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Anopheles gambiae
cluster # 9117 cluster # 9117       Sequences # 14       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9117#0 length = 1264 sequences # 6  
consensus_9117#1 length = 628 sequences # 1  
consensus_9117#2 length = 534 sequences # 3  
consensus_9117#3 length = 523 sequences # 2  
consensus_9117#4 length = 414 sequences # 1  
consensus_9117#5 length = 368 sequences # 1  

consensusID : consensus_9117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1264
fasta sequence
                              [CCCGAGGTTAAACATCGGCTGGCGTGTGATAGTCGGCGCAGGTGTAATATACGGCAGCGTGTATCTGTACGAACGATTGTCCTGGACGAACACGGC-AAGGAGCGCAACTTCAAGAACCAGTACGTAGATCATGCAACGCGCAAGCTGAAGCTGATCGTTGATTTGACCTCGGCCAACTGCAGTCACCAGGTGCAGCAGGAACTGTCCAGCACTTTCGCACGATTGTGCCGGGTGGTGGACACGGCCAGCACGGAGATGAACGAGGAGCTGAAGCAGATCGAAAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGCGAATTAGATAGAATCGTTGACTATCCCCTATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAATTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAGG-AAATTGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGA-TTTTTTTTTCATTTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAA---CGTTGG-AAGCATTGTAAAGCAAGTCCTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAAGGGCAATAATGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTTAACAGCAGCTCCGGCAGGAGTACAGCATATTTAATGTTTGTTTCTATAGTAGGCAATAGGCAAATGAACGAAGCAAGGCGAAACGACGCAACGCTTTTAGTGAGGGGATGCGCTCGCAGGAAGATGGCGCAATGGCTGCGCAACGGGGTGCGTTACAGGTGGTGCGCTAGACGCGAAAGGAGCAGGTAGAGCATCGCTGCTTCACCCGTGCTGTATGATACTATTTAATGTACTGTGAATTAGTAGCAAATATCTATACTCTTCGAACCCGTTGTTTGATATGTAAAAATAACACAACTAAATCGAATCGTTCTCTCCGTGTTCACGTGAATAAATGTAGTTTGCAACGCGGTGGCGGTGCACCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGATACTTTTTACAAAATAAATTGGACAAGCAACGGAAAAAAAA]

