These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1469 fasta sequence [ACTGGCTACAAAA-CTG-GACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACATTCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAATGCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG-AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA-GGAACGAATTTACATTCGTG-AAAAACACACAGCAAGAAAAGTGCGCAAGTCAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGAATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTTGCTGCGCTAGTGCCATGTTTATGAACAATCAGTTGT-CCTTACAAAACACGTCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTATTAAGTTCCACCGTTGTTAATGTACTTAATAAATTTTCT] [+] EMBL CNS09EE9 [ACTGGCTACAAAACCTG GACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACATTCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAATGCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCAGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTTATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGCACGAATTTACATTCGTG AAAAACACACAGCA ] [+] EMBL CNS09EDS [ GGCTACAAAA CTGAGACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACATTCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAATGCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACAC ] [-] EMBL CNS09EEA [ TAAGTAGCGATCATGTCCCTTTCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTAAGGGACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCAACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTCAA ] [-] EMBL CNS09EDT [ aaATCCTAACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTAAGGAACTCGCGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCAACTGCTTTCCCTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCATTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAATTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATGACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTCAA ] [+] EMBL CNS09IJY [ TCGTGG AACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATT CATTACTCAGATCGGGAACGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGA AGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATAACCCTTGTACAATAGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGAATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTTGCTGCGCTAGTGCCATGTTTATGAACAATCAGTTGT CCTTACAAAACACGTCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTATTAAGTTCCACCGTTGTTAATGTACTTAATA ] [-] EMBL CNS093BW [ CTGCATCAGCCCTATTACGCTTAAGTATCATAAAGTA CTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTTATTCACATTACTCAGATCGGGAGCGGTGCAGGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTCAA ] [-] EMBL CNS09IJZ [ TATCATAAAGTA CTTTCAGGCCCTGTGTGAAGGACTCGATATTATTTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGTGGGCCAATTAAGCGAACCTGATT CATTACTCAGATCGGGAAC GTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATAACCCTTGTACAATAGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGAATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTT CTGCGCTAGTGCCATGTTTATGAACAATCAGTTGT CCTTACAAAACACGTCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTATTAAG TCCACCGTTGTTAATGTACTT ] [+] EMBL CNS0969V [ AGTGGG CAATTAAGCGAACCTGATT CATTACTCAGATCGGGAACGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGA AGAGTGCGACATTGTACCACAACAAACCATTGTAATGCACAACCCTTGTACAATAGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAG AGCCAAGATTAGCCAAGTAAACCAAACACACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGGAACGAATTTACATTCGTGAAAAAACACACAGCAAGAAAAGT ] [+] EMBL BX620156 [ TCTGGTCAAAAGCGAGCAACAGTGCCGGGGCAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACA GGAACGAATTTACATTCGTG AAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGTTTGTAAGCAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCAGGTTCGTTCGCCAATTGTATTGATTGCATGCATAAACGTTATTTTGTAGATTTAATGGATTGCTGCGCGAGTGCCATGTTTATGAACAATCAGTTGTCCCTTACAAAACACGNCATGTTTGCTTGTGCGAGGCCTTCAAACCTAAGCTAGTTATAAGTTCCACCGTTGTTAATGNACTTAATAAATTTTCT] [-] EMBL CNS0969W [ TGAGCTGGGGTTGTGCAATAGCTCGCTAGATTGTAAGTAAAAGGTGAGGATAATTTTTAGTTAAAAAAAGGCTAGGCCATATCCAATGGCGGGTTCGTTTGCCAATTGTATTGATTGCATGCATAAACGTTAATTTCTAGATTTAATCGTTTG TGCGCTAGTGCCATGTTTATGAACAATCAGTTGT CCTT ] consensusID : consensus_9112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence [GCAGATCCCGCACGAGNGNGAGACAGTGGGCAATTAAGCGACACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGGTTGTGGCAAATAGCTCGGCTAGTTTGTAAAGGCAAAAAGGTGAGGATAATTTTTTCAGGTTTAACAAAAAAGGCTAGGGCCATATCCCAATGGCAGGGTTCGGTTCGCCAAATTGGTATTTGATTGCTGCATAACCGTTATTTTGNACAATTCATGGGATTGCTTGCCGCAGTTCCCTCGTTTTGACCCACTCGTNTCCTTCAC] [+] EMBL BX466171 [GCAGATCCCGCACGAGNGNGAGACAGTGGGCAATTAAGCGACACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTTATTAAAAGATTTTAATCGTTGAGCTGGGGGTTGTGGCAAATAGCTCGGCTAGTTTGTAAAGGCAAAAAGGTGAGGATAATTTTTTCAGGTTTAACAAAAAAGGCTAGGGCCATATCCCAATGGCAGGGTTCGGTTCGCCAAATTGGTATTTGATTGCTGCATAACCGTTATTTTGNACAATTCATGGGATTGCTTGCCGCAGTTCCCTCGTTTTGACCCACTCGTNTCCTTCAC] consensusID : consensus_9112#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [GATGGCTCAGCAGAATCGCCCCGACGGTATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCANACAAGCGAGGCAACAGTGCCGGAGAGCCAAGATTAGCAAGTANACATCAAACAAACAATGTCCCTTATCGGTAACGGCAGGAGTGAGCAGCACGCCACAATGAGCCGCGAAAACAAACCAGGAACGAATTTAACATTCGTTGANAAAACCAACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGATACAGAGGCTTTTAGCAATTTGATACATAGGCTCTTATGTGACCACCCACATCTTCTAANCCCGTTCCATACAATTCAAATNAAATTTNTAATTCTACTTCCCNGCGGCGCCATTGACACACAGGCACGGAACAACAAGGGGCTGTTNCGACATCTCGGGTGCAACCCCCCTGGAGTTCTCANACACCGGAACNGATGGATCACTACACTTGGCCAACTTGGTTTTCAGATCCNGAATTCTCNATACTAAATTCCGAAGCCAGACCCNACTNTTAGTATATCCCTGGCTTCACATTCTCAAAAGCACACGGAAGTTNTGNTG] [+] EMBL AL696779 [GATGGCTCAGCAGAATCGCCCCGACGGTATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAGAAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCANACAAGCGAGGCAACAGTGCCGGAGAGCCAAGATTAGCAAGTANACATCAAACAAACAATGTCCCTTATCGGTAACGGCAGGAGTGAGCAGCACGCCACAATGAGCCGCGAAAACAAACCAGGAACGAATTTAACATTCGTTGANAAAACCAACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGATACAGAGGCTTTTAGCAATTTGATACATAGGCTCTTATGTGACCACCCACATCTTCTAANCCCGTTCCATACAATTCAAATNAAATTTNTAATTCTACTTCCCNGCGGCGCCATTGACACACAGGCACGGAACAACAAGGGGCTGTTNCGACATCTCGGGTGCAACCCCCCTGGAGTTCTCANACACCGGAACNGATGGATCACTACACTTGGCCAACTTGGTTTTCAGATCCNGAATTCTCNATACTAAATTCCGAAGCCAGACCCNACTNTTAGTATATCCCTGGCTTCACATTCTCAAAAGCACACGGAAGTTNTGNTG] consensusID : consensus_9112#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence [GATCGCCGAGGTTAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTCTATTAAACAGCATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGTTTGTAAGCAAAAAGGTGAGGATAATTTTTAGTTCAAACANAAAGGCTAGGCCATATCCAATGGCAAGGTTCGTATCGCCAAATTGTACTTGATTGCCATTGCAATAAACCGTTATTTTGTAGCATTTANATGGAGTTGCTGCGCGAGTGCCATGTTTATGAACACTCANGTTGTCCTTACAAAAACACGGTCATGTACGCTTGCTGCGAGGCTTCAAACCTAAGCTAGTN] [+] EMBL AL694773 [GATCGCCGAGGTTAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGTCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTGTTAGCGAGTGTTTCTGCATGTTATCGATTTTATCGACGCATTGTTTCTGTCTATTAAACAGCATTTTAATCGTTGAGCTGGGGTTGTGCAATAGCTCGCTAGTTTGTAAGCAAAAAGGTGAGGATAATTTTTAGTTCAAACANAAAGGCTAGGCCATATCCAATGGCAAGGTTCGTATCGCCAAATTGTACTTGATTGCCATTGCAATAAACCGTTATTTTGTAGCATTTANATGGAGTTGCTGCGCGAGTGCCATGTTTATGAACACTCANGTTGTCCTTACAAAAACACGGTCATGTACGCTTGCTGCGAGGCTTCAAACCTAAGCTAGTN] consensusID : consensus_9112#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [TCGCCCGAGGTNATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGGTCATAATTANACTA] [+] EMBL AL930285 [TCGCCCGAGGTNATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAGGGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATAACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAAAGCGAGCAACAGTGCCGGAGAGCCAAGATTAGCCAAGTAAATCAAACAAACAATGTCCCCTTATCGGTAACGGCAGGAGTGAGCAGCAGCAAATGAGCCGCGAAACAACAGGAACGAATTTACATTCGTGAAAAACACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGCCCGATGCCGTCGAGGCTTTTAGCAATTATCATAGCTTTATGTGAAACAATTTTAACCGGTCATAATTANACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9112#0 