAAAAGTACTTGGCAGACTTTAAATCGACCCACTGCACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTGGGAAATTCCAACCGAAACAGACTACGTATTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGAGGTAAGCTGTGGCTGCTTTATTTCGTTTCGTGG--GTGTGTGTGTTTGTTTCCTCTTCGTTTTCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTGGGTTTTCTAGACATTACAATTGGTCAGCTTATCTATGCGCCCCTTAACACCTCCCGTTTGTGGATGGTTTTCTTCTCTCGTGTTAAGAGTC-TTTTTTGCTAAAATGACTTCAATCACTTTCCCAAAATGCTTGTAATGTTCTGTAACTGAATCAAATGTTCTCCATATTTCCCCTACTTAGGGATAAACTTACCGGCACAGTTAAGTGAAAGTTGTCCAATATTTAT-ATACGCAAATAAATAATATTTGCCGCAGAGAGATCGA-TCGGTGTG----CAGAGACA-GGCAGACAGAACTCCCAATTTGTGGATCATTTTGCATTGCGCTT-GCGAAGGGAGCTAGAAAGCGAAATATCTAAATGGCTA-CCACAAA-TGTACTAAAACAATTCCA-GATATTTACCCCCGGAGAAACTGAAAGAGAA-C-TGATAAACAGCGAAAGAGATTAGGCGGATGTAAAGGATGGGTTGAAAAGAAAGCTGAAACATTCTTATATGATATGATCTTCTCACTTACTGTTTGATGTATGGAAGTTTGG-AGCAGGTAGGAAGGCAAAACGAGGCAAGCATGACCTGTGCGCGTGTGTACCACCATCGCC-CTTTAAAGGT-------AGTTTTCAACGACAAAAGAAACAAGAAACCAAATAACCAGGATACTATTTTCCTGCGCCCAAACTAAGCAGTGAACAGATCTTAACTATATTTTA-CCCGGAGGGTATATAATTATCCATAGAATCGGAATACGGCTGGGGCTGGTGGATACAAAGATAAAACCTCACATTGTAACGTACACTCGTGCGGGATTCTGC]

