cluster # 9173

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Anopheles gambiae
cluster # 9173 cluster # 9173 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9173#0 length = 723 sequences # 7

consensus_9173#1 length = 416 sequences # 6
consensus_9173#2 length = 262 sequences # 1

consensusID : consensus_9173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 723
fasta sequence

                              [TCATGTTGTCACTTCATGACCACCTACTTTATATGAAT-CCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG-ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCT]

[+] EMBL BX619910             [TCATGTTGTCACTTCATGACCACCTACTTTATATGAATCCCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTAGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATNACGCTGGGTAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTNCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGGAACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGna                                                                                                                                                                                                                    ]
[+] EMBL BM613947             [    ccgGTCACTTCATGACCACCTACTTTATATGAATCCCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAA                                                                                                                                                                                                                   ]
[+] EMBL CNS08FKY             [                           TTTATATGAAT CCCCTATTCAAAAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCT]
[+] EMBL BM576688             [                                    cc gCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAG                                                                          ]
[+] EMBL BM651393             [                                                                               ccgAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTT                                           ]
[+] EMBL BM582519             [                                                                                                                                                                                                                                            GTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAGATTGGGTCACTTTGAAAACGGACCAGTGATCGAATGTAACACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGGCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAA                                                                                                                                                                   ]
[+] EMBL AF348121             [                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTT ATT  GTTA                                                     ]




>consensus_9173#0
TCATGTTGTCACTTCATGACCACCTACTTTATATGAATCCCCTATTCAAGAAATTGGCCT
TAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTT
CTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAG
CATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGG
AGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAG
TGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACT
TCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAA
CCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGGACCTTTTCCTACGCA
CTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTT
GGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATAC
GTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTT
CATTACGTTAGTCGATCTTTACTGCTCGTAAAAAAAAAAAAAAAGGCCACATGTGCTCGA
GCT

consensusID : consensus_9173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 416
fasta sequence

                              [GCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG-ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTGCGAATGTCAACCGGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCCCCCCTTTT]

[-] EMBL CNS090GQ             [GCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTGTGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGA                                                                                                                                                                                                  ]
[-] EMBL BM644222             [                                                    CAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCcgg                                                                             ]
[-] EMBL BM637668             [                                                    CAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCcgg                                                                                                    ]
[-] EMBL BM641271             [                                                             AGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTGCGAATGTCAACCGG                                        ]
[+] EMBL CNS08J2I             [                                                                                    ATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTGTGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTCCGAATTTC  CCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCCCCCCTTTT]
[-] EMBL BM618132             [                                                                                         CAGCAAGCTGTTCGGCTTCACTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATGGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCGAACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCT                                                                                                                            ]




>consensus_9173#1
GCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATTT
TAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTC
GATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGAT
TCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCA
ATTCCGACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTG
GCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAG
TGCGAATGTCAACCGGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCCCCCCTTTT

consensusID : consensus_9173#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCTGAACAATTTGCTGTTGAAGCGCACCTCCACTTACCTGGTCGGAATTGCGGGAGCTGTATTTTTCTTCGAGCGCGGCTTCGATATGATAACAGATACCATTTTCGAATCCCATAACAAAGGGAAATTATGGAAAGACATTAAGCACAAATACGAGCAGTAAAGATCGACTAACGTAATGAAGCCGAACAGCTTGCTGTTTATTGACTAATAAACCTTAGCTCACTAAAATTCTG]

[+] EMBL BM607033             [CCGCGGACGCGTGGGCGGACGCGTGGGCTGAACAATTTGCTGTTGAAGCGCACCTCCACTTACCTGGTCGGAATTGCGGGAGCTGTATTTTTCTTCGAGCGCGGCTTCGATATGATAACAGATACCATTTTCGAATCCCATAACAAAGGGAAATTATGGAAAGACATTAAGCACAAATACGAGCAGTAAAGATCGACTAACGTAATGAAGCCGAACAGCTTGCTGTTTATTGACTAATAAACCTTAGCTCACTAAAATTCTG]