[+] EMBL AL932035             [CCCGAGGTTAAACATCGGCTGGCGTGTGATAGTCGGCGCAGGTGTAATATACGGCAGCGTGTATCTGTACGAACGATTGTCCTGGACGAACACGGC AAGGAGCGCAACTTCAAGAACCAGTACGTAGATCATGCAACGCGCAAGCTGAAGCTGATCGTTGATTTGACCTCGGCCAACTGCAGTCACCAGGTGCAGCAGGAACTGTCCAGCACTTTCGCACGATTGTGCCGGGTGGTGGACACGG CAGCACGGAGATGAACGAGGAACTGAAGCAGATCGAGAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGCGAATTAGATAGAATCGTTGACTACCCCCTATTTCTTGAGCTCCTAGCGCCGGTGGATGGGCAACAGTGTAATTGCCCTTTAGATACAAATGTTTCCCG    C TATTGGTTCTATTTTTTAGGGATTCAGGAAAATTGGAGAAAAAAGCTCCCCACAAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX620844             [                          TGATAGTCGGCGCCGGTGTAATATACGGCAGCGTGTATCTGTACGAACGATTGTCCTGGACGAACACGGCAAAGGAGCGCAACTTCAAGAACCAGTACGTAGATCATGCAACGCGCAAGCTGAAGCTGATCGTTGATTTGACCTCGGCCAACTGCAGTCACCAGGTGCAGCAGGAACTGTCCAGCACTTTCGCACGATTGTGCCGGGTGGTGGACACGGCCAGCACGGAGATGAACGAGGAGCTGAAGCAGATCGAAAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGCGAATTAGATAGAATCGTTGACTATCCCCTATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAATTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAGG AAGGGGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGA TTTTTTTTTCATTTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAA   CGTTGG AA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX618918             [                                                                                                                                                           TCGTTGATTTGACCTCGGCCAACTGCAGTCACCAGGTGCAGCAGGAACTGTCCAGCACTTTCGCACGATTGTGCCGGGTGGTGGACACGGCCAGCACGGAGATGAACGAGGAGCTGAAGCAGATCGAAAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGCGAATTAGATAGAATCGTTGACTATCCCCTATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAATTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAGG AAGGGGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGA TTTTTTTTTCATTTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAA   CGTTGG AAGCATTGTAAAGCAAGTCCTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAAGGGCAATAATGGTTCGGCTGTAATCGTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX616756             [                                                                                                                                                                                                                                   GCCGGGTGGTGGACACGGCCAGCACGGAGATGAACGAGGAGCTGAAGCAGATCGAAAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGCGAATTAGATAGAATCGTTGACTATCCCCTATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCCACAGTGTAAGTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM647695             [                                                                                                                                                                                                                                                                                                                                                                                                   ccgGGCGAATTAGATAGAATCGTTGACTACCCCCTATTTCTTGAGCTCCTAGCGCCGGTGGATGGGCAACAGTGTAATTGCCCTTTAGATACAAATGTTT      CCCGTATTGGTTCTATTTTTTAGGGATTCAGG AAATTGGAGAAAAAAGCTCCCCACAAAACAAAACAAAATGAATGTGATTTTTTTTTTCATTTCTTCATCTCGGTTGGGAAAATCGAGCACAGAAACGGCGCCGGCTTGCATTGTAGAGCAAGTCCTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAGGGGCAATAATGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTTAACAGCAGCTCCGGCAGGAGTACAGCATATTTAATGTTTGTTTCTATAGTAGGCAATAGGCAAATGAACGAAGCAAGGCGAAACGACGCAACGCTTTTAGTGAGGGGATGCGCTCGCAGGAAGATGGCGCAATGGCTGCGCAACGGGGTGCGTTACAGGTGGTGCGCTAGACGCGAAAGGAGCAGGTAGAGCATCGCTGCTTCACCCGTGCTGTATGATACTATTTAATGTACTGTGAATTAGTAGCAAATATCTATACTCTTCGAACCCGTTGT                                                                                                                                                                                                                               ]
[-] EMBL AGA284204            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGCAGGTAGAGCATCGCTGCTTCACCCGTGCTGTATGATACTATTTAATGTACTGTGAATTAGTAGCAAATATCTATACTCTTCAAACCCGTTGTTTGATATGTAAAAATAACACAACTAAATCGAATCGTTCTCTCCGTGTTCACGTGAATAAATGTAGTTTGCAACGCGGTGGCGGTGCACCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGATACTTTTTACAAAATAAATTGGACAAGCAACGGAAAAAAAA]


>consensus_9117#0 CCCGAGGTTAAACATCGGCTGGCGTGTGATAGTCGGCGCAGGTGTAATATACGGCAGCGT GTATCTGTACGAACGATTGTCCTGGACGAACACGGCAAGGAGCGCAACTTCAAGAACCAG TACGTAGATCATGCAACGCGCAAGCTGAAGCTGATCGTTGATTTGACCTCGGCCAACTGC AGTCACCAGGTGCAGCAGGAACTGTCCAGCACTTTCGCACGATTGTGCCGGGTGGTGGAC ACGGCCAGCACGGAGATGAACGAGGAGCTGAAGCAGATCGAAAGCTCGCTCGGGGTGATC GAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAG CTGGAAATCTTCGACAGCAACTACATCAAGGCGAATTAGATAGAATCGTTGACTATCCCC TATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAATTGCCGTTTAGATACAA ATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAGGAAATTGGAGAAAAAAG CTCCCCACAAAACAAAACAAAACGAATGTGATTTTTTTTTCATTTTTTCATCTCGGTTGG GAAAATCGAGCACAGAAACGTTGGAAGCATTGTAAAGCAAGTCCTAGTTGTTGAGCAGCT ATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAAGGGCAATAATGGTTCG GCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTTAACAGCAGCTCCGG CAGGAGTACAGCATATTTAATGTTTGTTTCTATAGTAGGCAATAGGCAAATGAACGAAGC AAGGCGAAACGACGCAACGCTTTTAGTGAGGGGATGCGCTCGCAGGAAGATGGCGCAATG GCTGCGCAACGGGGTGCGTTACAGGTGGTGCGCTAGACGCGAAAGGAGCAGGTAGAGCAT CGCTGCTTCACCCGTGCTGTATGATACTATTTAATGTACTGTGAATTAGTAGCAAATATC TATACTCTTCGAACCCGTTGTTTGATATGTAAAAATAACACAACTAAATCGAATCGTTCT CTCCGTGTTCACGTGAATAAATGTAGTTTGCAACGCGGTGGCGGTGCACCGGAAGAGCGG ACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTG ACGCGTGCATAGCATCGATAGGATACTTTTTACAAAATAAATTGGACAAGCAACGGAAAA AAAA