[+] EMBL BM608712             [CCGCGGACGCGTGGGTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCACGTTGGATATGTATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAACACTCGAATAGCTCTCCAAACACGCACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCTCCACACCATTACCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTTGACGAAGCAACCAACAACATTCACTATCACTAAACAGAACACACGCGCGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGCCGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGCTTTAAATCTGATGTGGAGCTTCAGCTACTACACCTCCCCCATCCTGGTGTCGATCCTGTATCGGCGCGGTTACTTTGTCGCCGAATCGGTTGGCCCCTTTGCCAAGGTAACGACCGGGCTGGGACTGCTGGTGGCCATGTCGCTCTGTATGCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX618082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTAAATCTGATGTGGAGCTTCAGCTACTACACCTCCCCCATCCTGGTGTCGATCCTGTATCGGCGAGGTTACTTTGTCGCCGAATCGGTTGGCCCCTTTGCCAAGGTAACGACCGGGCTGGGACTGCTGGTGGCCATGTCGCTCTGTATGCGCGGTCTCGGCCGTTCGATGCGACGTTCGACGATGTGCTGCAGCTAGCGTTGCCCCGCATGCCGGAACAGATCTCCAACATTGTCAAGATCGCCGTGCGGGATTATGTGAATCTGAACAACACTGAGCTGATCGTCCGCTACAATGGGCCGGTGTTGCTGATCAGACGCACGGAGGATGAAATTATTTGCTCAGAAGATGCCAACCTTGGTACAAATAGGGGAAATTTCCTGCTCATTAGTATGCTTAAGTATCGATTCCCAAACATTCTCAAACCGGAACAGGAAACCTATGCGAAGGAACTGCTATCGAAACCGGTCGATTTCATCAAGGATGTACCGGAACAGTATTGCATGTCACTGCTCATGTCCTACCTTAACGACAACGGTAACAATGGAACGAGCCGGAGCTATCCGATCGAAATCGGTGCCGAATATACGACGGAGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX606022             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCCTGCTCATTAGTATGCTTAAGTATCGATTCCCAAACATTCTCAAACCGGAACAGGAAACCTATGCGAAGGAACTGCTATCGAAACCGGTCGATTTCATCAAGGATGTACCGGAACAGTATTGCATGTCACTGCTCATGTCCTACCTTAACGACAACGGTAACAATGGAACGAGCCGGAGCTATCCGATCGAAATCGGTGCCGAATATACGACGGAGCAGCGCAACTCTATGGTCAAATTCTTGATTAAAAAGTACTTGGCAGACTTTAAATCGACCCACTGCACACCGCTGCCGGAAGAATTCTTCCAAATGCCGTGGGAAGTTCCAACCGAAACAGACTACGTATTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGAGGTAAGCTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM608113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccGCTTAAGTATCGATTCCCAAACATTCTCAAACCGGAACAGGAAACCTACGCGAAGGAACTGCTATCGAAACCGGTCGATTTCATCAAGGATGTACCGGAACAGTATTGCATGTCACTGCTCATGTCCTACCTTAACGACAACGGTAACAATGGAACGAGCCGGAGCTATCCGATCGAAATCGGTGCCGAATATACCACGGAGCAGCGCAACTCTATGGTCAAATTCTTGATTAAAAAGTACTTGGCAGACTTTAAATCGACCCACTGCACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTGGGAAATTCCAACCGAAACAGACTACGTTTTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGAGGTAAGCTGTGGCTGCTTTATTTCGTTTCGTGGGTGTGTGTGTGTTTGTTTCCTCTTCGTTTTCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTGGGTTTTCTAGACATTACAATTGGTCAGGTTATCTATGCGCCCCTTAACACCTCCCGTTTGTGGATGATTTTCTTCTCTCCTGATAAGAGTCTTTTTTTGCCAAAATGACTTCAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX620230             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCGAAGGAACTGCTATCNAAACCGGTCGATTTCATCAAGGATGTACCGGAACAGTATTGCATGTCACTGCTCATGTCCTACCTTAACGACAACGGTAACAATGGAACGAGCCGGAGCTATCCGATCGAAATCGGTGCCGAATATACGACGGAGCAGCGCAACTCTATGGTCAAATTCTTGATTAAAAAGTACTTGGCAGACTTTAAATCGACCCACTGCACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTGGGAAATTCCAACCGAAACAGACTACGTTTTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGAGGTAAGCTGTGACTGCTTTATTTCGTTTCGTGG  