>consensus_9173#2
CCGCGGACGCGTGGGCGGACGCGTGGGCTGAACAATTTGCTGTTGAAGCGCACCTCCACT
TACCTGGTCGGAATTGCGGGAGCTGTATTTTTCTTCGAGCGCGGCTTCGATATGATAACA
GATACCATTTTCGAATCCCATAACAAAGGGAAATTATGGAAAGACATTAAGCACAAATAC
GAGCAGTAAAGATCGACTAACGTAATGAAGCCGAACAGCTTGCTGTTTATTGACTAATAA
ACCTTAGCTCACTAAAATTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9173#0      TCATGTTGTCACTTCATGACCACCTACTTTATATGAATCCCCTATTCAAGAAATTGGCCT 60
consensus_9173#1      ------------------------------------------------------------
consensus_9173#2      ------------------------------------------------------------
                                                                                  

consensus_9173#0      TAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTT 120
consensus_9173#1      ------------------------------------------------------------
consensus_9173#2      ------------------------------------------------------------
                                                                                  

consensus_9173#0      CTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAG 180
consensus_9173#1      ------------------------------------------------------------
consensus_9173#2      ------------------------------------------------------------
                                                                                  

consensus_9173#0      CATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGG 240
consensus_9173#1      ----------------------GCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTT 38
consensus_9173#2      ------------------------------------------------------------
                                                                                  

consensus_9173#0      AGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTG-AAAACGGACCA 299
consensus_9173#1      TTTTTTTTTTTTTTCAGAATTTTAGTG-AGCTAAGGTTTATTAGTCAA-TAAACAGCAAG 96
consensus_9173#2      ---------------------CCGCGGACGCGTGGGCGGACGCGTGGGCTGAACAATTTG 39
                                                   **             *      ***      

consensus_9173#0      GTGATCGAATGTAGCACTA-ATGAATGGGCTCTGAAGCG-GCATCTGTACAAAGGAAATG 357
consensus_9173#1      CTGTTCGGCTTCATTAC-G-TTAGTCGATCTTTACTGCTCGTATTTGTGCTTA--ATGTC 152
consensus_9173#2      CTGTTGAAGCGCACCTCCACTTACCTGGTCGGAATTGCG-GGAGCTGTATT-------TT 91
                       ** *       *   *    *    *  *      **  * *  ***          * 

consensus_9173#0      ACTTCACGGCGTTCATT-ACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGA 416
consensus_9173#1      TTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCC 212
consensus_9173#2      TCTTCG-AGCGCGGCTTCGATATGATAACAGATACCATTTTCGAATCCCATAACAAAGG- 149
                        * *          **     **  *   *              *           *  

consensus_9173#0      CTAACCGAGGTGCGATGTGATTTT-ATACCGTCAACCGGAAAGAAGGTGGACCTTTTC-- 473
consensus_9173#1      GCGCTCGAAGAAAAATACAGCTCCCGCAATTCCGACCAGGTAAGTGGAGGTGCGCTTCAA 272
consensus_9173#2      GAAATTATGGAAAGACATTA-------AGCACAAATACGAGCAGTAAAGATCGACTAACG 202
                               *    *            *      *   *         *      *    

consensus_9173#0      CTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCG 533
consensus_9173#1      CAGCAAATTGTTCAGCAGCTTCAT-TTTGGCTCGA-----------CTATTCCTTGGAAA 320
consensus_9173#2      TAATGAA--GCCGAACAGCTTGCTGTTTA--TTGACTAATAAACCTTAGCTCACTAAAAT 258
                            *  *   *  **  *  * ***   *  *               **        

consensus_9173#0      TATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAA 593
consensus_9173#1      TTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTGCGAATGTCAACCGGTAGG 380
consensus_9173#2      TCTG-------------------------------------------------------- 262
                      * *                                                         

consensus_9173#0      GAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGT 653
consensus_9173#1      CCAACAGTTCTCGAGGAATTCCGCAGCCCCCCTTTT------------------------ 416
consensus_9173#2      ------------------------------------------------------------
                                                                                  

consensus_9173#0      TCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTAAAAAAAAAAAAAAAGGCCACATG 713
consensus_9173#1      ------------------------------------------------------------
consensus_9173#2      ------------------------------------------------------------
                                                                                  

consensus_9173#0      TGCTCGAGCT 723
consensus_9173#1      ----------
consensus_9173#2      ----------