consensusID : consensus_9117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence
                              [NGCCACGAGGTTGTGTTGTGGACACTGGCCAGCACGGAGATGAACGAGGAACTGAAGCAGATCTGAGAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAATGGCGAATTAGATAGAATCGTTGACTACCCCCTATTTCTTGAGCTCCTAGCTGCCGGTGNGATGGGCAACAGTGTAATTGCCCTTTAGATACAAATGTTTCCCGTATTTGGTTCTATTTTCTTAGGGATTCAGGAAATTTGGAGAAAAAAGCTCCCCAAAAACAAAACAAAATGAATGTGATTNTTNCTCTTTCATTTCTTCATACTCGGTTGGGCAAAATCGAGCACAGAAACGGCGCCGCGCTTGCATTGTAGAGCAAGTCCTAGCTATGTTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTATTTTGCGCCATAGAAAGGGGCNATACCTGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTNAACAGCAGCTCCGNGCAGNGAGTACAGCATATANNAATGTCTGNNNCTATAGCTAGCGCAAT]

[+] EMBL AL931688             [NGCCACGAGGTTGTGTTGTGGACACTGGCCAGCACGGAGATGAACGAGGAACTGAAGCAGATCTGAGAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAATGGCGAATTAGATAGAATCGTTGACTACCCCCTATTTCTTGAGCTCCTAGCTGCCGGTGNGATGGGCAACAGTGTAATTGCCCTTTAGATACAAATGTTTCCCGTATTTGGTTCTATTTTCTTAGGGATTCAGGAAATTTGGAGAAAAAAGCTCCCCAAAAACAAAACAAAATGAATGTGATTNTTNCTCTTTCATTTCTTCATACTCGGTTGGGCAAAATCGAGCACAGAAACGGCGCCGCGCTTGCATTGTAGAGCAAGTCCTAGCTATGTTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTATTTTGCGCCATAGAAAGGGGCNATACCTGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTNAACAGCAGCTCCGNGCAGNGAGTACAGCATATANNAATGTCTGNNNCTATAGCTAGCGCAAT]


>consensus_9117#1 NGCCACGAGGTTGTGTTGTGGACACTGGCCAGCACGGAGATGAACGAGGAACTGAAGCAG ATCTGAGAGCTCGCTCGGGGTGATCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAA CAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAATGGCGA ATTAGATAGAATCGTTGACTACCCCCTATTTCTTGAGCTCCTAGCTGCCGGTGNGATGGG CAACAGTGTAATTGCCCTTTAGATACAAATGTTTCCCGTATTTGGTTCTATTTTCTTAGG GATTCAGGAAATTTGGAGAAAAAAGCTCCCCAAAAACAAAACAAAATGAATGTGATTNTT NCTCTTTCATTTCTTCATACTCGGTTGGGCAAAATCGAGCACAGAAACGGCGCCGCGCTT GCATTGTAGAGCAAGTCCTAGCTATGTTTGAGCAGCTATTGTTCCGTAGCACACGTGCGT TCCTTATTTTGCGCCATAGAAAGGGGCNATACCTGGTTCGGCTGTAATCGTACTAACCCA AAGCAATGTCCTCAATATCCTCTGTNAACAGCAGCTCCGNGCAGNGAGTACAGCATATAN NAATGTCTGNNNCTATAGCTAGCGCAAT



