These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 723 fasta sequence [TCATGTTGTCACTTCATGACCACCTACTTTATATGAAT-CCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG-ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCT] [+] EMBL BX619910 [TCATGTTGTCACTTCATGACCACCTACTTTATATGAATCCCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTAGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATNACGCTGGGTAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTNCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGGAACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGna ] [+] EMBL BM613947 [ ccgGTCACTTCATGACCACCTACTTTATATGAATCCCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAA ] [+] EMBL CNS08FKY [ TTTATATGAAT CCCCTATTCAAAAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCT] [+] EMBL BM576688 [ cc gCCCTATTCAAGAAATTGGCCTTAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAG ] [+] EMBL BM651393 [ ccgAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTTCTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAGCATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTGAAAACGGACCAGTGATCGAATGTAGCACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTT ] [+] EMBL BM582519 [ GTTGGAGCTAAATGCTAGCAAAAAATACGTTACAGCTAGATTGGGTCACTTTGAAAACGGACCAGTGATCGAATGTAACACTAATGAATGGGCTCTGAAGCGGCATCTGTACAAAGGAAATGACTTCACGGCGTTCATTACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGACTAACCGAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGGCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAA ] [+] EMBL AF348121 [ GAGGTGCGATGTGATTTTATACCGTCAACCGGAAAGAAGGTGG ACCTTTTCCTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCGTATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAAGAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTT ATT GTTA ] consensusID : consensus_9173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 416 fasta sequence [GCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG-ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTGCGAATGTCAACCGGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCCCCCCTTTT] [-] EMBL CNS090GQ [GCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTGTGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGA ] [-] EMBL BM644222 [ CAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCcgg ] [-] EMBL BM637668 [ CAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCcgg ] [-] EMBL BM641271 [ AGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTGCGAATGTCAACCGG ] [+] EMBL CNS08J2I [ ATAAACAGCAAGCTGTTCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTGTGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCG ACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCTTCATTTTGGCTCGACTATTCCTTGGAAATTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTCCGAATTTC CCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCCCCCCTTTT] [-] EMBL BM618132 [ CAGCAAGCTGTTCGGCTTCACTACGTTAGTCGATCTTTACTGCTCGTATTTGTGCTTAATGTCTTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATGGAAGCCGCGCTCGAAGAAAAATACAGCTCCCGCAATTCCGAACCAGGTAAGTGGAGGTGCGCTTCAACAGCAAATTGTTCAGCAGCT ] consensusID : consensus_9173#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTGAACAATTTGCTGTTGAAGCGCACCTCCACTTACCTGGTCGGAATTGCGGGAGCTGTATTTTTCTTCGAGCGCGGCTTCGATATGATAACAGATACCATTTTCGAATCCCATAACAAAGGGAAATTATGGAAAGACATTAAGCACAAATACGAGCAGTAAAGATCGACTAACGTAATGAAGCCGAACAGCTTGCTGTTTATTGACTAATAAACCTTAGCTCACTAAAATTCTG] [+] EMBL BM607033 [CCGCGGACGCGTGGGCGGACGCGTGGGCTGAACAATTTGCTGTTGAAGCGCACCTCCACTTACCTGGTCGGAATTGCGGGAGCTGTATTTTTCTTCGAGCGCGGCTTCGATATGATAACAGATACCATTTTCGAATCCCATAACAAAGGGAAATTATGGAAAGACATTAAGCACAAATACGAGCAGTAAAGATCGACTAACGTAATGAAGCCGAACAGCTTGCTGTTTATTGACTAATAAACCTTAGCTCACTAAAATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9173#0 TCATGTTGTCACTTCATGACCACCTACTTTATATGAATCCCCTATTCAAGAAATTGGCCT 60 consensus_9173#1 ------------------------------------------------------------ consensus_9173#2 ------------------------------------------------------------ consensus_9173#0 TAACTATGGCGGGTAGTGCAAAACAAATCTTTTCTAAAATTCAACAAACTAATAATGTTT 120 consensus_9173#1 ------------------------------------------------------------ consensus_9173#2 ------------------------------------------------------------ consensus_9173#0 CTAAGGGTACCTTGTACGTAGTTAATAGGAACCCCAGAAATCTCGAACGATTAAGACTAG 180 consensus_9173#1 ------------------------------------------------------------ consensus_9173#2 ------------------------------------------------------------ consensus_9173#0 CATACAAAGTGGACGGATATCATCTAGAAAGACCCGTTCGAAACTTCTGGCATAGGTTGG 240 consensus_9173#1 ----------------------GCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTT 38 consensus_9173#2 ------------------------------------------------------------ consensus_9173#0 AGCTAAATGCTAGCAAAAAATACGTTACAGCTAAATTGGTTCACTTTG-AAAACGGACCA 299 consensus_9173#1 TTTTTTTTTTTTTTCAGAATTTTAGTG-AGCTAAGGTTTATTAGTCAA-TAAACAGCAAG 96 consensus_9173#2 ---------------------CCGCGGACGCGTGGGCGGACGCGTGGGCTGAACAATTTG 39 ** * *** consensus_9173#0 GTGATCGAATGTAGCACTA-ATGAATGGGCTCTGAAGCG-GCATCTGTACAAAGGAAATG 357 consensus_9173#1 CTGTTCGGCTTCATTAC-G-TTAGTCGATCTTTACTGCTCGTATTTGTGCTTA--ATGTC 152 consensus_9173#2 CTGTTGAAGCGCACCTCCACTTACCTGGTCGGAATTGCG-GGAGCTGTATT-------TT 91 ** * * * * * * ** * * *** * consensus_9173#0 ACTTCACGGCGTTCATT-ACGCTGGGAAAAGTATTCGCCTCGCGTTGCTTGGATGCTGGA 416 consensus_9173#1 TTTCCATAATTTCCCTTTGTTATGGGATTCGAAAATGGTATCTGTTATCATATCGAAGCC 212 consensus_9173#2 TCTTCG-AGCGCGGCTTCGATATGATAACAGATACCATTTTCGAATCCCATAACAAAGG- 149 * * ** ** * * * * consensus_9173#0 CTAACCGAGGTGCGATGTGATTTT-ATACCGTCAACCGGAAAGAAGGTGGACCTTTTC-- 473 consensus_9173#1 GCGCTCGAAGAAAAATACAGCTCCCGCAATTCCGACCAGGTAAGTGGAGGTGCGCTTCAA 272 consensus_9173#2 GAAATTATGGAAAGACATTA-------AGCACAAATACGAGCAGTAAAGATCGACTAACG 202 * * * * * * * consensus_9173#0 CTACGCACTGTCGAAGAGAGTGGTATTTGTCTCAAGGAACCGAATAGAATTCGCCCGGCG 533 consensus_9173#1 CAGCAAATTGTTCAGCAGCTTCAT-TTTGGCTCGA-----------CTATTCCTTGGAAA 320 consensus_9173#2 TAATGAA--GCCGAACAGCTTGCTGTTTA--TTGACTAATAAACCTTAGCTCACTAAAAT 258 * * * ** * * *** * * ** consensus_9173#0 TATTCTTGGGATATGCACCGACCCGAAAAGCCGTGGGAAGTGATGGAGTAAATACAAAAA 593 consensus_9173#1 TTTTCTTTGCACTTGCAATCACAACACAAGCTGATAGAAGTGCGAATGTCAACCGGTAGG 380 consensus_9173#2 TCTG-------------------------------------------------------- 262 * * consensus_9173#0 GAAATACGTATTCAGAATTTTAGTGAGCTAAGGTTTATTAGTCAATAAACAGCAAGCTGT 653 consensus_9173#1 CCAACAGTTCTCGAGGAATTCCGCAGCCCCCCTTTT------------------------ 416 consensus_9173#2 ------------------------------------------------------------ consensus_9173#0 TCGGCTTCATTACGTTAGTCGATCTTTACTGCTCGTAAAAAAAAAAAAAAAGGCCACATG 713 consensus_9173#1 ------------------------------------------------------------ consensus_9173#2 ------------------------------------------------------------ consensus_9173#0 TGCTCGAGCT 723 consensus_9173#1 ---------- consensus_9173#2 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||