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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1176 fasta sequence
[CAATATGCTCAAGCAGAATCCGAGGTTATCAGCTGAGTACTCCGAGAAGCTTCAGCACGGTACTCATCTGGACCAGCATTTTCACGCTGGCTTTTCGCTGCTTTACTCACTGTGGTTCTGGTGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACCGGCTCACGGCGGCGGTGGCGACTGTTACAGCTGGTCTATACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGTGGGCATGGTACTGACCGTGCTTGGGNGCTCGCTTTCATACGCCCTACCGCTGGCTCAGGTTGCGTTCGATTATTCGCCGCCAAAAGCAGCNGCCCGTGNGTGCCCCTTGAACTGACAAACTACTCGACTTACCAACCGGTGACAAACCCGTGCCTGTTGGCTNATTCGTACCGCGACCTTGCTACATACAAAGCAACGCAGCGTATCATAAGTGGNNCCACGAANCAATCACTANCCGATGGGGTCNGGTGACACGGGGTTCCAGGCTTAATCCGTTGGGTTTATATTCCAATTTTCATTCCCCAGGGAATTCCAAACCAAGGCCANGNTAGGGTGGGGTTGAACGACACGAAACACANGCNCCTTGGTTAAAGTTCCCCCTGGACGAGNGACAGCAAAGAGGGGNGTAATGGNTNACAGAGAAAAAATCCCCCNTCTATACAACAAGGGAGGGGACTCCTNTGCCTTNGAGGGGNTNGGGCCGAAGCNACAANGCCGGAAAACTGGTNGCCAANCTTCGGCGCTGACAAACAGAATGCNTACGGGGNCATTCGTTAACCNNGCGACACCACACAACCCCACCCNNCGCCNCNCCACAATGGGCCAGCCCCACACCNACTGAANCNTGCTNCGCCGTNACAACGCGNCCTGGCCTATCTNCANATCCNCCCACAGCATCATCGCACNCNTGGTCCACCCNATCACAAACCACTCTCGGGACCCCAGGGCNCGCNACGGCATGGAACCACCNTTAACCGGCTACCCCACNTAGCGGNGCCCNCANGNGNAGCCAACANAACCAAANAATCTCACNACGACAGCCNCAATGCCCGTCNATACNACCCNAAGCATTCTGCAGTNAACCACACTNNANCAAGNANGAAGAGCAGGCTGCCGTCGCGTCANATTCCCATNTNGNCNCGANCTCCATCAA]
[+] EMBL AL696487 [CAATATGCTCAAGCAGAATCCGAGGTTATCAGCTGAGTACTCCGAGAAGCTTCAGCACGGTACTCATCTGGACCAGCATTTTCACGCTGGCTTTTCGCTGCTTTACTCACTGTGGTTCTGGTGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACCGGCTCACGGCGGCGGTGGCGACTGTTACAGCTGGTCTATACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGTGGGCATGGTACTGACCGTGCTTGGGNGCTCGCTTTCATACGCCCTACCGCTGGCTCAGGTTGCGTTCGATTATTCGCCGCCAAAAGCAGCNGCCCGTGNGTGCCCCTTGAACTGACAAACTACTCGACTTACCAACCGGTGACAAACCCGTGCCTGTTGGCTNATTCGTACCGCGACCTTGCTACATACAAAGCAACGCAGCGTATCATAAGTGGNNCCACGAANCAATCACTANCCGATGGGGTCNGGTGACACGGGGTTCCAGGCTTAATCCGTTGGGTTTATATTCCAATTTTCATTCCCCAGGGAATTCCAAACCAAGGCCANGNTAGGGTGGGGTTGAACGACACGAAACACANGCNCCTTGGTTAAAGTTCCCCCTGGACGAGNGACAGCAAAGAGGGGNGTAATGGNTNACAGAGAAAAAATCCCCCNTCTATACAACAAGGGAGGGGACTCCTNTGCCTTNGAGGGGNTNGGGCCGAAGCNACAANGCCGGAAAACTGGTNGCCAANCTTCGGCGCTGACAAACAGAATGCNTACGGGGNCATTCGTTAACCNNGCGACACCACACAACCCCACCCNNCGCCNCNCCACAATGGGCCAGCCCCACACCNACTGAANCNTGCTNCGCCGTNACAACGCGNCCTGGCCTATCTNCANATCCNCCCACAGCATCATCGCACNCNTGGTCCACCCNATCACAAACCACTCTCGGGACCCCAGGGCNCGCNACGGCATGGAACCACCNTTAACCGGCTACCCCACNTAGCGGNGCCCNCANGNGNAGCCAACANAACCAAANAATCTCACNACGACAGCCNCAATGCCCGTCNATACNACCCNAAGCATTCTGCAGTNAACCACACTNNANCAAGNANGAAGAGCAGGCTGCCGTCGCGTCANATTCCCATNTNGNCNCGANCTCCATCAA]
consensusID : consensus_9360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1112 fasta sequence