consensusID : consensus_9117#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 534
fasta sequence
                              [AAGAATCGCCCCGAGGNGAAACAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGGCGAATTAGATAGAATCGTTGACTATCCCCTATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAATTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAGGAAGGGGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGATTTTTTTTTCATTTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAACGTTGGAAGCATTGTAAAGCAAGTCCTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAAGGGCAATAATGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTTAACAGCACCTCCGGCAGGAGTGCAGCATATTTAATGGTTGTTCTATAGTAG]

[+] EMBL AL931686             [AAGAATCGCCCCGAGGNGAAACAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGGCGAATTAGATAGAATCGTTGACTATCCCCTATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAATTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAGGAAGGGGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGATTTTTTTTTCATTTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAACGTTGGAAGCATTGTAAAGCAAGTCCTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAAGGGCAATAATGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTTAACAGCACCTCCGGCAGGAGTGCAGCATATTTAATGGTTGTTCTATAGTAG]
[+] EMBL BX615589             [                                                                                                                                         TATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAATTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAGGAAGGGGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGATTTTTTTTTCATTTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAACGTTGGAAGCATTGTAAAGCAAGTCCTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAAGGGCAATAATGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATC                                                          ]
[+] EMBL AGA285504            [                                                                                                                                                                                                                      ATTGGTTCTATTTTTTATGGATTCAGGAAGGGGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGA TTTTTTTTCATTTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAACGTTGGAAGCATTGTAAAGCAAGTCCTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAAAGGGCAATAATGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCTGTTAACAGCACCTCCGGCAGGAGTGCAGCATATTTAATGTTTGTTt        ]


>consensus_9117#2 AAGAATCGCCCCGAGGNGAAACAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAA CTACATCATGAACGAGCTGGAAATCTTCGACAGCAACTACATCAAGGGCGAATTAGATAG AATCGTTGACTATCCCCTATTTCTTGAGCTCCTTGCGCCGGTGGATGGGCAACAGTGTAA TTGCCGTTTAGATACAAATGTTTCCCGTACCCGTATTGGTTCTATTTTTTATGGATTCAG GAAGGGGGAGAAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGATTTTTTTTTCAT TTTTTCATCTCGGTTGGGAAAATCGAGCACAGAAACGTTGGAAGCATTGTAAAGCAAGTC CTAGTTGTTGAGCAGCTATTGTTCCGTAGCACACGTGCGTTCCTTTTTGCGCCATAGAAA AGGGCAATAATGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGTCCTCAATATCCTCT GTTAACAGCACCTCCGGCAGGAGTGCAGCATATTTAATGGTTGTTCTATAGTAG



consensusID : consensus_9117#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 523
fasta sequence
                              [GCAAGAATCGGCACGNGGTGCTAGCTAGTAAAGCAGAAAGAAACCAGATACCGCTCTCGGAGAAGACGTTAGCGCAGGGAGCGAACCAAAACATGGATGAATGGAAATACATTTACGGGAGCGCGTAAGCGCGTGCGCGCGCGTTGCACACTTTAAACAACAACAACAACAACAAAAAAACATATTCTACTTTTATTAAGCAAAGAAATAAAAACAAAAACAAAACAAATGAAAGTAAGCAAGTCCCCACCAACCAAGAAACAAAAAACAAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAAAACTCAGAAGTACACTCTAGGCAGAAAGGGAAACATAAAT-AATAAAAAACCAAAAAAACACTCGTTTATGGTCATGCCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGCAATGTCAGAATAAGAGACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGGAGATAACACAAACAGAAAAGAAAAAAAGAACGACA]