GTGTGTGTGTTTGTTTCCTCTTCGTTTTCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTGGGTTTTCTAAACATTACAATTGGTCAGCTTATCTATGCGCCCCTTGAAACCTCCCGTTTGTGGATGGTTTTCTTCTCTCGTGTTAAGAGTG TTTTTTGCTAAAAAGACCTCAATGACTTTCCCAAAATGCTTGTAATGTTCTGTAACTGAATCAAATGTTCTCCATATTTCCCCTACTTAGGGATAAACTTACCGGCACAGTTAAGTGAAAGTTGTCCAATATTTAT ATACGCAAATAAATAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX612717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGACTACGTATTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGAGGTAAGCTGTGGCTGGTTTATATCGTTTCGTGG  GTGTGTGTGTTTGTTTCCTCTTCGTTTTCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTGGGTTTTCTAGACAATACAATTGGTCAGCTTATCTATGCGCCACTTCACACCTCCCGTTTGTGGATGGTTTTCTTCTCTCGTGTTAAGAGTC TTTTTTGCTAAAATGACTTCAATTAC TTCCCAAAATGCTTGTAATGCTCTGTAACTGAATCAAATGTTCTCTATATTGTCCCTGCTTAGGGAAAAACTTACCGGCACAGTTAAGTGAAAGTTGTCCAATATTTAT ATACGCAAATAAATAATATTTGCCGCAGAGAGATCGA TCGTTGTG    CAGAGACA GGCAGACAGAACTCCCAATTTGTGGATCATTTTGCATTGCGCTT GCGAAGGGAGCTAGAAAGCGAAATATCTAAATGGCTA CCACAAA TGTACTAAAACAATCCCA GATATTTACCCCCGGAGAAACTGAAAGAGAA C TGATAAACAGCGAAAGAGATTAGGCGGATGTAAAGGATGGGTTGAAAAGAAAGCTGAAACATTCTTATATGATATGATCTTCTCACTTACTGTTTGATGTATGGAAGTTTGG AGCAGGTAGGAAGGCAAAACGAGGCAAGCATGACCTGTGCGCGTGTG                                                                                                                                                                                                                                     ]
[-] EMBL CNS08M4N             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCAATATTTATAAAACGCAAATAAATAATATTTGCCGCAGAGAGATCGA TCGGTGTGCAATCAGAGACA GGCAGACAGAACTCCCAAGTTGTGGATCATTTTGCATTGCGCTT GGGAAGGGAGCTAGAAAGCGAAATATCTAAATGGCTA CCACAAA TGTACTAAAACAATTCCA GATATTTATCCCC GAGAAACTGAAAGGGAA CTTGATAAACAGCGAAAGAGATTAGGCGGATGTAAAGGATGGGTTGAAAAGAAAGCTGAAACATTCTTATATGATATGATCTTCTCACTTACTGTTTGATGTATGG AGTTTGG GGCAGGTAGGAAGGCAAAACGAGGCAAGCATGACCTGTGCGCGTG GTACCACCATCGCCTCTTTAAAGGTAGATGGCAGTTTTCAACGACAAAAGAAACAAGAAACCAAATAACCAGGATACTATTTTCCTGCGCCCAAACTAAGCAGTGAACAGATCTTAACTATATTTTA CCCGGAGGGTATATAATTATCCAT                                                                              ]
[-] EMBL BX466461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGATCGACTCGGTGTC    CAGAGACACGGCAGACAGAACTCCCAATTTGTGGATCATTTTGCATTGCGCTTGGCGAAGGGAGCTAGAAAGCGAAATATCTAAATGGCTACCCACAAACTGTACTAAAACAATTCCACGATATTTACCCCCGGAGAAACTGAAAGAGAACC TGATAAACAGCGAAAGAGATTAGGCGGATGTAAAGGATGGGTTGAAAAGAAAGCTGAAACATTCTTATATGATATGATCTTCTCACTTACTGTTTGATGTATGGAAGTTTGGTAGCAGGTAGGAAGGCAAAACGAGGCAAGCATGACCTGTGCGCGTGTGTACCACCATCGCC CTTTAAAGGT       AGTTTTCAACGACAAAAGAAACAAGAAACCAAATAACCAGGAAACTATTTTCCTGCGCCCAAACTAAGCAGTGAACAGATCTTAACTATATTTTACCCCGGAGGGTATATAATTCTGGCTAGAATCGGAATACGGCTGGGGCTGGTGGATACAAAGATAAAACCTCACATTGTAACGTACACTCGTGCGGGATTCTGC]


