These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2997 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAGACTCAATCCAACGGTAACATGTCTACAGCGGAGAAAATTGAAGAGCCCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAGACGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGCTGGTGGAGCGTCTGCAGGAAGCCGACGTGGAGCTGTACCGCCCGTCGCTGGAAGCGATGGCAAACTTGATCCGGGCGTCCACCACCTCCATGACGTCCGTGCCGAAGCCGCTCAAGTTTATGCGTCCGCACTACGAAGCGATGAAGGAGATCCATAAGAAGATGACGGCCAAGCTGAAGGACGTCAACACGCTGAAGCTGTGCGCGGAAATCATCTCTGTGCTGGCGATGACGATGGGCACCGGCAAGGAGTGCCTGGTGTACCGGTTGTTGAGCGACAACAGCACCGAGAGCCTCGGTGAGTGGGGTCACGAGTATGTGCGACACCTGTCCGGCGAGATAGCCGCCAACTGGCCGGAATCGACGGACAATCTGTTCAAAAACCGCCTCATCGAGCTGATCCATCAGATCATCCCGTACAACATGGCGCATAACGCGGAGGCGGAAGCGTGCGATCTGTTGATGGAGATCGAACGGCTCGACCTGCTGGAGAACTACGTGGACGAGAGTGCGTACCCGCGGGTCTGTCTGTATCTGCAGAGCTGCGTGCCGTACGTGGCCGAGCCGGAGAACGTGAGCCTGCTCAAGTGTGCGCTGAATCTGTCGCGCAAGTTCAACCAGCACACGCAGGCGATGCGGCTGGCCATGATGATCAACGATACGGAGCTGATCAAGGAAATCTTTATGTCGTGCGGCGACAGTGCGGTACAGAAGCAGCTGGCGTTCATGCTCGGCCGGCAGCAGATTTTCCTCGAGCTGCCGGAGGGAATGAACGACTACGACGATCTGGTCGAGATCATGTCCAATTCCCATCTAAACCACCATTTCCTCAATCTGGCCCGCGAGCTGGACATTATGGAGCCCAAGACGCCCGAAGACGTGTACAAGTCGCACTTGGACAACTCGCGCGCCCCGTTCGGTTCGCAGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGTGAACGGGTTCGTGAATGCCGGCTTCGGGCAGGACAAGCTACTGATGGAGGACGGCAACAAGTGGCTGTACAAAAACAAGGAGCACGGTATGCTGAGTGCGACCGCTTCGCTCGGACTGATACTGCTGTGGGATGTGGACGGTGGTCTGACCCCGATTGACAAGTATTTGTACTCGAACGAGGATTACATCAAGTCGGGCGCACTGCTGGCCTGCGGTATCGTAAACTGTGGCGTACGCAATGAGGTCGATCCGGCGCTGGCCCTGCTGTCGGGAC-ACGTGCTGCATCAGAACACAACGATGCGCATCGGCGCCATCCTTGGGCTGGGTTTGGCGTACGC-TGG-TCGAACCGGTCGGTGGTGCTGGAGCTGATTGGCTCGGTGTTCAGCTCGGAGCGTCGCACGGGCTCAAACATGGAGGTGATGGGCATTGCGGCCCTCTCGCTCGGTATGATTGCCGTCGGCTCGTGCAACAGCGAGGTGACGGAAGTGCTACTGCAGATCATTATGGATCGCAGCGAGGCCGATCTGAAGGATACCTACGCTCGCTTCCTGCCGCTTGGTCTTGGACTGGTGTACCTTGGCCGGCAGGAGGCGGTCGAAGCGGTTACGGCTGCGCTCGAGATAGTGGCCGAACCGTTCCGCTCGATGGCCACCACCATGGTGGAAATCTGCGCATACGCCGGCACGGGCAATGTGCTGAAAATCCAGCAACTACTCCATCTCTGCTCGGAGCATTACGAACCGTCGGCTTCGTCGAGCGAGGAACCGGCGTCCAAGAAGTCCGAATCGAAGGACACCAACAACAAGGAAAAGGAGGACAAGGAAAAGGATCTCTCTGGATGCCAGGCGGTGGCCGTGCTCGGTATTGCGCTGATTGCGATGGGCGAGGAGATCGGTGCCGAAATGGCATTCCGCTCGTTCGGAAATCTGCTGCGCTACTGTGAGCCGTGCATA-CGCCGAGCGGTCCCGCTAGCTC-TTGGGTTGA-TTTCCGTCTCGAACCCGAAGCTGAACATACTGGACACGCTGAGCAAATTTTCGCACGACAGCGACGCCGAGGTAGCGCACAATGCCATCTTTGCGATGGGTTTGGTCGGAGCGGGAACGAACAACGCGCGTTTGGCGTCGATGCTGCGCCAGCTGGCGCAGTATCACGCCAAGGACCCGAACAACCTGTTCATGGTGCGCATCGCCCAGGGTTTGACCCATCTGGGCAAGGGTACGTTCACGATCAGCCCGTACCACAGCGATCGGCAGCTGATGAGCCCGGTTGCTGTTGCCGGCCTGATGGCGGCACTTGTCTCGTTCCTGGACGTGAAGAACATTATTCTTGGCAAATCGCACTACTTGCTGTACACCCTAACGACCGCCATGCAACCGCGCATGCTAATTACATTCACCGAAGACTTGAACTCATGCCCCGTCCCAGTCCGTGTCGGAATGGCCGTAGACGTCGTCGGACAGGCGGGTAAGCCCAAAACCATTACCGGCTTCCAGACACACACCACTCCGGTACTTCTGGCCATGGGCGAACGTGCCGAACTGGCGA-CCGAGGAGTACATCTCCTTGACACCGATCATGGAAGGGTTCTGCATTTTGCGAAAAAATCCCAACTATGTCCCGTAAAGAGCAGCGACGACTAGCAACCGCCGTGTTTCCCTCCCAGCTGTTTTGCGAAACCCTTCAACCTCCCGCTTGTCATCATTGAAGTGTGGTAACCGTATCCTGTCACGCAATCAGGGGAAGGAATAGCACGCATTCAGTTACAAACGGCCCGCGCTGGTCGATTTATTACTG-TACACAAAAAAAGAAACATTTACTTATACACTTAGGATCGTAATAAATAAAGATTTTCGAAACAGTAAAAAAA] [+] EMBL