[+] EMBL BX468177             [GCAAGAATCGGCACGNGGTGCTAGCTAGTAAAGCAGAAAGAAACCAGATACCGCTCTCGGAGAAGACGTTAGCGCAGGGAGCGAACCAAAACATGGATGAATGGAAATACATTTACGGGAGCGCGTAAGCGCGTGCGCGCGCGTTGCACACTTTAAACAACAACAACAACAACAAAAAAACATATTCTACTTTTATTAAGCAAAGAAATAAAAACAAAAACAAAACAAATGAAAGTAAGCAAGTCCCCACCAACCAAGAAACAAAAAACAAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAAAACTCAGAAGTACACTCTAGGCAGAAAGGGAAACATAAAT AATAAAAAACCAAAAAAACACTCGTTTATGGTCATGCCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGCAATGTCAGAATAAGAGACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGGAGATAACACAAACAGAAAAGAAAAAAAGAACGACA]
[+] EMBL BX617003             [                                                                                                            ACATTTACGGGAGCGCGTAAGCGCGTGCGCGCGCGTTGCACACTTTAAACAACAACAACAACAACAAAAAAACATATTCTACTTTTATTAAGCAAAGAAATAAAAACAAAAACAAAACAAATGAAAGTAAGCAAGTCCCCACCAACCAAGAAACAAAAAACAAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAAAACTCAGAAGTACACTCTAGGCAGAAAGGGAAACATAAATAAATAAAAAACCAAAAAAACACTCGTTTATGGTCATGCCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGCAATGTCAGAATAAGAGACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGGAGATA                              ]


>consensus_9117#3 GCAAGAATCGGCACGNGGTGCTAGCTAGTAAAGCAGAAAGAAACCAGATACCGCTCTCGG AGAAGACGTTAGCGCAGGGAGCGAACCAAAACATGGATGAATGGAAATACATTTACGGGA GCGCGTAAGCGCGTGCGCGCGCGTTGCACACTTTAAACAACAACAACAACAACAAAAAAA CATATTCTACTTTTATTAAGCAAAGAAATAAAAACAAAAACAAAACAAATGAAAGTAAGC AAGTCCCCACCAACCAAGAAACAAAAAACAAAACAAATAAAAAAAAACAAAAACAAAACA AACAAGGAAAACTCAGAAGTACACTCTAGGCAGAAAGGGAAACATAAATAATAAAAAACC AAAAAAACACTCGTTTATGGTCATGCCAATGGTAGCAGTGCGTGATACCGTGATGGGTGA GGTGTAGCAATGTCAGAATAAGAGACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGC GGCACCGGAGATAACACAAACAGAAAAGAAAAAAAGAACGACA



consensusID : consensus_9117#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence
                              [CTTTTATTAAGCAAAGAAATAAAAACAAAAACAAAACAAATGAAAGTAAGCAAGTCCCCACCAACCAAGAAACAAAAAACAAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAAAACTCAGAAGTACACTCTAGGCAGAAAGGGAAACATAAATAAATAAAAAACCAAAAAAACACTCGTTTATGGTCATGCCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGCAATGTCAGAATAAGAGACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGATACTTTTTACAAAATAAATTGGA]

[+] EMBL BX618381             [CTTTTATTAAGCAAAGAAATAAAAACAAAAACAAAACAAATGAAAGTAAGCAAGTCCCCACCAACCAAGAAACAAAAAACAAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAAAACTCAGAAGTACACTCTAGGCAGAAAGGGAAACATAAATAAATAAAAAACCAAAAAAACACTCGTTTATGGTCATGCCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGCAATGTCAGAATAAGAGACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGATACTTTTTACAAAATAAATTGGA]


>consensus_9117#4 CTTTTATTAAGCAAAGAAATAAAAACAAAAACAAAACAAATGAAAGTAAGCAAGTCCCCA CCAACCAAGAAACAAAAAACAAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAA AACTCAGAAGTACACTCTAGGCAGAAAGGGAAACATAAATAAATAAAAAACCAAAAAAAC ACTCGTTTATGGTCATGCCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGC AATGTCAGAATAAGAGACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGG AAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATA GACCGTTGACGCGTGCATAGCATCGATAGGATACTTTTTACAAAATAAATTGGA



consensusID : consensus_9117#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence
                              [CCGCGGACGCGTGGGGCGCAACGGGGTGCGTTACATGTGGTGCGCTAGACGCGAAAGGAGCAGGTAGAGCATCGCTGCTTCACCCGTGCTGTATGATACTATTTAATGTACTGTGAATTAGTAGCAAATATCTATACTCTTCAAACCCGTTGTTTGATATGTAAAAATAACACAACTAAATCGAATCGTTCTCTCCGTGTTCACGTGAATAAATGTAGTTTGCAACGCGGTGGCGGTGCACCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGAAACTTTTTACAAAATAAATTGGACAAGCAACAG]

