|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1260 fasta sequence
[TTCTTGTATTGCCGACATCAATTAATTCAATCTTGTTCGTTTGGGACCCAGAAATACACGCACGCACGCACGCACACACACACACACCGCCAACAGCATTGGGGCCGTGTGAGCACATATCTCGCAAATTCAGTAATTGTTAGCTGCTTACAAGCGCTTATAGTACATTTCGTAGACGTGAGTGGATGCCACTGCGAGAGAGGAGGGGTAAGTAGGGGTAAGTAAATGGGTTCGGAAAGGTAAACGTGTTAGCAGGACAACAAGCGTGTGCATTCGGTGACCCGGAGTGCTGGTAGGGTCTGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGCAGAAGGAGTGAGTGAGGAAAGGGAGAGATAGAGAGAGAGAAAGAGACAGTAGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCC---CTCCTTCTCCCCTAGGCTTAGGCGAGCTGGTCCTGGCCGTTGGCGGTGTCCTGGTTTTTCATCACATCCGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCC-GAGCTGTGCGGGGCATTGCGC-TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCCTCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGCTTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCGCCCAAAAAAATCGATCCTTGCCCGCTCGGTCTGAGTCGTCCGGACGCGTGGGCGGACGCGTGGGCGG]
[+] EMBL CNS08W4N [TTCTTGTATTGCCGACATCAATTAATTCAATCTTGTTCGTTTGGGACCCAGAAATACACGCACGCACGCACGCACACACACACACACCGCCAACAGCATTGGGGCCGTGTGAGCACATATCTCGCAAATTCAGTAATTGTTAGCTGCTTACAAGCGCTTATAGTACATTTCGTAGACGTGAGTGGATGCCACTGCGAGAGAGGAGGGGTAAGTAGGGGTAAGTAAATGGGTTCGGAAAGGTAAACGTGTTAGCAGGACAACAAGCGTGTTCATTCGGTGACCCGGAGTGCTGGTAGGGTCTGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGCAGAAGGAGTTAGTAACGAAAGGGAGAAATAGAGAGAGAGAAAGAGACAGTAGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCC CTCCTTCTCCCCTAGGCTTAGGCGAGCTGGTCCTGGCCGTTGGCGGTGTCCTGGTTTTTCATCACATCCGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGC AAAAA GAGCTGTGCGGGGCATTGCGC TTTCGCTGTCACGACCGTTATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATTTTTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCCTCCGTGTGTTCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGC ]
[-] EMBL BM656805 [ ACGCACGCACACACACACACACCGCCAACAGCATTGGGGCCGTGTGAGCACATATCTCGCAAATTCAGTAATTGTTAGCTGCTTACAAGCGCTTATAGTACATTTCGTAGACGTGAGTGGATGCCACTGCGAGAGAGGAGGGGTAAGTAGGGGTAAGTAAATGGGTTCGGAAAGGTAAACGTGTTAGCAGGACAACAAGCGTGTGCATTCGGTGACCCGGAGTGCTGGTAGGGTCTGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGCAGAAGGAGTGAGTGAGGAAAGGGAGAGATAGAGAGAGAGAAAGAGACAGTAGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCC CTCCTTCTCCCCTAGGCTTAGGCGAGCTGGTCCTGGCCGTTGGCGGTGTCCTGGTTTTTCATCACATCCGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCC GAGCTGTGCGGGGCATTGCGC TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGcgg ]
[-] EMBL BX619907 [ CGCTTGTNATAGATTTCGTAGACGTGAGTGGATGCCACTGCGAGAGAGGAGGGGTAAGTAGG GTAAATGGGTTCGGAAACGTAAACGTGTTAGCAGGACAACAAGCGTGTGCATTCGGTGACCCGGAGTGCTGGTAGGGTCTGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGT GCAGAAGGATTGTGTGAGG AAGGGAGAGAT AGAGAGAGAAAGAGACAGTAGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCC CTCCTTCTCCCCTAGGCTCAGGCGAGCTGGTCCTGGCCGTTGGCGGTATCCTGGTTTTTCATCACATCCGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCC GAGCTGTGCGGGGCATTGCGC TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTC ]
[-] EMBL AGA285797 [ ATGCGCCCTTCTCCTCCTCCCCTAGGCTTAGGCGAGCTGGTCCTGGCCGTTGGCGGTATCCTGGTTTTTCATCACGTCCGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCC GAGCTGTGCGGGGCATTGCGC TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGT ]
[-] EMBL BM600882 [ TGGTTTTTCATCACATCCGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCCGGAGCTGTGCGGGGCATTGCGC TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTTTTTTGCGCACACCCCTCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACACAAGCGGGGTACACAACTTTCGCTCCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGCTTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCGCCCAAAAAAATCGATCCTTGCCCGCTCGG ]
[-] EMBL BM603603 [ ccgGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCC GAGCTGTGCGGGGCATTGCGC TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTTCGCACACCCCTCTGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACGCACACACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGCTTTAGGACCCACTGCTGGCTTTGGGATGGTGTTGcgg ]