BM619557 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGACTCAATCCAACGGTAACATGTCTACAGCGGAGAAAATTGAAGAGCCCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAGACGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGCTGGTGGAGCGTCTGCAGGAAGCCGACGTGGAGCTGTACCGCCCGTCGCTGGAAGCGATGGCAAACTTGATCCGGGCGTCCACCACCTCCATGACGTCCGTGCCGAAGCCGCTCAAGTTTATGCGTCCGCACTACGAAGCGATGAAGGAGATCCATAAGAAGATGACGGCCAAGCTGAAGGACGTCAACACGCTGAAGCTGTGCGCGGAAATCATCTCTGTGCTGGCGATGACGATGGGCACCGGCAAGGAGTGCCTGGTGTACCGGTTGTTGAGCGACAACAGCACCGAGAGCCTCGGTGAGTGGGGTCACGAGTATGTGCGACACCTGTCCGGCGAGATAGCCGCCAACTGGCCGGAATCGACGGACAATCTGTTCAAAAACCGCCTCATCGAGCTGATCCATCAGATCATCCCGTACAACATGGCGCATAACGCGGAGGCGGAAGCGTG ] [+] EMBL BM655542 [ ccgCACCTGTCCGGCGAGATAGCCGCCAACTGGCCGGAATCGACGGACAATCTGTTCAAAAACCGGCTCATCGAGCTGATCCATCAGATCATCCCGTACAACATGGCGCATAACGCGGAGGCGGAAGCGTGCGATCTGTTGATGGAGATCGAACGGCTCGACCTGCTGGAGAACTACGTGGACGAGAGTGCGTACCCGCGGGTCTGTCTGTATCTGCAGAGCTGCGTGCCGTACGTGGCCGAGCCGGAGAACGTGAGCCTGCTCAAGTGTGCGCTGAATCTGTCGCGCAAGTTCAACCAGCACACGCAGGCGATGCGGCTGGCCATGATGATCAACGATACGGAGCTGATCAAGGAAATCTTTATGTCGTGCGGCGACAGTGCGGTACAGAAGCAGCTGGCGTTCATGCTCGGCCGGCAGCAGATTTTCCTCGAGCTGCCGGAGGGAATGAACGACTACGACGATCTGGTCGAGATCATGTCCAATTCCCATCTAAACCACCATTTCCTCAATCTGGCCCGCGAGCTGGACATTATGGAGCCCAAGACGCCCGAAGACGTGTACAAGTCGCACTTGGACAACTCGCGCGCCCCGTTCGGTTCGCAGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGTGAACGGGTTCGTGAATGCCGGCTTCGGGCAGGACAAGC ] [+] EMBL BM613878 [ ccgGCAAGTTCAACCAGCACACGCAGGCGATGCGGCTGGCCATGATGATCAACGATACGGAGCTGATCAAGGAAATCTTTATGTCGTGCGGCGACAGTGCGGTACAGAAGCAGCTGGCGTTCATGCTTGGCCGGCAGCAGATTTTCCTCGAGCTGCCGGAGGGAATGAACGACTACGACGATCTGGTCGAGATCATGTCCAATTCCCATCTGAACCACCATTTCCTCAATCTGGCCCGCGAGCTGGACATTATGGAGCCCAAGACGCCCGAAGACGTGTACAAGTCGCACTTGGACAACTCGCGCGCCCCGTTCGGTTCGCAGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGTGAACGGGTTCGTGAATGCCGGCTTCGGGCAGGACAAGCTACTGATGGAGGACGGCAACAAGTGGCTGTACAAAAACAAGGAGCACGGTATGCTGAGTGCGACCGCTTCGCTCGGACTGATACTGCTGTGGGATGTGGACGGTGGTCTGACCCCGATTGACAAGTATTTGTACTCGAACGAGGATTACATCAAGTCGGGCGCACTGCTGGCCTGCGGTATCGTAAACTGTGGCGTACGCAATGAGGTCGATCCGGCGCTGGCCCTGCTGTCGGGAC ] [+] EMBL BM656637 [ ccGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGTGAACGGGTTCGTGAATGCCGGCTTCGGGCAGGACAAGCTACTGATGGAGGACGGCAACAAGTGGCTGTACAAAAACAAGGAGCACGGTATGCTGAGTGCGACCGCTTCGCTCGGACTGATACTGCTGTGGGATGTGGACGGTGGTCTGACCCCGATTGACAAGTATTTGTACTCGAACGAGGATTACATCAAGTCGGGCGCACTGCTGGCCTGCGGTATCGTAAACTGTGGCGTACGCAATGAGGTCGATCCGGCGCTGGCCCTGCTGTC GGACTACGTGCTGCATCAGAACACAACGATGCGCATCGGCGCCATCCTTGGGCTGGGTTTGGCGTACGC