[+] EMBL BM624395             [CCGCGGACGCGTGGGGCGCAACGGGGTGCGTTACATGTGGTGCGCTAGACGCGAAAGGAGCAGGTAGAGCATCGCTGCTTCACCCGTGCTGTATGATACTATTTAATGTACTGTGAATTAGTAGCAAATATCTATACTCTTCAAACCCGTTGTTTGATATGTAAAAATAACACAACTAAATCGAATCGTTCTCTCCGTGTTCACGTGAATAAATGTAGTTTGCAACGCGGTGGCGGTGCACCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGAAACTTTTTACAAAATAAATTGGACAAGCAACAG]


>consensus_9117#5 CCGCGGACGCGTGGGGCGCAACGGGGTGCGTTACATGTGGTGCGCTAGACGCGAAAGGAG CAGGTAGAGCATCGCTGCTTCACCCGTGCTGTATGATACTATTTAATGTACTGTGAATTA GTAGCAAATATCTATACTCTTCAAACCCGTTGTTTGATATGTAAAAATAACACAACTAAA TCGAATCGTTCTCTCCGTGTTCACGTGAATAAATGTAGTTTGCAACGCGGTGGCGGTGCA CCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATA AATAGACCGTTGACGCGTGCATAGCATCGATAGGAAACTTTTTACAAAATAAATTGGACA AGCAACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      CCCGAGGTTAAACATCGGCTGGCGTGTGATAGTCGGCGCAGGTGTAATATACGGCAGCGT 60
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      GTATCTGTACGAACGATTGTCCTGGACGAACACGGCAAGGAGCGCAACTTCAAGAACCAG 120
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      TACGTAGATCATGCAACGCGCAAGCTGAAGCTGATCGTTGATTTGACCTCGGCCAACTGC 180
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      -------------------------------------NGCCACGAGGTTGTGTTGTGGAC 23
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      AGTCACCAGGTGCAGCAGGAACTGTCCAGCACTTTCGCACGATTGTGCCGGGTGGTGGAC 240
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ACTGGCCAGCACGGAGATGAACGAGGAACTGAAGCAGATCTGAGAGCTCGCTCGGGGTGA 83
consensus_9117#2      -----------------------------------------AAGAATCGCCCCGAGGNG- 18
consensus_9117#0      AC-GGCCAGCACGGAGATGAACGAGGAGCTGAAGCAGATC-GAAAGCTCGCTCGGGGTGA 298
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ---------------------------GCAAGAATCGGCACGNGGTGCTAGCTAGTAAAG 33
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      TCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACG 143
consensus_9117#2      ----AAACAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACG 74
consensus_9117#0      TCGAAACCAACCAGAAACAGATCAAGCTGCTGAAAAACAAGGCGAACTACATCATGAACG 358
consensus_9117#5      ---------------------------------------------------CCGCGGACG 9
consensus_9117#3      CAGAAAGAAACCAGATACCGCTCTCGGAGAAGACGTTAGCGCAGGGAGCGAACCAAAACA 93
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      AGCTGGAAATCTTCGACAGCAACTACATCAATGGCGAATTAGATAGAATCGTTGACTACC 203
consensus_9117#2      AGCTGGAAATCTTCGACAGCAACTACATCAAGGGCGAATTAGATAGAATCGTTGACTATC 134
consensus_9117#0      AGCTGGAAATCTTCGACAGCAACTACATCAA-GGCGAATTAGATAGAATCGTTGACTATC 417
consensus_9117#5      CG-TGGGGCGCAACGGGGTGCGTTACAT--GTGGTGCGCTAGACGCGAAAGGAGCAGGTA 66
consensus_9117#3      TGGATGAATGGAAATACATTTACGGGAGC-GCGTAAGCGCGTGCGCGCGCGTTGCACACT 152
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      CCCTATTTCTTGAGCTCCTAGCTGCCGGTGNGATGGGCAACAGTGTAATTGCCCTTTAGA 263
consensus_9117#2      CCCTATTTCTTGAGCTCCTTGC-GCCGGTGG-ATGGGCAACAGTGTAATTGCCGTTTAGA 192
consensus_9117#0      CCCTATTTCTTGAGCTCCTTGC-GCCGGTGG-ATGGGCAACAGTGTAATTGCCGTTTAGA 475
consensus_9117#5      GAGCATCGCT---GCTTCACCCGTGCTGTATGATACTATTTAATGTA-CTGTGAATTAGT 122
consensus_9117#3      TTAAACAACAACAACAACAACAAAAAAACATATTCTACTTTTATTAAGCAAAGAAATAAA 212
consensus_9117#4      -------------------------------------CTTTTATTAAGCAAAGAAATAAA 23
                                                                 *  *         **  