[CCCCCGGTGGCGAGTCGAGAGGCTGCTACGTACGGTACGGTGCGTTCCCCGGTCGCTTGATACACCATGTTTACTACGCCGCTACTGGCCGGTCTAGAGGCGCACCGGGAACGGATCGGCCAGGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC-CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGG-TGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACC-GGCTCA-CGGC-GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGCACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCCTGCCTGCAATACTCGCTTCCACCGGTGCAACCGT-G-CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC-CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAATCCCCTGG-CGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTATCTGGCAGCTAACAAAATTTTGGGTTTTGGTTTTAGGATGAATTTTATAAAGGGTACAAGTGAGGCTCTAATGGCAGTAAACACACAAAAACGTTTTTAGAAAAGATACATTGACATTAAATACAAATAAAACATTCTGCCTTCC]
[+] EMBL CNS08QE7 [CCCCCGGTGGCGAGTCGAGAGGCTGCTACGTACGGTACGGTGCGTTCCCCGGTCGCTTGATACACCATGTTTACTACGCCGCTACTGGCCGGTCTAGAGGCGCACCGGGAACGGATCGGCCAGGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGG TGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACC GGCTCA CGGC GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGCACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCCTGCCTGCAATACTCGCTTCCACCGGTGCAACCGT G CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAATCCCCTGG CGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTATCTGGCAGCTAACAAAATTTTGGGTTTTGGTTTTAGGATGAATTTTATAAAGGGTACAAGTGAGGCTCTAATGGCAGTGAACACAC AAAACGTTTTTAGAAA ]
[+] EMBL CNS08P87 [ TGGCGA TCGAGA GCTGCTACGTACGGTACGGTGCGTTCCCCGGTCGCTTGAAACACCATGTTTACTACGCCGCTACTGGCCGGTCTAGAGGCGCACCGGGAACGGATCGGCCAGGCAGCGGGGCTACTGACGTTCG ACAGTACCTGGCGGGATGGTTTATATGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTCACGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGGATGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACC GGCTCA CGGC ]
[+] EMBL CNS097XW [ GCGAGTCGAGAGGCTGCTACGTACAGTACGGTGCGTTCCCCGGTCGGTTGAAACACCATGTTTACTACACCGCTACTGGCCGGTCTAGAAGCGCACCGGGAACGGATCGGCCAAGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTATTCACTGTGGTTCTGG TGGTACACGCCACCGAGCGGGCGAGGTGCACTCTACC GGTTCA CGGC GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCGTATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGCACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCTTGCCTGCGATACTCGCTTCCACCGGTGCAA CGT GTCTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACGGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAAAGATAATCCCCTGG CGGGCCGAGTGGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATGTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTTCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCT ]
[+] EMBL CNS09CPD [ CGAGTCGAGAGGCTGCTACGTACAGTACGGTGCGTTCCCCGGTCGGTTGAAACACCATGTTTACTACACCGCTACTGGCCGGTCTAGAAGCGCACCAGGAACGGATCGGCCAAGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTATTCACTGTGGTTCTGG TGGTACACGCCACCGAGCGGGCGAGGTGCACTCTACC GGTTCA CGGC GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCGTATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGCACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCTTGCCTGCGATACTCGCTTCCACCGGTGCAACCGT G CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACGGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAAAGATAATCCCCTGG CGGGCCGAGTGGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATGTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTAAAGATGGTTGTG ]
[+] EMBL CNS08GCI [ AGTCGAGAGGCTGCTACGTACGGTACGGTGCGTTCCCCGGTCGCTTGATACACCATGTTTACTACGCCGCTACTGGCCGGTCTAGAGGCGCACCGGGAACGGATCGGCCAGGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGG TGGTACACGCCTCCGAGCGGGCGAGGTGCGCTTTACCGGGCTCACCGGCGGGCGGTGGg ]
[+] EMBL CNS08ROB [ CGAGAGGCTGCTACGTACGGTACGGTGCGTTCCCCGGTCGCTTGATACACCATGTTTACTACGCCGCTACTGGCCGGTCTAGAGGCGCACCGGGAACGGATCGGCCAGGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGG TGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACC GGCTCA CGGC GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGCACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGCTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCCTGCCTGCAATACTCGCTTCCACCGGTGCAACCGT G CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAATCCCCTGG CGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTATCTGGCGGCTAAC AAATTTTGGG TTTGGTTTTAGGATGAATTTTATAAAGGGTA ]
[+] EMBL CNS08G2C [ CCCGGTCGCTTGATACACCATGTTTACTACGCCGCTACTGGCCGGTCTAGAGGCGCACCGGGAACGGATCGGCCAGGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGG TGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACC GGCTCA CGGC GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGCACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCCTGCCTGCAATACTCGCTTCCACCGGTGCAA CGTGG CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAATCCCCTGG CGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTAC ]
[-] EMBL CNS08QE8 [ GCACCGGGAACGGATCGGCCAGGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGACATTAGGCGCCGCGGCACATCGGCCGGCGTTTCAACCCTTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGG TGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACC GGCTCA CGGC GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGGACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCCTGCCTGCAAAACTCGCTTCCACCGGTGCAACCGT G CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAAT CCCTGG CGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTATCTGGCAGCTAACAAAATTTTGGGTTTTGGTTTTAGGATGAATTTTATAAAGGGTACAAGTGAGGCTCTAATGGCAGTAAACACACAAAAACGTTTTTAGAAAAGATACATTGACATTAAATACAAATAAAACATTCTGCCTT ]
[-] EMBL CNS08ROC [ GCGGCACATCGGCCGGCGTTTC CAACCTCGCTTCATCGGTGGCTGTGGACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTAACTAACTGTGGTTCTGG TGGTACACGCCTCCGAGCGGGCGAGGTGCGCTCTACC GGCTCA CGGC GGCGGTGGCAACTGTTACAGCTGGTCTGTACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGAACTCGCTTTCATCGCCCTACCGCTGGCTCAGTTGCGCTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCCTGCCTGCAAAACTCGCTTCCACCGGTGCAACCGT G CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAAT CCCTGG CGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTTTCTGGCGGCTAACAAAATTTTGGGTTTTGGTTTTAGGATGAATTTTATAAAGGGTACAAGTGAGGCTCTAATGGCAGTAAACACACAAAAACGTTTTTAGAAAAGATACATTGACATTAAATACAAATAAAACATTCTGCCTGCC]