TGGCTCGAACCGGTCGGTGGTGCTGGAGCTGATTGGCTCGGTGTTCAGCTCGGAGCGTCGCACGGGCTCAAACATGGAGGTGATGGGCATTGCGGCCCTCTCGCTCGGTATGATTGCCGTCGGCTCGTGCAACAGCGAGGTGACGGAAGTGCTACTGCAGATCATTATGGATCGCAGCGAGGCCGATCTGAAGGATACCTACGCTCGCTTCCTGCCGCTTGGTCTTGGACTGGTGTACCTTG ] [+] EMBL BM608732 [ ccGCGGACGCGTGG GCGAACCGGTCGGTGGTGCTGGAGCTGATTGGCTCGGTGTTCAGCTCGGAGCGTCGCACGGGCTCAAACATGGAGGTGATGGGCATTGCGGCCCTCTCGCTCGGTATGATTGCCGTCGGCTCGTGCAACAGCGAGGTGACGGAAGTGCTACTGCAGATCATTATGGATCGCAGCGAGGCCGATCTGAAGGATACCTACGCTCGCTTCCTGCCGCTTGGTCTTGGACTGGTGTACCTTGGCCGGCAGGAGGCGGTCGAAGCGGTTACGGCTGCGCTCGAGATAGTGGCCGAACCGTTCCGCTCGATGGCCACCACCATGGTGGAAATCTGCGCATACGCCGGCACGGGCAATGTGCTGAAAATCCAGCAACTACTCCATCTCTGCTCGGAGCATTACGAACCGTCGGCTTCGTCGAGCGAGGAACCGGCGTCCAAGAAGTCCGAATCGAAGGACACCAACAACAAGGAAAAGGAGGACAAGGAAAAGGATCTCTCTGGATGCCAGGCGGTGGCCGTGCTCGGTATTGCGCTGATTGCGATGGGCGAGGAGATCGGTGCCGAAATGGCATTCCGCTCGTTCGGCAATCTGCTGCGCTACTGTGAGCCGTGCATA CGCCGAGCGGTCCCGCTAGCTC TTGGGTTGATTTTCCGTCTCGAACCCGAAGCTGAACATACTGGACACG ] [+] EMBL BM598527 [ ccgGGAGGTGCTCCTGCAGATCATTATGGATCGCAGCGAGGCCGATCTGAAGGACACCTACGCTCGCTTCCTGCCGCTCGGTCTTGGACTGGTGTACCTTGGCCGGCAGGAGGCGGTCGAAGCGGTTACGGCTGCGCTCGAGATAGTGGCCGAACCGTTCCGCTCGATGGCCACCACCATGGTGGAAATCTGCGCATACGCCGGCACGGGCAATGTGCTGAAAATCCAGCAACTACTCCATCTCTGCTCGGAGCATTACGAACCGTCGGCTTCGTCGAGCGAGGAACCGGCGTCCAAGAAGTCCGAATCGAAGGACACCAACAACAAGGAAAAGGAGGACAAGGAAAAGGATCTCTCTGGATGCCAGGCGGTGGCCGTGCTCGGTATTGCGCTGATTGCGATGGGCGAGGAGATCGGTGCCGAAATGGCATTCCGCTCGTTCGGAAATCTGCTGCGCTACTGTGAGCCGTGCATACCGCCGAGCGGTCCCGCTAGCTCTTTGGGTTGA TTTCCGTCTCGAACCCGAAGCTGAACATACTGGACACGCTGAGCAAAT ] [+] EMBL BX617734 [ GGCGGTGGCCGTGCTCGGTATTGCGCTGATTGCGATGGGCGAGGAGATCGGTGCCGAAATGGCATTCCGCTCGTTCGGAAATCTGCTGCGCTACTGTGAGCCGTGCATA CGCCGAGCGGTCCCGCTAGCTC TTGGGTTGA TTTCCGTCTCGAACCCGAAGCTGAACATACTGGACACGCTGAGCAAATTTTCGCACGACAGCGACGCCGAGGTAGCGCACAATGCCATCTTTGCGATGGGTTTGGTCGGAGCGGGAACGAACAACGCGCGTTTGGCGTCGATGCTGCGCCAGCTGGCGCAGTATCACGCCAAGGACCCGAACAACCTGTTCATGGTGCGCATCGCCCAGGGTTTGACCCATCTGGGCAAGGGTACGTTCACGATCAGCCCGTACCACAGCGATCGGCAGCTGATGAGCCCGGTTGCTGTTGCCGGCCTGATGGCGGCACTTGTCTCGTTCCTGGACGTGAAGAACATTATTCTTGGCAAATCGCACTACTTGCTGTACACCCTAACGACCGCCATGCAACCGCGCATGCTAATTACATTCACCGAAGACTTGAACTCATGCCCCGTCCCAGTCCGTGTCGGAATGGCCGTAGACGTCGTCGGACAGGCGGGTAAGCCCAAAACCATTACCGGCTTCCAGACACACACCACTCCGGTACTTCTGGCCATGGGCGAACGTGCCGAACTGGCGACCCGA GAGTACATCTCCTTGACA ] [+] EMBL BX608451 [ TGCGCTGATTGCGATGGGCGAGGAGATCGGTGCCGAAATGGCATTCCGCTCGTTCGGAAATCTGCTGCGCTACTGTGAGCCGTGCATA CGCCGAGCGGTCCCGCTAGCTC TTGGGTTGA TTTCCGTCTCGAACCCGAAGCTGAACATACTGGACACGCTGAGCAAATTTTCGCACGACAGCGACGCCGAGGTAGCGCACAATGCCATCTTTGCGATGGGTTTGGTCGGAGCGGGAACGAACAACGCGCGTTTGGCGTCGATGCTGCGCCAGCTGGCGCAGTATCACGCCAAGGACCCGAACAACCTGTTCATGGTGCGCATCGCCCAGGGTTTGACCCATCTGGGCAAGGGTACGTTCACGATCAGCCCGTACCACAGCGATCGGCAGCTGATGAGCCCGGTTGCTGTTGCCGGCCTGATGGCGGCACTTGTCTCGTTCCTGGACGTGAAGAACATTATTCTTGGCAAATCGCACTACTTGCTGTACACCCTAACGACCGCCATGCAACCGCGCATGCTAATTACATTCACCGAAGACTTGAACTCATGCCCCGTCCCAGTCCGTGTCGGAATGGCCGTAGACGTCGTCGGACAGGCGGGTAAGCCCAAAACCATTACCGGCTTCCAGACACACACCACTCCGGTACTTCTGGCCATGGGCGAACGTGCCGAACTGGCGA