consensus_9117#1      TACAAATGTTTCCCGTAT-----TTGGTTCTATTTTCTTAGGGATTCAGGAAATTTGGAG 318
consensus_9117#2      TACAAATGTTTCCCGTACCCGTATTGGTTCTATTTT-TTATGGATTCAGGAAGGG-GGAG 250
consensus_9117#0      TACAAATGTTTCCCGTACCCGTATTGGTTCTATTTT-TTATGGATTCAGGAAATT-GGAG 533
consensus_9117#5      AGCAAATATCTATACTCTTCAAACCCGTTGTTTGAT-ATGTAAAAATAACACAACTAAAT 181
consensus_9117#3      AACAAAAACAAAACAAATGAAAGTAAGC---AAGTCCCCACCAACCAAGAAACAAAAAAC 269
consensus_9117#4      AACAAAAACAAAACAAATGAAAGTAAGC---AAGTCCCCACCAACCAAGAAACAAAAAAC 80
                        ****                    *                *   *  *       * 

consensus_9117#1      AAAAAAGCTCCCCA-AAAACAAAACAAAATGAATGTGATTNTTNCTCTTTCATTTCTTCA 377
consensus_9117#2      AAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGATTTTTT---TTTCATTTTTTCA 307
consensus_9117#0      AAAAAAGCTCCCCACAAAACAAAACAAAACGAATGTGATTTTTT---TTTCATTTTTTCA 590
consensus_9117#5      CGAATCGTTCTCTCCGTGTTCACGTGAA-TAAATGTAGTTTGCAACGCGGTGGCGGTGCA 240
consensus_9117#3      AAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAAAACT---CAGAAGTACACTC 326
consensus_9117#4      AAAACAAATAAAAAAAAACAAAAACAAAACAAACAAGGAAAACT---CAGAAGTACACTC 137
                        **    *            *    **   **                           

consensus_9117#1      TACTCGGTTGGGCAAAATCGAGCAC---AGAAAC-GGCGCCGCGCTTGC--ATTGTAGAG 431
consensus_9117#2      T-CTCGGTTGGG-AAAATCGAGCAC---AGAAAC-GTTGGAA-----GC--ATTGTAAAG 354
consensus_9117#0      T-CTCGGTTGGG-AAAATCGAGCAC---AGAAAC-GTTGGAA-----GC--ATTGTAAAG 637
consensus_9117#5      C---CGGAAGAGCGGA--CGAGCGA---AGCTACCAACGCGGC----AC--GTGATCACA 286
consensus_9117#3      TAGGCAGAAAGGGAAACATAAATAA-TAAAAAACCAAAAAAACACTCGTTTATGGTCATG 385
consensus_9117#4      TAGGCAGAAAGGGAAACATAAATAAATAAAAAACCAAAAAAACACTCGTTTATGGTCATG 197
                          * *    *   *    *       *   **                  *  *    