[-] EMBL BM631497 [ GGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCC GAGCTGTGCGGGGCATTGCGC TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCCTCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACACAAGTGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCTATGGGAGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCT ]
[-] EMBL BM621242 [ TTGCGCTTTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCCTCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACACAAGTGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCTATGGGAGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGCTTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCGCCCAAAAAAATCGATCCTTGCCCGCTCCGTCTGAGTCGTCCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BX618585 [ TGTTTTGGTCCCTACCGCTTGCTTGCCGTACGGCGCTTTCGGACCCCCTGCTGGCTTTGGGATGGTGTTGGTGCCCCTGCCGTTTGCTGA ]
consensusID : consensus_9397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 996 fasta sequence
[AACAAGCGTGTGCATTCGGTGACCCGGAGTGCTGGTAGGGTCTGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGTAGAAGGATTGTGTGAGGAAGGGAGAGATAGAGAGAGAGAGAGAGAAAGAGACAGTAGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCCCTCCTTCACCCCTAGGCTTAGGCGAGCTGGTCCTGACCGTTGGCGGTATCCTGGTTTTTCATCACATCCGGTAGATCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCCGAGCTGTGCGGGGCAT-TGCGCTTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACAT-CCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCCTCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGAACACTGGCCAGTGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGTTTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCGCCCAAAAAAATCGATCCTTGCCCGCTCCGTCTGAGTCGTCTGGT-TTTGTTTTTCCA]
[-] EMBL CNS094FY [AACAAGCGTGTGCATTCGGTGACCCGGAGTGCTGGTAGGGTCTGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGTAGAAGGATTGTGTGAGGAAGGGAGAGATAGAGAGAGAGAGAGAGAAAGAGACAGTAGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCCCTCCTTCACCCCTAGGCTTAGGCGAGCTGGTCCTGACCGTTGGCGGTATCCTGGTTTTTCATCACATCCGGTAGATCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCCGAGCTGTGCGGGGCAT TGCGCTTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCCTCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGAACACTGGCCAGTGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGTTTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCGCCCAAAAAAATCGATCCTTGCCCGCTCCGTCTGAGTCGTCTGGT TTTGTTTTTCCA]
[-] EMBL CNS09IO3 [ ACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGTAGAAGGATTGTGTGAGGAAGGGAGAGATAGAGAGAGAGAGAGAGAAAGAGACAGTAGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCCCTCCTTCACCCCTAGGCTTAGGCGAGCTGGTCCTGACCGTTGGCGGTATCCTGGTTTTTCATCACATCCGGTAGATCGGGCGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCCGAGCTGTGCGGGGCATATGCG TTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACAT CCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCCTCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGAACACTGGCCAGTGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGTTTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCGCCCAAAAAAATCGATCCTTGCCCGCTCCGTCTGAGTCGTCTGGTGCTTCTTTT ]
[+] EMBL CNS094FZ [ CAATACGGGGGAAAAGGCTGCCAAGACCTTTGGTTAAAACGTGTGCAGTAAAAGGATTTTTTAAGGAAGGGAGAGATAGAGAGAGAGAGAGAGAAAGAGACAGTTGTAATAGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAGCCCGCCCATGCGCCCTCCTTCACCCCTAGGCTTAGGGGAGCTGGTCCTGACCGTTGGGGGTATCCTGGTTTTTCATCACATCCGGTAGATCGGGGGGCAGGGAGTAGGGTGTCAGCTCGAGCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCCGAGCTGTGCGGGGCAT TGCGCTTTCGCTGTCACGACCGTGATGCCGCAGTTCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGGGGCACTTTGAGTTTTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACAT CCATTTTGTCAAAGCAAATGCA ]