CCGAGGAGTACATCTCCTTGACACCGATCAT ] [+] EMBL AGA284402 [ CGGTTGCTGTTGCCGGCCTGATGGCGGCACTTGTCTCGTTCCTGGACGTGAAGAATATTATTCTTGGCAAATCGCACTACTTGCTGTACACCCTAACGACCGCCATGCAACCGCGCATGCTAATTACATTCACCGAAGACTTGAACTCATGTCCCGTCCCAGTCCGTGTCGGAATGGCCGTAGACGTTGTCGGACAGGCGGGTAAGCCTAAAACCATTACCGGCTTCCAGACACACACCACCCCGGTGCTGCTGGCCATGGGCGAACGTGCCGAACTGGCGA CCGAGGAGTACATC ] [-] EMBL CNS0991H [ CAACCGGGCATGGTAATTACATTCACGGAAGACTTGAACTCTTGTCCCGTCCCAGTCCGTGTCGGAATGGCCGTAGACGTCGTCGGACAGGCGGGTAAGCCCAAAACCATTACCGGCTTCCAGACACACACCACTCCGGTACTTCTGGCCATGGGCGAACGTGCCGAACTGGCGA CCGAGGAGTACATCTCCTTGACACCGATCATGGAAGGGTTCTGCATTTTGCGAAAAAATCCCAACTATGTCCCGTAAAGAGCAGCGACGACTAGCAACCGCCGTGTTTCCCTCCCAGCTGTTTTGCGAAACCCTTCAACCTCCCGCTTGTCATCATTGAAGTGTGGTAACCGTATCCTGTCACGCAATCAGGGGAAGGAATAGCACGCATTCAGTTACAAACGGCCCGCGCTGGTCGATTTATTACTG TACACAAAAAAAGAAACATTTACTTATACACTTAGGATCGTAATAAATAAAGATTTTCG ] [-] EMBL AGA285708 [ gCTGGCCATGGGCGAACGTGCCGAACTGGCGA CCGAGGAGTACATCTCCTTGACACCGATCATGGAAGGGTTCTGCATTTTGCGAAAAAATCCCAACTATGTCCCGTAAAGAGCAGCGACGACTAGCAACCGCCGTGTTTCCCTCCCAGCTGTTTTGCGAAACCCTTCAACCTCCCGCTTGTCATCATTGAAGTGTGGTAACCGTATCCTGTCACGCAATCAGGGGAAGGAATAGCAAGCATTCAGTTACAAACGGCCCGCGCGTGTCGATTTATTACTGCTACACAAAAAAAGAAACATTTACTTATACACTTAGGATCGTAATAAATAAAGATTTTCGAAACAGTAAAAAAA] consensusID : consensus_9290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 936 fasta sequence [ATCCAACGGTAACATGTCTACAGCGGAGAAAATTGAAGAGCGCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAGCCGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGGCGCATAACGCGGAGGCGGAAGCGTGCGATCTGTTGATGGAGATCGAACGGCTGGACCTGCTGGAGAACTACGTGGACGAGAGTGCGTATCCGCGGGTCTGTCTGTATCTGCAGAGCTGCGTGCCGTACGTGGCCGAGCCGGAGAACGTGAGCCTGCTCAAGTGTGCGCTGAATCTGTCGCGCAAGTTCAACCAGCACACGCAGGCGATGCGGCTGGCCATGATGATCAACGATACGGAGCTGATCAAGGAAATCTTTATGTCGTGCGGCGACAGTGCGGTACAGAAGCAGCTGGCGTTCATGCTTGGCCGGCAGCAGATTTTCCTCGAGCTGCCGGAGGGAATGAACGACTACGACGATCTGGTCGAGATCATGTCCAATTCCCATCTGAACCACCATTTCCTCAATCTGGCCCGCGAGCTGGACATTATGGAGCCCAAGACGCCCGAAGACGTGTACAAGTCGCACTTGGACAACTCGCGCGCCCCGTTCGGTTCGCAGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGTGAACGGGTTCGTGAATGCCGGCTTCGGGCAGGACAAGCTACTGATGGAGGACGGCAACAAGTGGCTGTACAAAAACAAGGAGCACAATGCCATCTTTGCGATGGGTTTGGTCGGAGCGGGAACGAACAACGCGCGTTTGGCGTCGATGCTGCGCCACCTGGCCAGTAATCACGCCAAGGACCCGAACAACCTGTTCATGGTGCGCATCGCCCAGGGTTTGACCCATCTGGGCAAGGGTACGTTCACGATCAGCCCGTACCACAGCGA] [+] EMBL CNS0991G [ATCCAACGGTAACATGTCTACAGCGGAGAAAATTGAAGAGCGCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAGCCGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGGCGCATAACGCGGAGGCGGAAGCGTGCGATCTGTTGATGGAGATCGAACGGCTGGACCTGCTGGAGAACTACGTGGACGAGAGTGCGTATCCGCGGGTCTGTCTGTATCTGCAGAGCTGCGTGCCGTACGTGGCCGAGCCGGAGAACGTGAGCCTGCTCAAGTGTGCGCTGAATCTGTCGCGCAAGTTCAACCAGCACACGCAGGCGATGCGGCTGGCCATGATGATCAACGATACGGAGCTGATCAAGGAAATCTTTATGTCGTGCGGCGACAGTGCGGTACAGAAGCAGCTGGCGTTCATGCTTGGCCGGCAGCAGATTTTCCTCGAGCTGCCGGAGGGAATGAACGACTACGACGATCTGGTCGAGATCATGTCCAATTCCCATCTGAACCACCATTTCCTCAATCTGGCCCGCGAGCTGGACATTATGGAGCCCAAGACGCCCGAAGACGTGTACAAGTCGCACTTGGACAACTCGCGCGCCCCGTTCGGTTCGCAGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGTGAACGGGTTCGTGAATGCCGGCTTCGGGCAGGACAAGCTACTGATGGAGGACGGCAACAAGTGGCTGTACAAAAACAAGGAGCACAATGCCATCTTTGCGATGGGTTTGGTCGGAGCGGGAACGAACAACGCGCGTTTGGCGTCGATGCTGCGCCACCTGGCCAGTAATCACGCCAAGGACCCGAACAACCTGTTCATGGTGCGCATCGCCCAGGGTTTGACCCATCTGGGCAAGGGTACGTTCACGATCAGCCCGTACCACAGCGA] consensusID : consensus_9290#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [CCGGGGAAGCAGCACCGACCGACACACAATTGTTCAGTGTAATTTTCAGCAAACAACAAGAGACTCAATCCAACGGTAACATGTCTACAGCGGAGAAAATTGAAGAGCCCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAGACGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGCTGGTGGAGCGTCTGCAGGAAGCCGACGTGGAGCTGTACCGCCCGTCGCTGGAAGCGATGGCAAACTTGATCCGGGCGTCCACCACCTCCATGACGTCCGTGCCGAAGCCGCTCAAGTTTATGCGTCCGCACTACGAAGCGATGAAGGAGATCCATAAGAAGATGACGGCCAAGCTGAAGGACGTCAACACGCTGAAGCTGTGCGCGGAAATCATCTCTGTGCTGGCGATGACGATGGGCAC] [+] EMBL BM603612 [CCGGGGAAGCAGCACCGACCGACACACAATTGTTCAGTGTAATTTTCAGCAAACAACAAGAGACTCAATCCAACGGTAACATGTCTACAGCGGAGAAAATTGAAGAGCCCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAGACGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGCTGGTGGAGCGTCTGCAGGAAGCCGACGTGGAGCTGTACCGCCCGTCGCTGGAAGCGATGGCAAACTTGATCCGGGCGTCCACCACCTCCATGACGTCCGTGCCGAAGCCGCTCAAGTTTATGCGTCCGCACTACGAAGCGATGAAGGAGATCCATAAGAAGATGACGGCCAAGCTGAAGGACGTCAACACGCTGAAGCTGTGCGCGGAAATCATCTCTGTGCTGGCGATGACGATGGGCAC] [+] EMBL BM637597 [ AAGAGCCCGTGGTGAAAAGCAAGGGCAAGGACAAGGAAGACGAAAAGACTGAGCTGTCGGACGAAGATAAGCACCTGCAGGATGAGCTGAACGTGCTGGTGGAGCGTCTGCAGGAACCCGACGTGGAGCTGTACCGCCCGTCGCTGGAAGCGATGGTGAACTTGATCCGGG ] consensusID : consensus_9290#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GCCCAGGGGTGGACCCAGCGGGGCAAGGGTACGTGCACGACCAGCCCGTACCACAGCGATCGGCAGCTGAAGAGCCCGGGTGCTGTGGCCGGCCTGATGGCGGCACTGGTCTCGTGCCTGGACGTGAAGAATATGATACTGGGCAATCGCACTACTCGCTGTACACCCTAACGACCGCCATGCAACCGCGCAGGCTAATGA] [+] EMBL BX612308 [GCCCAGGGGTGGACCCAGCGGGGCAAGGGTACGTGCACGACCAGCCCGTACCACAGCGATCGGCAGCTGAAGAGCCCGGGTGCTGTGGCCGGCCTGATGGCGGCACTGGTCTCGTGCCTGGACGTGAAGAATATGATACTGGGCAATCGCACTACTCGCTGTACACCCTAACGACCGCCATGCAACCGCGCAGGCTAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9290#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAGACTCAATCCAACGGTAACATGTCTACAGCG 60 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GAGAAAATTGAAGAGCCCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAGACGAAAAGACT 120 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGCTGGTGGAGCGTCTG 180 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CAGGAAGCCGACGTGGAGCTGTACCGCCCGTCGCTGGAAGCGATGGCAAACTTGATCCGG 240 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GCGTCCACCACCTCCATGACGTCCGTGCCGAAGCCGCTCAAGTTTATGCGTCCGCACTAC 300 