[-] EMBL CNS097XX [ caaaGCTTCGCTTCATCGGTGGCTGTGAACTCTCCATCCTTCAGCTGCAGTACTC CGAGAAGCTTCAAGCACCGGAACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTTATTCACTGTGGTTCTGG TGGTACACGCCACCGAGCGGGCGAGGTGCACTCTACC GGTTCA CGGC GGCGGTGGCGACTGTAACAGCTGGTCTGTACGCGTATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGAACTCGCTTTCATCGCCCTACCGCTGGCTTAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCTTGCCTGCGAAACTCGCTTCCACCGGTGCAACCGT G CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACGGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCACACAGCAGTGGTGGTGAGAAGAAAAAGCAAAGATAAT CCCTGG CGGGCCGAGTGGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATGTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAGGGTGGTTGTTTATAGACAACTATTGTATCTGGCAGCTAACAAAATTTTGGTTTTTGGTTTTAGGTTGAATTTTATAAAGGGTACAAGTGAGGCTCTAATGGCAGTAAACACACAAAAACGTTTTTAGAAAAGATAGATTGACATTAAATACAAATAA ]
[-] EMBL CNS08G2D [ AAGCTTCAAGCACCGGCACTCATCTGGACCAGCATTTTCACGCTGGCCTTTTCGCTGCTTAACTAACTGTGGTTCTGG TGGTACACGCCTCCGGGCGGGCGAGGTGCGCTCTACC GGCTCA CGGC GGCGGTGGCGACTGTTACAGCTGGTCTGTACGCTTTTGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTACTGACCGTGCTGGAACTCGCTTTCATCGCCCTACCGCTGGCTAAGTTGCGTTCGATTATTCGCGCCAAAAGCAGCGCCGGGCTGCCCCTGCCTGCAAAACTCGCTTCCACCGGTGCAACCGT G CTGTGGCTTTTGTACGGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAAT CCCTGG CGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATGAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTTTCTGGCAGCTAACAAAATTTTGGGTTTTGGTTTTAGGATGAATTTTATAAAGGGTA ]
[+] EMBL CNS08RLQ [ GGACTGCTCATCAACAACACGTTCATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCATCTATCGTTGTTTATCATTTATCCAGCATCCA ]
[-] EMBL CNS09CPE [ aTGTGAACGGTTCAGCTATCGTTGTTTATCATTTATCCAGCATCCAC CAGCAGTGGTGGTGAGAAGAAAAAGCAAAGATAAT CCCTGG CGGGCCGAGTGGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATGTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAGGGTGGTTGTTTATAGACAACTATTGTATCTGGCAGCTAACAAAATTTTGGTTTTTGGTTTTAGGTTGAATTTTATAAAGGGTACAAGTGAGGCTCTAATGGCAGTAAACACACAAAAACGTTTTTAGAAAAGATAGATTGACATTAAATACAAA ]
[-] EMBL CNS08GCJ [ GTTGTTTATCATTTATCCAGCATCCCC CAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAATCCCCTGGCCGGGCCGAGTAGGTTTGGTAGAAAAATCCCTTTTCGAAGGAGGGATCTTGCTGAGGGTTGCGAGGAAGCGGAAAAGCTGTCCAACTGGCTGGACTACGATGATAAGGCGCATCGTGTACGCGAAACGAAATCAGCGTTTGCTACAGATGGTTGTGCTACAGATGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTTTCTGGCAGCTAACAAAATTTTGGGTTTTGGTTTTAGGATGAATTTTATAAAGGGTACAAGTGAGGCTCTAATGGCAGTAAACACACAAAAACGTTTTTAGAAAAGATACATTGACATTAAATACAAATAAAACATTCT ]
consensusID : consensus_9360#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[TTTTTTTTTTTACTTCCATTAAACCCTCACTTTTACCCTTTATAAAATTCATCCTAAAACCAAAACCCAAAATTTTTTTATCTTCCATATACAATATTTTTCTATAAACAACCACCTTTTCACCAACACATCATCTTTATCACAACCATCTTTATCAAACCCTTATTTCTTTTCCCTTACACCATTCCCCTTATCATCTTATTCCAACCATTTGGACAACTTTTCCCCTTCCTCCCAACCCTCAACAAAATCCCTCCTTCCAAAAGGGATTTTTCTACCAAACCTACTCGGCCCGCCAGGGATTATCATTTCTTTTTCTTCTCACCACCACTGCTGGTGGATTCTGGATAAATGATAAACAACGATAGC]