>consensus_9017#0 CCGCGGACGCGTGGGTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGG GCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCACGTTGGATATGTATAGATTGGTGA TTAGACAACGATTCCGCGCAGTCTATCACCGAAGAACACTCGAATAGCTCTCCAAACACG CACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGT AGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCTCCACACCATTACCGTGGGCATCCT GTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTTGACGAAGCAACCAACAACATTCACTATC ACTAAACAGAACACACGCGCGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGA GACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGCCGGGAACGTTGGAAAAAT ATGGAGACCAGCTCCTGACAGCTTTAAATCTGATGTGGAGCTTCAGCTACTACACCTCCC CCATCCTGGTGTCGATCCTGTATCGGCGCGGTTACTTTGTCGCCGAATCGGTTGGCCCCT TTGCCAAGGTAACGACCGGGCTGGGACTGCTGGTGGCCATGTCGCTCTGTATGCGCGGTC TCGGCCGTTCGATGCGACGTTCGACGATGTGCTGCAGCTAGCGTTGCCCCGCATGCCGGA ACAGATCTCCAACATTGTCAAGATCGCCGTGCGGGATTATGTGAATCTGAACAACACTGA GCTGATCGTCCGCTACAATGGGCCGGTGTTGCTGATCAGACGCACGGAGGATGAAATTAT TTGCTCAGAAGATGCCAACCTTGGTACAAATAGGGGAAATTTCCTGCTCATTAGTATGCT TAAGTATCGATTCCCAAACATTCTCAAACCGGAACAGGAAACCTATGCGAAGGAACTGCT ATCGAAACCGGTCGATTTCATCAAGGATGTACCGGAACAGTATTGCATGTCACTGCTCAT GTCCTACCTTAACGACAACGGTAACAATGGAACGAGCCGGAGCTATCCGATCGAAATCGG TGCCGAATATACGACGGAGCAGCGCAACTCTATGGTCAAATTCTTGATTAAAAAGTACTT GGCAGACTTTAAATCGACCCACTGCACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTG GGAAATTCCAACCGAAACAGACTACGTATTTACATAAGCTGCGGAACACTTTGTGCTATT ATAGTATAAGTTTCTGGTCGGTTGAGGTAAGCTGTGGCTGCTTTATTTCGTTTCGTGGGT GTGTGTGTTTGTTTCCTCTTCGTTTTCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTG GGTTTTCTAGACATTACAATTGGTCAGCTTATCTATGCGCCCCTTAACACCTCCCGTTTG TGGATGGTTTTCTTCTCTCGTGTTAAGAGTCTTTTTTGCTAAAATGACTTCAATCACTTT CCCAAAATGCTTGTAATGTTCTGTAACTGAATCAAATGTTCTCCATATTTCCCCTACTTA GGGATAAACTTACCGGCACAGTTAAGTGAAAGTTGTCCAATATTTATATACGCAAATAAA TAATATTTGCCGCAGAGAGATCGATCGGTGTGCAGAGACAGGCAGACAGAACTCCCAATT TGTGGATCATTTTGCATTGCGCTTGCGAAGGGAGCTAGAAAGCGAAATATCTAAATGGCT ACCACAAATGTACTAAAACAATTCCAGATATTTACCCCCGGAGAAACTGAAAGAGAACTG ATAAACAGCGAAAGAGATTAGGCGGATGTAAAGGATGGGTTGAAAAGAAAGCTGAAACAT TCTTATATGATATGATCTTCTCACTTACTGTTTGATGTATGGAAGTTTGGAGCAGGTAGG AAGGCAAAACGAGGCAAGCATGACCTGTGCGCGTGTGTACCACCATCGCCCTTTAAAGGT AGTTTTCAACGACAAAAGAAACAAGAAACCAAATAACCAGGATACTATTTTCCTGCGCCC AAACTAAGCAGTGAACAGATCTTAACTATATTTTACCCGGAGGGTATATAATTATCCATA GAATCGGAATACGGCTGGGGCTGGTGGATACAAAGATAAAACCTCACATTGTAACGTACA CTCGTGCGGGATTCTGC