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GAAGCGATGAAGGAGATCCATAAGAAGATGACGGCCAAGCTGAAGGACGTCAACACGCTG 360 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AAGCTGTGCGCGGAAATCATCTCTGTGCTGGCGATGACGATGGGCACCGGCAAGGAGTGC 420 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CTGGTGTACCGGTTGTTGAGCGACAACAGCACCGAGAGCCTCGGTGAGTGGGGTCACGAG 480 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TATGTGCGACACCTGTCCGGCGAGATAGCCGCCAACTGGCCGGAATCGACGGACAATCTG 540 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TTCAAAAACCGCCTCATCGAGCTGATCCATCAGATCATCCCGTACAACATGGCGCATAAC 600 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GCGGAGGCGGAAGCGTGCGATCTGTTGATGGAGATCGAACGGCTCGACCTGCTGGAGAAC 660 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TACGTGGACGAGAGTGCGTACCCGCGGGTCTGTCTGTATCTGCAGAGCTGCGTGCCGTAC 720 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GTGGCCGAGCCGGAGAACGTGAGCCTGCTCAAGTGTGCGCTGAATCTGTCGCGCAAGTTC 780 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AACCAGCACACGCAGGCGATGCGGCTGGCCATGATGATCAACGATACGGAGCTGATCAAG 840 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GAAATCTTTATGTCGTGCGGCGACAGTGCGGTACAGAAGCAGCTGGCGTTCATGCTCGGC 900 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CGGCAGCAGATTTTCCTCGAGCTGCCGGAGGGAATGAACGACTACGACGATCTGGTCGAG 960 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 ATCATGTCCAATTCCCATCTAAACCACCATTTCCTCAATCTGGCCCGCGAGCTGGACATT 1020 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 ATGGAGCCCAAGACGCCCGAAGACGTGTACAAGTCGCACTTGGACAACTCGCGCGCCCCG 1080 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TTCGGTTCGCAGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGTGAACGGGTTC 1140 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GTGAATGCCGGCTTCGGGCAGGACAAGCTACTGATGGAGGACGGCAACAAGTGGCTGTAC 1200 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AAAAACAAGGAGCACGGTATGCTGAGTGCGACCGCTTCGCTCGGACTGATACTGCTGTGG 1260 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GATGTGGACGGTGGTCTGACCCCGATTGACAAGTATTTGTACTCGAACGAGGATTACATC 1320 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AAGTCGGGCGCACTGCTGGCCTGCGGTATCGTAAACTGTGGCGTACGCAATGAGGTCGAT 1380 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CCGGCGCTGGCCCTGCTGTCGGGACACGTGCTGCATCAGAACACAACGATGCGCATCGGC 1440 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GCCATCCTTGGGCTGGGTTTGGCGTACGCTGGTCGAACCGGTCGGTGGTGCTGGAGCTGA 1500 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TTGGCTCGGTGTTCAGCTCGGAGCGTCGCACGGGCTCAAACATGGAGGTGATGGGCATTG 1560 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CGGCCCTCTCGCTCGGTATGATTGCCGTCGGCTCGTGCAACAGCGAGGTGACGGAAGTGC 1620 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TACTGCAGATCATTATGGATCGCAGCGAGGCCGATCTGAAGGATACCTACGCTCGCTTCC 1680 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TGCCGCTTGGTCTTGGACTGGTGTACCTTGGCCGGCAGGAGGCGGTCGAAGCGGTTACGG 