[+] EMBL CNS08RLR [TTTTTTTTTTTACTTCCATTAAACCCTCACTTTTACCCTTTATAAAATTCATCCTAAAACCAAAACCCAAAATTTTTTTATCTTCCATATACAATATTTTTCTATAAACAACCACCTTTTCACCAACACATCATCTTTATCACAACCATCTTTATCAAACCCTTATTTCTTTTCCCTTACACCATTCCCCTTATCATCTTATTCCAACCATTTGGACAACTTTTCCCCTTCCTCCCAACCCTCAACAAAATCCCTCCTTCCAAAAGGGATTTTTCTACCAAACCTACTCGGCCCGCCAGGGATTATCATTTCTTTTTCTTCTCACCACCACTGCTGGTGGATTCTGGATAAATGATAAACAACGATAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9360#0 ------------------------------------------------------------
consensus_9360#1 CCCCCGGTGGCGAGTCGAGAGGCTGCTACGTACGGTACGGTGCGTTCCCCGGTCGCTTGA 60
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 ------------------------------------------------------------
consensus_9360#1 TACACCATGTTTACTACGCCGCTACTGGCCGGTCTAGAGGCGCACCGGGAACGGATCGGC 120
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 ------------------------------------------------------------
consensus_9360#1 CAGGCAGCGGGGCTACTGACGGTCGCCCAGTACCTGGCGGGATGGTTTATTTGTAGCGAC 180
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 -------------------------------------------CAATATGCTCAAGCAGA 17
consensus_9360#1 ATTAGGCGCCGCGGCACATCGGCCGGCGTTTCACCGCTTCGCTTCATCGGTGGCTGTGGA 240
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 ATCCGAGGTTATCAGCTG-AGTACTCCGAGAAGCTTCA-GCAC-GGTACTCATCTGGACC 74
consensus_9360#1 CTCTCCATCCTTCAGCTGCAGTACTCCGAGAAGCTTCAAGCACCGGCACTCATCTGGACC 300
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 AGCATTTTCACGCTGGC-TTTTCGCTGCTTTACTCACTGTGGTTCTGGTGGTACACGCCT 133
consensus_9360#1 AGCATTTTCACGCTGGCCTTTTCGCTGCTTTACTCACTGTGGTTCTGGTGGTACACGCCT 360
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 CCGAGCGGGCGAGGTGCGCTCTACCGGCTCACGGCGGCGGTGGCGACTGTTACAGCTGGT 193
consensus_9360#1 CCGAGCGGGCGAGGTGCGCTCTACCGGCTCACGGCGGCGGTGGCGACTGTTACAGCTGGT 420
consensus_9360#2 -------------------TTTTTTTTTTTACTTCCATTA----AACCCTCACTTTTACC 37
* * * ** * ** * ** *
consensus_9360#0 CTATACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGG-TGGGCATGGTA 252
consensus_9360#1 CTGTACGCATATGGCGCCCAGGGCGATGGTCCCGACGTGATGTACCGGCTGGGCATGGTA 480
consensus_9360#2 CTTTATAAA-ATTCATCCTAAAACCAAAACCCAAAATTTTTTTATCTTCCATATACAATA 96
** ** * ** ** * * * ** * * * ** * * **
consensus_9360#0 CTGACCGTGCTTGGGNGCTCGCTTTCATACGCCCTACCGCTGGCTCAGGTTGCGTTCGAT 312
consensus_9360#1 CTGACCGTGCT--GGCACTCGCTTTCAT-CGCCCTACCGCTGGCTCAG-TTGCGTTCGAT 536
consensus_9360#2 TTTTTC-TATA--AACAACCACCTTTTC-------ACCAACACATCATCTTTATCACAAC 146
* * * * * ** *** *** ** * *
consensus_9360#0 TATTCGCCGCCAAAAGCAGCNGCCCGTGNGTGCCCCTTGAACTGACAAACTACTCGACTT 372
consensus_9360#1 TATTCGC-GCCAAAAGCAGCG--CCG-GGCTGCCCCT---GCCTGCAA--TACTCGCTT- 586
consensus_9360#2 CATCTTT-ATCAAACCCTTATTTCTT----TTCCCTTACACCATTCCCCTTATCATCTTA 201
** **** * * * *** * * * ** *
consensus_9360#0 ACCAACCGGTG--ACAAACCCGTGCCTGTTGGCTNATTCGTACCGCGACCTTGCTACATA 430