consensusID : consensus_9017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 740
fasta sequence
                              [CCGAAAAACAACACAAAAAGGCTACAAAAAAAAACTAATTACATAAAAAAAAAACTACCAATACATGCTGTAGATTTTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCAAGTTGGATATGTATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAAAGCTCGAATAGCTCTCCAAACACGCACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCACCACACCATTACCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTGTGCGCATACGTCCCCCTCCCAACGAACGGGTGGCAATTTGTTG--TTT-TTTTTTTTTTAATTTTGTCGCGGCTTCAGTGACGAAGCAACCAACAACATTCACTATCACTAAACAGAACATACGCGTGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGCCGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGC-TTTAAATCTGATGTGGAGCTTCAGCTACTACACCTCCCCCATCCTGGTGTCGATCCTGTATCGACGAGGTTACTTTGTCGCCGAATCGGTTGGCCCCTTT]

[+] EMBL BM581624             [CCGAAAAACAACACAAAAAGGCTACAAAAAAAAACTAATTACATAAAAAAAAAACTACCAATACATGCTGTAGATTTTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCAAGTTGGATATGTATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAAAGCTCGAATAGCTCTCCAAACACGCATTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCACCACACCATTACCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTGTGCGCATACGTCCCCCTCCCAACGAACGGGTGGCAATTTGTTG  TTTCTTTTTTTTTTAATTTTGTCGCGGCTTCAGTGACGAAGCAACCAACAACATTCACTATCACTAAACAGAACATACGCGTGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGCCGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGC TTTAAATCTGATGTGGAG                                                                                  ]
[+] EMBL BM601262             [                                           ccgtAAAAAAACTACCAATACATGCTGTAGATTTTGCATTTCACGTTTCCTGTCCGCTCGGCTCGACTTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCAAGTTGGATATGTATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAAAGCTCGAATAGCTCTCCAAACACGCACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCACCACACCATTACCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTGTGCGCATACGTCCCCCTCCCAACGAACGGGTGGCAATTTGTTGTTTTT TTTTTTTTTTAATTTTGTCGCGGCTTCAGTGACGAAGCAACCAACAACATTCACTATCACTAAACAGAACATACGCGTGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGCCGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGCTTTTAAATCTGATGTGGAGCTTCAG                                                                            ]
[+] EMBL BM619015             [                                                                  ccgGTAGATTTTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCACGTTGGATATGTATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAACACTCGAATAGCTCTCCAAACACGCACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCTCCACACCATTACCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTGTGCGCATAC                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM638689             [                                                                          ccgTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCAAGTTGGATATGTATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAAAGCTCGAATAGCTCTCCAAACACGCACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCACCACACCATTACCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTGTGCGCATACGTCCCCCTCCCCACGAACGGGTGGCAATTTGTTG  TTT TTTTTTTTTTAATTTTGTCGCGGCTTCAGTGACGAAGCAACCAACAACATTCACTATCACTAAACAGAACATACGCGTGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGGACAACTATGAGCCGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGC TTTAAATCTGATGTGGAGCTTCAGCTACTACACCTCCCCCATCCTGGTGTCGATCCTGTATCGACGAGGTTACTTTGTCGCCGAATCGGTTGGCCCCTTT]


>consensus_9017#1 CCGAAAAACAACACAAAAAGGCTACAAAAAAAAACTAATTACATAAAAAAAAAACTACCA ATACATGCTGTAGATTTTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACG GGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCAAGTTGGATATGTATAGATTGGT GATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAAAGCTCGAATAGCTCTCCAAACA CGCACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGC GTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCACCACACCATTACCGTGGGCATC CTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTGTGCGCATACGTCCCCCTCCCAACGAA CGGGTGGCAATTTGTTGTTTTTTTTTTTTTAATTTTGTCGCGGCTTCAGTGACGAAGCAA CCAACAACATTCACTATCACTAAACAGAACATACGCGTGTGGACAACATGCCATTCCATA AGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGC CGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGCTTTAAATCTGATGTGGAGCT TCAGCTACTACACCTCCCCCATCCTGGTGTCGATCCTGTATCGACGAGGTTACTTTGTCG CCGAATCGGTTGGCCCCTTT



consensusID : consensus_9017#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence
                              [ACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTGGGAAATTCCAACCGAAACAGACTACGTTTTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGAGGNAAGCTGTGACTGCTTTATTTCGTTTCGTGGGTGTGTGTGTTTGTTTCCTCTTCGTTTTCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTGGGTTTTCTAAACATTACAATTGGTCAGCTTATCTATGCGCCCCTTGAAACCTCCCGTTTGTGGATGGTTTTCTTCTCTCGTGTTAAGAGTGTTTTTTGCTAAAAAGACCTCAATGACTTTCCCAAAATGCTTGTAATGTTCTGTAACTGAATCAAATGTTCTCCATATTGCCCCTACTTAGGGATAAACTTACCGGCACAGTTAAGTGAAAGTTGTCCAATATTTATATACGCAAATAAATAATATTTGCCGCAGAGAGATCGATCGGTGTGCAATCAGAGACAGGCAGACAGAACTCCCAATGTGACAGAAAGCGAAATATCTAAATGGCTACCACAAATGTACTAAAACAATTCCGGATATTTACCCCCGGAGAAACTGAAAGAGAACTGATAAACAGCGAAAGAGATTTGGCCG]

