cluster # 914

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 914 cluster # 914 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_914#0 length = 610 sequences # 1

consensus_914#1 length = 337 sequences # 1

consensusID : consensus_914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAAAATAATTG]

[+] EMBL BM596339             [CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAAAATAATTG]




>consensus_914#0
CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATC
CGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACG
ATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGT
GACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTT
CTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGA
ATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTT
TTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACT
TGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTT
TTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTC
GTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGG
AAAATAATTG

consensusID : consensus_914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTTGTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTTTTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG]

[+] EMBL AGA281865            [GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTTGTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTTTTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG]




>consensus_914#1
GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTT
GTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTT
TTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATG
GAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGC
GAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGT
GAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_914#0      -------------------------------------------------------CCGCT 5
consensus_914#1      GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTT 60
                                                                              * *

consensus_914#0      CCGCACGAAAACGTGGTT--TCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGT 63
consensus_914#1      GTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTG-TAGTATCCCT 119
                       *****       *       ***  **   *    *  *  ** *** **  **** *

consensus_914#0      GCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATA 123
consensus_914#1      TTTCGA-ACTGACACCCAGTGCCCGCAGC-GTGAAGCAACGTGCTCTCGGATTTG-GACA 176
                       **   *    *  ****  *    *** * *  ***    * * *  ***    ** *

consensus_914#0      AGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTT-GTGA 182
consensus_914#1      AATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGA 236
                     *  *  *  *      *  *** *   *        ** ** *  *   *  *   ****

consensus_914#0      CGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCT 242
consensus_914#1      CGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCT 296
                     ************************************************************

consensus_914#0      TTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAAT 302
consensus_914#1      TTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG------------------- 337
                     *****************************************                   

consensus_914#0      TTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTT 362
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      TGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTG 422
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      GGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTT 482
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      ACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGT 542
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      CACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAA 602
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      AATAATTG 610
consensus_914#1      --------