consensus_9360#1 --CCACCGGTGCAACCGTGCTGTGGCTTTTGTACGGACTGCTCATCAAC---AACACGTT 641
consensus_9360#2 TTCCAACCATTTGGACAACTTTTCCCCTTCCTCCCAACC-CTCAACAAAATCCCTCCTTC 260
* * * * * * * * * * * *
consensus_9360#0 CAAAGCAACGCAGCGTATCATAA--GTGGNNCCACGAANCAATCACTANCCGATGGGGTC 488
consensus_9360#1 CATAGTGGTCCAGAAAATCATAGCGATGGGTCTGTGCACAGTTCAGCTATCGTTGTTTAT 701
consensus_9360#2 CAAAAGGGATTTTTCTACCAAACCTACTCGGCCCGCCAGGGATTATCATTTCTTTTTCTT 320
** * * ** * * * * * *
consensus_9360#0 NGGTGACACGGGGTTCCAGGCTTAATCCGTTGGGTTTATATTCCAATTTTCATTCCCCAG 548
consensus_9360#1 CATTTATCCAGCATCCACCAGCAGTGGTGGTGAGAAGAAAAAGCAATGATAATCCCCTGG 761
consensus_9360#2 C--TCAC-CACCACTGCTGGTGGATTCTGGATAAATGATAAA-CAACGATAGC------- 369
* * * * * * *** *
consensus_9360#0 GGAATTCCAAACCAAGGCCANGNTAGGGTGGGGTTGAACGACACGAAACACANGCNCCTT 608
consensus_9360#1 -------CGGGCCGAG--TAGGTTTGGTAGAAAAATCCCTTTTCGAAGG--AGGGATCTT 810
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 GGTTAAAGTTCCCCCTGGACGAGNGACAGCAAAGAGGGGNGTAATGGNTNACAGAGAAAA 668
consensus_9360#1 GCTGAGGGTTGCGA--GGAAGCGGAAAAGCTGTCCAACTGGC--TGGACTACGATGATAA 866
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 AATCCCCCNTCTATACAACAAGGGAGGGGACTCCTNTGCCTTNGAGGGGNTNGG-GCCGA 727
consensus_9360#1 GGCGCATCGTGTACGCGAAACGAAATCAG---CGTTTGCTACAGATGGTTGTGCTACAGA 923
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 AGCNACAANGCCGGAAAACTGGTNGCCAANCTTCGGCGCTGACAAACAGAATGCNTACGG 787
consensus_9360#1 TGATGTGTTGGTGAAAAGGTGGTTGTTTATAGACAACTATTGTATCTGGCA-GCTAACAA 982
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 GGNCATTCGTTAACCNNGCGACACCACACAACCCCACCCNNCGC-CNCNCCACAATGGGC 846
consensus_9360#1 AATTTTGGGTT---TTGGTTTTAGGATG-AATTTTATAAAGGGTACAAGTGAGGCTCTAA 1038
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 CAGCCCCACACCNACTGAANCNTGCTNCGCCGTNACAACGCGNCCTGGCCTATCTNCANA 906
consensus_9360#1 TGGCAGTAAACACACAAAAACGTTTTTAGAAAAGATACATTGACATTAAATACAAATAAA 1098
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 TCCNCCCACAGCATCATCGCACNCNTGGTCCACCCNATCACAAACCACTCTCGGGACCCC 966
consensus_9360#1 ACATTCTGCCTTCC---------------------------------------------- 1112
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 AGGGCNCGCNACGGCATGGAACCACCNTTAACCGGCTACCCCACNTAGCGGNGCCCNCAN 1026
consensus_9360#1 ------------------------------------------------------------
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 GNGNAGCCAACANAACCAAANAATCTCACNACGACAGCCNCAATGCCCGTCNATACNACC 1086
consensus_9360#1 ------------------------------------------------------------
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 CNAAGCATTCTGCAGTNAACCACACTNNANCAAGNANGAAGAGCAGGCTGCCGTCGCGTC 1146
consensus_9360#1 ------------------------------------------------------------
consensus_9360#2 ------------------------------------------------------------
consensus_9360#0 ANATTCCCATNTNGNCNCGANCTCCATCAA 1176
consensus_9360#1 ------------------------------
consensus_9360#2 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||