consensusID : consensus_9397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence
[CGCTAGCCCGAGCTGTGCGGGGGCATTGCGCTTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTTCGCACACCCCTCTGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACGCACACACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGCTTTAGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCCCCACGCGTCCGCGG]
[-] EMBL BM610733 [CGCTAGCCCGAGCTGTGCGGGGGCATTGCGCTTTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATGTTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATTTTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTTCGCACACCCCTCTGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACGCACACACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGCTTTAGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCCCCACGCGTCCGCGG]
[-] EMBL BM601449 [ CTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTCCGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCGTTGCGTGTATGTGTTGATCCTACTGCGATGACTGTTGCCTTCTCTTTTTCGCACACCCCTCTGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACGCACACACACACAAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAATGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGCTTTAGGACCCAATGCTGGCTTTGGG ]
consensusID : consensus_9397#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence
[GTTCGTCGGTTTTGTCGTCGAGTGTGTATGGCGATCGTTACCGTCCAGGCGACGCTAGACCGTATCCGTGCCAGCAAGAATCTGCTCAGCCAGCTGCAGTCGGACGATGCCCTGGAGTCGTACCGGTCCGAGACGCGCTCGAAGCTGAGCGAACAGACTGCCCGCAAGCTGGCGGACAAGATGGCGATGGTGAACAGCGACGAGGATGAGTTTGTCTCCACCGGCATGACGGCACGCAAGGCACTCAAGATCCGTGCCAGCACCGAATCGTCCTCGTTGGCCAAGAGCTCG]
[+] EMBL BX618119 [GTTCGTCGGTTTTGTCGTCGAGTGTGTATGGCGATCGTTACCGTCCAGGCGACGCTAGACCGTATCCGTGCCAGCAAGAATCTGCTCAGCCAGCTGCAGTCGGACGATGCCCTGGAGTCGTACCGGTCCGAGACGCGCTCGAAGCTGAGCGAACAGACTGCCCGCAAGCTGGCGGACAAGATGGCGATGGTGAACAGCGACGAGGATGAGTTTGTCTCCACCGGCATGACGGCACGCAAGGCACTCAAGATCCGTGCCAGCACCGAATCGTCCTCGTTGGCCAAGAGCTCG]
consensusID : consensus_9397#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[CCGAAAATTTATTCTTCCTCTCCCTCCTCGGATCCGGTGAGCATGCCGATCAGAGCAGCAGTGTCGATGTAGCCCTTATCGTCAATGACCATCTGATCGAATGCATCGTCAACCCCATCCTCGGTCTTCGTTCTCTTCTCCCAGAAGCAGATCGCCGAATTCAAAGAGGCTTTCGCGCTAATGGACAACGACAAGGATGGTGTCATTGGCAAGAACGATC]
[+] EMBL BM642694 [CCGAAAATTTATTCTTCCTCTCCCTCCTCGGATCCGGTGAGCATGCCGATCAGAGCAGCAGTGTCGATGTAGCCCTTATCGTCAATGACCATCTGATCGAATGCATCGTCAACCCCATCCTCGGTCTTCGTTCTCTTCTCCCAGAAGCAGATCGCCGAATTCAAAGAGGCTTTCGCGCTAATGGACAACGACAAGGATGGTGTCATTGGCAAGAACGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9397#0 TTCTTGTATTGCCGACATCAATTAATTCAATCTTGTTCGTTTGGGACCCAGAAATACACG 60
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 ------------------------------------------------------------
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 CACGCACGCACGCACACACACACACACCGCCAACAGCATTGGGGCCGTGTGAGCACATAT 120
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 ------------------------------------------------------------
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 CTCGCAAATTCAGTAATTGTTAGCTGCTTACAAGCGCTTATAGTACATTTCGTAGACGTG 180
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 ------------------------------------------------------------
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 AGTGGATGCCACTGCGAGAGAGGAGGGGTAAGTAGGGGTAAGTAAATGGGTTCGGAAAGG 240
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 ------------------------------------------------------------
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 TAAACGTGTTAGCAGGACAACAAGCGTGTGCATTCGGTGACCCGGAGTGCTGGTAGGGTC 300
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 ------------------AACAAGCGTGTGCATTCGGTGACCCGGAGTGCTGGTAGGGTC 42
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 TGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGCA 360