ACTGGCTACAAAACTGGACAACATTTCCATGCGCTCGGATGCCAGCAAGATGCTTAACAT 60 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 TCCTATTCCGGAGCTGAAAACAATCAACAATCTACCGCCCCTGGATACGCCACTCGCAAT 120 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 GCTGTCGGAGAAACTATCGTCATTTTCTTTTGATCAAGATAAGTAGCGATCATGTCCCTT 180 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 TCATCCTGACAGGCAGTCGATTGAGTCGACCACAAGCTGTCGGTGACGGTCAGGCACTCG 240 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 CGCGAGACCCTCACAAACGCGGGCTATATCCTTTTCTTGGAGATTGATCGACTGCTTTCC 300 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 CTTTCGGTCACGGGTTAAAGCTTCATCCCAGCCCGGCAAGGATCATAATCCTGTTTGCCA 360 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 TTGGAAGGATTTCCGAGGAGATCGATTTTCCGAAAGGGATATATTTCACTGGAAGTTGAA 420 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 TTGTTCGTGGAAACGATAGTATAGCATCAACGAGGTAATTCCTACGATGCTGCATCAGCC 480 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 CTATTACGCTTAAGTATCATAAAGTACCTTTCAGGCCCTGTGTGAAGGACTCGATATTAT 540 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 TTAAGTTTAAATTGATCGTAACGTTAAATTTATTCATCGCCTAGGGAGAAAAGAGACAGT 600 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 ---------------------------------GCAGATCCCGCACGAGNGNGAGACAGT 27 consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ----------------------------------------------------GATGGCTC 8 consensus_9112#0 GGGCCAATTAAGCGAACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAG 660 consensus_9112#3 ------------------------------------------------------------ consensus_9112#1 GGGCAATTAAGCGACACCTGATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAG 87 consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 AGCAGAATCGCCCCGACGGTATTCACATTACTCAGATCGGGAGCGGTGCAAGCACCAAAG 68 consensus_9112#0 AAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 720 consensus_9112#3 -------------------------------------GATCGCCGAGGT--TAACTGGAG 21 consensus_9112#1 AAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 147 consensus_9112#4 ----------TCGCCCGAGGTNATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 50 consensus_9112#2 AAAGCTCACCAAAACTCGTACAATTTCTAGTATTTGTGACTATTGGAGAAGAAACTGGAG 128 ** * * ******** consensus_9112#0 GGATGTTACGAAGTCCGAGGGAGTGCGACATTGTACCACAACAAACCATTGTAATGCATG 780 consensus_9112#3 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 81 consensus_9112#1 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 207 consensus_9112#4 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 110 consensus_9112#2 GGATGTTACGAAGTCCGAAGGAGTGCGACATTGTACCATAACAAACCATTGTAATGCATA 188 ****************** ******************* ******************** consensus_9112#0 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 837 consensus_9112#3 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 138 consensus_9112#1 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 264 consensus_9112#4 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCAAA--AGCGAG-C 167 consensus_9112#2 ACCCTTGTACAATGGAACAATCTTGATTCCGGATCGCTTTTCTGGTCANACAAGCGAGGC 248 ************************************************ * ****** * consensus_9112#0 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAACCAAACACACAATGTCCCCTTATCG 896 consensus_9112#3 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAATCAAACAAACAATGTCCCCTTATCG 197 consensus_9112#1 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAATCAAACAAACAATGTCCCCTTATCG 323 consensus_9112#4 AACAGTGCCGGAGAGCCAAGATTAGCCAA-GTAAATCAAACAAACAATGTCCCCTTATCG 226 consensus_9112#2 AACAGTGCCGGAGAGCCAAGATTAGCAAGTANACATCAAACAAACAATGTCCC-TTATCG 307 ************************** * * * ****** ********** ****** consensus_9112#0 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 950 consensus_9112#3 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 251 consensus_9112#1 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 377 consensus_9112#4 GTAACGGCAGGAGTGAGCAGCA-GCAA--ATGAGCCGCGAAA-CAA--CAGGAACGAATT 