consensus_9117#1      CAAGTCCTAGCTATGTTTGAGCAGCTATTGT-TCCGTAGCACACGTGCGTTCCTTATTTT 490
consensus_9117#2      CAAGTCCTAGTTGT---TGAGCAGCTATTGT-TCCGTAGCACACGTGCGTTCCTT--TTT 408
consensus_9117#0      CAAGTCCTAGTTGT---TGAGCAGCTATTGT-TCCGTAGCACACGTGCGTTCCTT--TTT 691
consensus_9117#5      CGTTTGCT-GCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGAAACTT--TTT 343
consensus_9117#3      CCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGCAATGTCAGAATAA-GAG 444
consensus_9117#4      CCAATGGTAGCAGTGCGTGATACCGTGATGGGTGAGGTGTAGCAATGTCAGAATAA-GAG 256
                      *   *  * *   *   *       *   *  *     * *    *       *      

consensus_9117#1      GCGCCATAGAAAGGGGCNATACC-TGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGT 549
consensus_9117#2      GCGCCATAGAAAAGGGCAATAA--TGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGT 466
consensus_9117#0      GCGCCATAGAAAAGGGCAATAA--TGGTTCGGCTGTAATCGTACTAACCCAAAGCAATGT 749
consensus_9117#5      ACAAAATAAATTGGACAAGCAAC-AG---------------------------------- 368
consensus_9117#3      ACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGGA-GATAACACAAACAG 503
consensus_9117#4      ACGTAATGTAACGTGGTGTTACCGTGGTCTAGCTGCGGCACCGGAAGAGCGGACGAGCGA 316
                       *   **  *          *    *                                  

consensus_9117#1      CCTCAATATCCTCTGTNAACAGCAGCTCCGNGCAGNGAGTACAGCATATANNAATGTCTG 609
consensus_9117#2      CCTCAATATCCTCTGTTAACAGCACCTCCGGC--AGGAGTGCAGCATAT-TTAATGGTTG 523
consensus_9117#0      CCTCAATATCCTCTGTTAACAGCAGCTCCGGC--AGGAGTACAGCATAT-TTAATGTTTG 806
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      AAA-AGAAAAAAAGAACGACA--------------------------------------- 523
consensus_9117#4      AGCTACCAACGCGGCACGTGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGC 376
                                                                                  

consensus_9117#1      NNNCTATAGCTAGCGCAAT----------------------------------------- 628
consensus_9117#2      TTC-TATAG-TAG----------------------------------------------- 534
consensus_9117#0      TTTCTATAGTAGGCAATAGGCAAATGAACGAAGCAAGGCGAAACGACGCAACGCTTTTAG 866
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ATAGCATCGATAGGATACTTTTTACAAAATAAATTGGA---------------------- 414
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      TGAGGGGATGCGCTCGCAGGAAGATGGCGCAATGGCTGCGCAACGGGGTGCGTTACAGGT 926
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      GGTGCGCTAGACGCGAAAGGAGCAGGTAGAGCATCGCTGCTTCACCCGTGCTGTATGATA 986
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      CTATTTAATGTACTGTGAATTAGTAGCAAATATCTATACTCTTCGAACCCGTTGTTTGAT 1046
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      ATGTAAAAATAACACAACTAAATCGAATCGTTCTCTCCGTGTTCACGTGAATAAATGTAG 1106
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      TTTGCAACGCGGTGGCGGTGCACCGGAAGAGCGGACGAGCGAAGCTACCAACGCGGCACG 1166
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      ------------------------------------------------------------
consensus_9117#2      ------------------------------------------------------------
consensus_9117#0      TGATCACACGTTTGCTGCTATAAATAGACCGTTGACGCGTGCATAGCATCGATAGGATAC 1226
consensus_9117#5      ------------------------------------------------------------
consensus_9117#3      ------------------------------------------------------------
consensus_9117#4      ------------------------------------------------------------
                                                                                  

consensus_9117#1      --------------------------------------
consensus_9117#2      --------------------------------------
consensus_9117#0      TTTTTACAAAATAAATTGGACAAGCAACGGAAAAAAAA 1264
consensus_9117#5      --------------------------------------
consensus_9117#3      --------------------------------------
consensus_9117#4      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)