[+] EMBL BX620406             [ACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTGGGAAATTCCAACCGAAACAGACTACGTTTTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGAGGNAAGCTGTGACTGCTTTATTTCGTTTCGTGGGTGTGTGTGTTTGTTTCCTCTTCGTTTTCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTGGGTTTTCTAAACATTACAATTGGTCAGCTTATCTATGCGCCCCTTGAAACCTCCCGTTTGTGGATGGTTTTCTTCTCTCGTGTTAAGAGTGTTTTTTGCTAAAAAGACCTCAATGACTTTCCCAAAATGCTTGTAATGTTCTGTAACTGAATCAAATGTTCTCCATATTGCCCCTACTTAGGGATAAACTTACCGGCACAGTTAAGTGAAAGTTGTCCAATATTTATATACGCAAATAAATAATATTTGCCGCAGAGAGATCGATCGGTGTGCAATCAGAGACAGGCAGACAGAACTCCCAATGTGACAGAAAGCGAAATATCTAAATGGCTACCACAAATGTACTAAAACAATTCCGGATATTTACCCCCGGAGAAACTGAAAGAGAACTGATAAACAGCGAAAGAGATTTGGCCG]


>consensus_9017#2 ACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTGGGAAATTCCAACCGAAACAGACTAC GTTTTTACATAAGCTGCGGAACACTTTGTGCTATTATAGTATAAGTTTCTGGTCGGTTGA GGNAAGCTGTGACTGCTTTATTTCGTTTCGTGGGTGTGTGTGTTTGTTTCCTCTTCGTTT TCAGACAAAAGCAGTACAGTTTTCTGTATTTGGTGGGTTTTCTAAACATTACAATTGGTC AGCTTATCTATGCGCCCCTTGAAACCTCCCGTTTGTGGATGGTTTTCTTCTCTCGTGTTA AGAGTGTTTTTTGCTAAAAAGACCTCAATGACTTTCCCAAAATGCTTGTAATGTTCTGTA ACTGAATCAAATGTTCTCCATATTGCCCCTACTTAGGGATAAACTTACCGGCACAGTTAA GTGAAAGTTGTCCAATATTTATATACGCAAATAAATAATATTTGCCGCAGAGAGATCGAT CGGTGTGCAATCAGAGACAGGCAGACAGAACTCCCAATGTGACAGAAAGCGAAATATCTA AATGGCTACCACAAATGTACTAAAACAATTCCGGATATTTACCCCCGGAGAAACTGAAAG AGAACTGATAAACAGCGAAAGAGATTTGGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9017#0      CCGCGGACGCGTGGGTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGCTTCCACGACGGG 60
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      GCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCACGTTGGATATGTATAGATTGGTGA 120
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      TTAGACAACGATTCCGCGCAGTCTATCACCGAAGAACACTCGAATAGCTCTCCAAACACG 180
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      CACTCGCGGGTCAGGAAGCGAAACCTTCGGCGACAAGGTAAACCAGCAGCAGTGTGGCGT 240
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      AGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCTCCACACCATTACCGTGGGCATCCT 300
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      GTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTTGACGAAGCAACCAACAACATTCACTATC 360
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      ACTAAACAGAACACACGCGCGTGGACAACATGCCATTCCATAAGTACATTTTTACCCCGA 420
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      GACTGCTGAAGGAGTACGATGGATCGCGGGACAACTACGAGCCGGGAACGTTGGAAAAAT 480
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      ATGGAGACCAGCTCCTGACAGCTTTAAATCTGATGTGGAGCTTCAGCTACTACACCTCCC 540
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      CCATCCTGGTGTCGATCCTGTATCGGCGCGGTTACTTTGTCGCCGAATCGGTTGGCCCCT 600
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      TTGCCAAGGTAACGACCGGGCTGGGACTGCTGGTGGCCATGTCGCTCTGTATGCGCGGTC 660
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      TCGGCCGTTCGATGCGACGTTCGACGATGTGCTGCAGCTAGCGTTGCCCCGCATGCCGGA 720
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      ACAGATCTCCAACATTGTCAAGATCGCCGTGCGGGATTATGTGAATCTGAACAACACTGA 780
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      GCTGATCGTCCGCTACAATGGGCCGGTGTTGCTGATCAGACGCACGGAGGATGAAATTAT 840
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      TTGCTCAGAAGATGCCAACCTTGGTACAAATAGGGGAAATTTCCTGCTCATTAGTATGCT 900
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      TAAGTATCGATTCCCAAACATTCTCAAACCGGAACAGGAAACCTATGCGAAGGAACTGCT 960
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      ATCGAAACCGGTCGATTTCATCAAGGATGTACCGGAACAGTATTGCATGTCACTGCTCAT 1020
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      GTCCTACCTTAACGACAACGGTAACAATGGAACGAGCCGGAGCTATCCGATCGAAATCGG 1080
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      TGCCGAATATACGACGGAGCAGCGCAACTCTATGGTCAAATTCTTGATTAAAAAGTACTT 1140
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      GGCAGACTTTAAATCGACCCACTGCACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTG 1200
consensus_9017#2      -------------------------ACACCGCTGCCGGAAGAATTCTTCCAAACGCCGTG 35
consensus_9017#1      ----------CCGAAAAACAACACAAAAAGGCTACAAAAAAAAACTAATTACATAAAAAA 50
                                               * *  *** *   ** **       * *       