1740 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CTGCGCTCGAGATAGTGGCCGAACCGTTCCGCTCGATGGCCACCACCATGGTGGAAATCT 1800 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GCGCATACGCCGGCACGGGCAATGTGCTGAAAATCCAGCAACTACTCCATCTCTGCTCGG 1860 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AGCATTACGAACCGTCGGCTTCGTCGAGCGAGGAACCGGCGTCCAAGAAGTCCGAATCGA 1920 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AGGACACCAACAACAAGGAAAAGGAGGACAAGGAAAAGGATCTCTCTGGATGCCAGGCGG 1980 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TGGCCGTGCTCGGTATTGCGCTGATTGCGATGGGCGAGGAGATCGGTGCCGAAATGGCAT 2040 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 TCCGCTCGTTCGGAAATCTGCTGCGCTACTGTGAGCCGTGCATACGCCGAGCGGTCCCGC 2100 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ------------------------------------------------------------ consensus_9290#2 ---------------------------------------CCGGGGAAGCAGCACCGACCG 21 consensus_9290#0 TAGCTCTTGGGTTGATTTCCGTCTCGAACCCGAAGCTGAACATACTGGACACGCTGAGCA 2160 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 ----------------------------------------------ATCCAACGGTAACA 14 consensus_9290#2 ACACACAATTGTTCAGTGTAATTTTCAGCAAACAACAAGAGACTCAATCCAACGGTAACA 81 consensus_9290#0 AATTTTCGCACGACAGCGACGCCGAGGTAGCGCACAATGCCATCTTTGCGATGGGTTTGG 2220 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 TGTCTACAGCGGAGAAAATTGAAGAGCGCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAG 74 consensus_9290#2 TGTCTACAGCGGAGAAAATTGAAGAGCCCGTGGTGAAAAGCAAGGGCAAGGAGAAGGAAG 141 consensus_9290#0 TCGGAGCGGGAACGAACAACGCGCGTTTGGCGTCGATGCTGCGCCAGCTGGCGCAGTATC 2280 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 CCGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGGCGC 134 consensus_9290#2 ACGAAAAGACTGAGCTGTCGGACGAAGATAAGCAGCTGCAGGATGAGCTGAACATGCTGG 201 consensus_9290#0 ACGCCAAGGACCCGAACAACCTGTTCATGGTGCGCATCGCCCAGGGTTTGACCCATCTGG 2340 consensus_9290#3 --------------------------------------GCCCAGGGGTGGACCCAGCGGG 22 consensus_9290#1 ATAACGCGGAGGCGGAAGCGTGCGATCTGTTGATGGAGATCGAACGGCTGGACCTGCTGG 194 consensus_9290#2 TGGAGCGTCTGCAGGAAGC---CGACGTGGAGCTGTACCGCCCGTCGCTGGAAGCGATGG 258 * * ** consensus_9290#0 GCAAGGGTACGTTCACGATCAGCCCGTA-CCACAG--CGATCGGCAGCTGATGAGCCCGG 2397 consensus_9290#3 GCAAGGGTACGTGCACGACCAGCCCGTA-CCACAG--CGATCGGCAGCTGAAGAGCCCGG 79 consensus_9290#1 AGAAC--TACGTGGACGAG-AGTGCGTATCCGCGGGTCTGTCTGTATCTGCAGAGCT-GC 250 consensus_9290#2 CAAACTTGATCCGGGCGTCCACCACCT--CCATGA---CGTCCGTGCCGAAGCCGCTCAA 313 ** * ** * * * ** ** * * ** consensus_9290#0 TTGCTGTTGCCGGCCTGATGGCGGCAC--TTGTCTCGTTCCTGGACGTGAAGAACATTAT 2455 consensus_9290#3 GTGCTGTGGCCGGCCTGATGGCGGCAC--TGGTCTCGTGCCTGGACGTGAAGAATATGAT 137 consensus_9290#1 GTGCCGTACGTGGCCGAGCCGGAGAACG-TGAGCCTGCTCAAGTGTGCGCTGAATCTGTC 309 consensus_9290#2 GTT---TATGCGTCCGCACTACGAAGCGATGAAGGAGATCCATAAGAAGATGACGGCCAA 370 * * * ** * * * * * ** consensus_9290#0 