280 consensus_9112#2 GTAACGGCAGGAGTGAGCAGCACGCCACAATGAGCCGCGAAAACAAACCAGGAACGAATT 367 ********************** ** * ************* *** ************ consensus_9112#0 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTCAAGCTCCCGTGTGC 1005 consensus_9112#3 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 306 consensus_9112#1 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 432 consensus_9112#4 TA-CATTCGT--GAAAAAC--ACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 335 consensus_9112#2 TAACATTCGTTGANAAAACCAACACAGCAAGAAAAGTGCGCAAGTGAAGCTCCCGTGTGC 427 ** ******* ***** ************************ ************** consensus_9112#0 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 1059 consensus_9112#3 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 360 consensus_9112#1 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 486 consensus_9112#4 CCGATGCCGTC---GAGGCTTTTAGCAATT--AT-CATAGCTTTATGTGAAACAATTTTA 389 consensus_9112#2 CCGATGCCGATACAGAGGCTTTTAGCAATTTGATACATAGGCTCTTATGTGACCACCCAC 487 ********* **************** ** ***** * * ** ** * consensus_9112#0 ACCG-TCATAATTAATAATTTATTATTCGGCCACAAAGAGAAAGGTGTGATTGTTACCTG 1118 consensus_9112#3 ACCG-TCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTG 419 consensus_9112#1 ACCG-TCATAATTAATAATTTATTATTCGGCCATAAAGAGAAAGGTGTGATTGTTACCTG 545 consensus_9112#4 ACCGGTCATAATTAN--ACTA--------------------------------------- 408 consensus_9112#2 ATCT-TCTAANCCCGTTCCATACAATTC-------AAATNAAATTTNTAATT-CTACTTC 538 * * ** * consensus_9112#0 TTAGCGAGTGTTTCTGCATGTTATCG-ATTTTATCGACGAATTGTTTCTGT-TATTAAAA 1176 consensus_9112#3 TTAGCGAGTGTTTCTGCATGTTATCG-ATTTTATCGACGCATTGTTTCTGTCTATTAAAC 478 consensus_9112#1 TTAGCGAGTGTTTCTGCATGTTATCG-ATTTTATCGACGCATTGTTTCTGT-TATTAAAA 603 consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 CCNGCGGCGCCATTGACACACAGGCACGGAACAACAAGGGGCTGTTNCGACATCTCGGGT 598 consensus_9112#0 G--ATTTTAATCGTTGAGCTGGGG-TTGTGC--AATAGCTCG-CTAGATTGTAA--GTAA 1228 consensus_9112#3 AGCATTTTAATCGTTGAGCTGGGG-TTGTGC--AATAGCTCG-CTAGTTTGTAA--GCAA 532 consensus_9112#1 G--ATTTTAATCGTTGAGCTGGGGGTTGTGGCAAATAGCTCGGCTAGTTTGTAAAGGCAA 661 consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 G------CAACCCCC---CTGGAGTTCTCANACACCGGAACNGATGGATCACTA----CA 645 consensus_9112#0 AA-GGTGAGGATAATTTTT---AGTTAAAA---AAAGGCTAGG--CCATATCC-AATGGC 1278 consensus_9112#3 AAAGGTGAGGATAATTTTT---AGTTCAAACANAAAGGCTAGG--CCATATCC-AATGGC 586 consensus_9112#1 AAAGGTGAGGATAATTTTTTCAGGTTTAACAAAAAAGGCTAGGG-CCATATCCCAATGGC 720 consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 CTTGGCCAACTTGGTTTTCAGATCCNGAATTCTCNATACTAAATTCCGAAGCCAGACCCN 705 consensus_9112#0 G-GGTTCGT-TTGCCAA-TTG-TA-TTGATTGCA--TGCA-TAAAC-GTTAATTTCTAG- 1328 consensus_9112#3 AAGGTTCGTATCGCCAAATTG-TACTTGATTGCCATTGCAATAAACCGTTATTTTGTAGC 645 consensus_9112#1 AGGGTTCGGTTCGCCAAATTGGTATTTGATTGC---TGCA--TAACCGTTATTTTGNACA 775 consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ACTNTTAGTATATCCC--TGGCTTCACATTCTCAAAAGCACACGGAAGTTNTGNTG---- 759 consensus_9112#0 ATTTAATCGT--TTGCT-GCGCTAGTGCCATGTTTATGAACAATCAG-TTGTCCTTACAA 1384 consensus_9112#3 ATTTANATGGAGTTGCT-GCGCGAGTGCCATGTTTATGAACACTCANGTTGTCCTTACAA 704 consensus_9112#1 ATTCATGGGA--TTGCTTGCCGCAGTTCCCTCGTTTTGACCCACTCG-TNTCCTTCAC-- 830 consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 AA-CACG-TCATGTTTGCTTG-TGCGAGGCCTTCAAACCTAAGCTAGTATTAAGTTCCAC 1441 consensus_9112#3 AAACACGGTCATGTACGCTTGCTGCGAGGC-TTCAAACCTAAGCTAGTN----------- 752 consensus_9112#1 ------------------------------------------------------------ consensus_9112#4 ------------------------------------------------------------ consensus_9112#2 ------------------------------------------------------------ consensus_9112#0 CGTTGTTAATGTACTTAATAAATTTTCT 1469 consensus_9112#3 ---------------------------- consensus_9112#1 ---------------------------- consensus_9112#4 ---------------------------- consensus_9112#2 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||