consensus_9017#0      GGAAATTCCAACCGAAAC---AGACTACGT-ATTTACATAAGCTGCGGAACACTTTGTGC 1256
consensus_9017#2      GGAAATTCCAACCGAAAC---AGACTACGT-TTTTACATAAGCTGCGGAACACTTTGTGC 91
consensus_9017#1      AAAACTACCAATACATGCTGTAGATTTTGCATTTCACGTTTCCTGTCCGCTCGGCTCCGC 110
                        ** * ****   *  *   *** *  *   ** ** *   ***          *  **

consensus_9017#0      TATTATAGTATAAGTTTCTGGTCGGTTGAGGTAAGCTGTGGCTGCTTTATTTCGTTTCGT 1316
consensus_9017#2      TATTATAGTATAAGTTTCTGGTCGGTTGAGGNAAGCTGTGACTGCTTTATTTCGTTTCGT 151
consensus_9017#1      TTCCACGACGGGGCTATGATGCTGTGTTAGATAAGTGCGGGCCCCTCAAGTTGGATATGT 170
                      *   *         * *   *  *  * **  ***    * *  **  * ** * *  **

consensus_9017#0      GGGTGTGTGTGTTT-------GTTTCCTCTTCGTTT----TCAGACAAAAGCAGTACAGT 1365
consensus_9017#2      GGGTGTGTGTGTTT-------GTTTCCTCTTCGTTT----TCAGACAAAAGCAGTACAGT 200
consensus_9017#1      ATAGATTGGTGATTAGACAACGATTCCGCGCAGTCTATCACCGAAGAAAGCTCGAATAGC 230
                           *  *** **       * **** *   ** *     *  * ***    * * ** 

consensus_9017#0      TTTCTGTATTTG-GTGGGTTTTCTAGACATTACAATTGGTCAGCTTATCTATGCGCCCCT 1424
consensus_9017#2      TTTCTGTATTTG-GTGGGTTTTCTAAACATTACAATTGGTCAGCTTATCTATGCGCCCCT 259
consensus_9017#1      TCTCCAAACACGCACTCGCGGGTCAGGAAGCGAAACCT-TCGGCGACAAGGTAAACCAGC 289
                      * **   *   *     *      *   *    **    ** **       *   **   

consensus_9017#0      TAACACCTCCCGT--TTGTGGATGGTTTTCTTCTCTCGTGTTAAGAGTCTTTT----TTG 1478
consensus_9017#2      TGAAACCTCCCGT--TTGTGGATGGTTTTCTTCTCTCGTGTTAAGAGTGTTTT----TTG 313
consensus_9017#1      AGCAGTGTGGCGTAGTGGCGAATCATTGTCGCCTGCCGAACAAAACCCACCACACCATTA 349
                             *  ***  * * * **  ** **  **  **    **             ** 

consensus_9017#0      CTAAAATGACTTCAATCACTTTCCCAAAATGCTTGTAA--TGTTCTGTAACTGAATC--- 1533
consensus_9017#2      CTAAAAAGACCTCAATGACTTTCCCAAAATGCTTGTAA--TGTTCTGTAACTGAATC--- 368
consensus_9017#1      CCGTGGGCATCCTGTCGGGCTGAGCGTGGAGCGAGAAAGTTGTTGTGCGCATACGTCCCC 409
                      *       *           *   *     **  * **  **** **    *   **   