TCTTGGCAAATCGCACTACTTGCTGTACACCCTAACGACCGCCATG--CAACCGCGCAT- 2512 consensus_9290#3 ACTGGGCAA-TCGCACTACTCGCTGTACACCCTAACGACCGCCATG--CAACCGCGCAG- 193 consensus_9290#1 GCGCAAGTTCAACCAGCACACGCAGGCGATGCGGCTGGCCATGATGATCAACGATACGGA 369 consensus_9290#2 GCTGAAGGA-CGTCA--ACACGCTGAAGCTGTGCGCGGAAATCATCTCTGTGCTGGCGAT 427 * ** ** ** * * ** * consensus_9290#0 GCTAATTACATTCACCGAAGACTTGAACTCATGCCCCGTCCCAGTCCGTGTCGGAATGGC 2572 consensus_9290#3 GCTAATGA---------------------------------------------------- 201 consensus_9290#1 GCTGATCAAGGAAATCTTTATGTCGTGCGGCGACAGTGCGGTACAGAAGCAGCTGGCGTT 429 consensus_9290#2 GACGATGGGCAC------------------------------------------------ 439 * ** consensus_9290#0 CGTAGACGTCGTCGGACAGGCGGGTAAGCCCAAAACCATTACCGGCTTCCAGACACACAC 2632 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 CATGCTTGGCCGGCAGCAGATTTTCCTCGAGCTGCCGGAGGGAATGAACGACTACGACGA 489 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CACTCCGGTACTTCTGGCCATGGGCGAACGTGCCGAACTGGCGACCGAGGAGTACATCTC 2692 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 TCTGGTCGAGATCATGTCCAATTCCCATCTGAACCACCATTTCCTCAATCTGGCCCGCGA 549 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 CTTGACACCGATCATGGAAGGGTTCTGCATTTTGCGAAAAAATCCCAACTATGTCCCGTA 2752 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 GCTGGACATTATGGAGCCCAAGACGCCCGAAGACGTGTACAAGTCGCACTTGGACAACTC 609 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AAGAGCAGCGACGACTAGCAACCGCCGTGTTTCCCTCCCAGCTGTTTTGCGAAACCCTTC 2812 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 GCGCGCCCCGTTCGGTTCGCAGATCGATTCGGCCCGCCAGAACCTGGCCGCCAGCTTCGT 669 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AACCTCCCGCTTGTCATCATTGAAGTGTGGTAACCGTATCCTGTCACGCAATCAGGGGAA 2872 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 GAACGGGTTCGTGAATGCCGGCTTCGGGCAGGACAAGCTACTGATGGAGGACGGCAACAA 729 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 GGAATAGCACGCATTCAGTTACAAACGGCCCGCGCTGGTCGATTTATTACTGTACACAAA 2932 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 GTGGCTGTACAAAAACAAGGAGCACAATGCCATCTTTGCGATGGGTTTGGTCGGAGCGGG 789 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AAAAGAAACATTTACTTATACACTTAGGATCGTAATAAATAAAGATTTTCGAAACAGTAA 2992 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 AACGAACAACGCGCGTTTGGCGTCGATGCTGCGCCACCTGGCCAGTAATCACGCCAAGGA 849 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 AAAAA------------------------------------------------------- 2997 consensus_9290#3 ------------------------------------------------------------ consensus_9290#1 CCCGAACAACCTGTTCATGGTGCGCATCGCCCAGGGTTTGACCCATCTGGGCAAGGGTAC 909 consensus_9290#2 ------------------------------------------------------------ consensus_9290#0 --------------------------- consensus_9290#3 --------------------------- consensus_9290#1 GTTCACGATCAGCCCGTACCACAGCGA 936 consensus_9290#2 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||