consensus_9017#0      --------AAATGTTCTCCATATTTCCCCTACTTAGGGATAAACTTACCGGCACAGTTAA 1585
consensus_9017#2      --------AAATGTTCTCCATATTGCCCCTACTTAGGGATAAACTTACCGGCACAGTTAA 420
consensus_9017#1      CTCCCAACGAACGGGTGGCAATTTGTTGTTTTTTTTTTTTTAATTTTGTCGCG-GCTTCA 468
                               ** *     **  **     *  **     * ** **    **    ** *

consensus_9017#0      GTGA--AAGTTGTC--CAATATTTA-TATACGCAAATAAATAATATT--TGCCGCAGAGA 1638
consensus_9017#2      GTGA--AAGTTGTC--CAATATTTA-TATACGCAAATAAATAATATT--TGCCGCAGAGA 473
consensus_9017#1      GTGACGAAGCAACCAACAACATTCACTATCACTAAACAGAACATACGCGTGTGGACAACA 528
                      ****  ***    *  *** *** * ***    *** * *  ***    **  *   * *

consensus_9017#0      GATCGATCGGTGTGCA----GAGACAGGCAGACAGAACTCCCAATTTGTGGATCATTTTG 1694
consensus_9017#2      GATCGATCGGTGTGCAATCAGAGACAGGCAGACAGAACTCCCAATGTGA----------- 522
consensus_9017#1      TGCCATTCCATAAGTACATTTTTACCCCGAGACTGCTGAAGGAGTACGATGGATCGCGGG 588
                         *  **  *  * *       **    **** *       * *  *            

consensus_9017#0      CATTGCGCTTGCGAAGGGAGCTAGAAAGCGAAATATCTAAA----TGGCTACCACAAATG 1750
consensus_9017#2      ---------------------CAGAAAGCGAAATATCTAAA----TGGCTACCACAAATG 557
consensus_9017#1      ACAACTACGAGCCGGGAACGTTGGAAAAATATGGAGACCAGCTCCTGACAGCTTTAAATC 648
                                             ****   *   *    *     ** *  *   **** 

consensus_9017#0      TACTAAAACAATTCCAGATATTTACCCCCGGAGAAACTGAAAGAGAACTGATAAACAGCG 1810
consensus_9017#2      TACTAAAACAATTCCGGATATTTACCCCCGGAGAAACTGAAAGAGAACTGATAAACAGCG 617
consensus_9017#1      TGATGTGG-AGCTTCAGCTACTACACCTCCCCCATCCTGGTGTCGATCCTGTAT-CGACG 706
                      *  *     *  * * * ** *   ** *    *  ***     ** *   **  *  **

consensus_9017#0      AAAGAGATTAG--GCGGATGTAAAGGATGGGTTGAAAAGAAAGCTGAAACATTCTTATAT 1868
consensus_9017#2      AAAGAGATTTG--GCCG------------------------------------------- 632
consensus_9017#1      AGGTTACTTTGTCGCCGAATCGGTTGGCCCCTTT-------------------------- 740
                      *      ** *  ** *                                           

consensus_9017#0      GATATGATCTTCTCACTTACTGTTTGATGTATGGAAGTTTGGAGCAGGTAGGAAGGCAAA 1928
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      ACGAGGCAAGCATGACCTGTGCGCGTGTGTACCACCATCGCCCTTTAAAGGTAGTTTTCA 1988
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      ACGACAAAAGAAACAAGAAACCAAATAACCAGGATACTATTTTCCTGCGCCCAAACTAAG 2048
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      CAGTGAACAGATCTTAACTATATTTTACCCGGAGGGTATATAATTATCCATAGAATCGGA 2108
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      ATACGGCTGGGGCTGGTGGATACAAAGATAAAACCTCACATTGTAACGTACACTCGTGCG 2168
consensus_9017#2      ------------------------------------------------------------
consensus_9017#1      ------------------------------------------------------------
                                                                                  

consensus_9017#0      GGATTCTGC 2177
consensus_9017#2      ---------
consensus_9017#1      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)