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 TGTCTCACACCAATACGGGGGAAAAGGCTGCCAAGACCTGTGGTTAGAACGTGTGCAGTA 102
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 GAAGGAGTGAGTGAGGAAAGGG-----AGAGATAGAGAGAGAGAAAGAGACAGTAGTAAT 415
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 GAAGGATTGTGTGAGGAAGGGAGAGATAGAGAGAGAGAGAGAGAAAGAGACAGTAGTAAT 162
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 AGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAG 475
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 AGTGTGAACGAAACACAGTAAACCCCAAACATTCTAGCTTTGGCCTCGCCCGCCCGCTAG 222
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 CCCGCCCATGCGCCCTCCTTCTCCCCTAGGCTTAGGCGAGCTGGTCCTGGCCGTTGGCGG 535
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 CCCGCCCATGCGCCCTCCTTCACCCCTAGGCTTAGGCGAGCTGGTCCTGACCGTTGGCGG 282
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 TGTCCTGGTTTTTCATCACATCCGGTAGGTCGGGCGGCAGGGAGTAGGGTGTCAGCTCGA 595
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 TATCCTGGTTTTTCATCACATCCGGTAGATCGGGCGGCAGGGAGTAGGGTGTCAGCTCGA 342
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 GCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCCGAGCTGTGCGGGG-CATTGCGCT 654
consensus_9397#2 ----------------------------CGCTAGCCCGAGCTGTGCGGGGGCATTGCGCT 32
consensus_9397#1 GCGACTCGAAGTCGCCATTTTCGCGCACCGCTAGGCCGAGCTGTGCGGGG-CATTGCGCT 401
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 TTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATG 714
consensus_9397#2 TTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATG 92
consensus_9397#1 TTCGCTGTCACGACCGTGATGCCGCAGTCCTGCAGCGTTTTGTCATCGTCCATCAGCATG 461
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 TTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATT 774
consensus_9397#2 TTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATT 152
consensus_9397#1 TTGTCTTTGTTGTATAGTCGTTGATCACGGGGAGGCACTTTGAGTATTCCTTCGATCATT 521
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 TTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTC 834
consensus_9397#2 TTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTC 212
consensus_9397#1 TTCTTCAGCTCGTACACCGGCGTCGTCTCTTTGGCATCGGTGAAAATCGTCGTCTTCTTC 581
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 CGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCG 894
consensus_9397#2 CGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCG 272
consensus_9397#1 CGCCGGATCATCATAAATACATCCATTTTGTCAAAGCAAATGCACTACCGCCGCTACTCG 641
consensus_9397#3 ------------------------------------------GTTCGTCGGTTTTG-TCG 17
consensus_9397#4 ------------------------------------CCGAAAATTTATTCTTCCTC-TCC 23
* **
consensus_9397#0 TTGCGTGTATGTGTTGATC-CTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCC 953
consensus_9397#2 TTGCGTGTATGTGTTGATC-CTACTGCGATGACTGTTGCCTTCTCTTTTTCGCACACCCC 331
consensus_9397#1 TTGCGTGTATGTGTTGATC-CTACTGCGATGACTGTTGCCTTCTCTTTTGCGCACACCCC 700
consensus_9397#3 TCGAGTGTGTATGGCGATCGTTACCGTCCAGGC-GACGCTAGACCGTATCCGTGC----C 72
consensus_9397#4 CTCCTCGGATCCGGTGAGC-ATGCCGATCAGA--GCAGCAGTGTCGATGTAGCCCTTATC 80
* * * ** * * * * * * ** * * * *
consensus_9397#0 TCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACAC 1013
consensus_9397#2 TCTGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACGCACACACACAC 391
consensus_9397#1 TCCGTGTGTCCTTTGACGCACAAACTACACAAACACGCACGCACGCACACACGCACACAC 760
consensus_9397#3 AGCAAGAATCTGCTCA---GCCAGCTGCAGTCGGACGATGCCCTGGAGTCGTACCGGTCC 129
consensus_9397#4 GTCAATGACCATCTGAT-CGAATGCATCGTCAACCCCATCCTCGGTCTTCGTTCTCTTCT 139
* * * * * * * * *
consensus_9397#0 AAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAA 1073
consensus_9397#2 AAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAA 451
consensus_9397#1 AAGCGGGGTACACAACTTTCGCTTCGGAGAATCCTGCGATCGGTGAGCGCTGGCTGGCAA 820
consensus_9397#3 GAGACGCGCTCGAAGCTGAGCGAACAGACTGCCCGCAAGCTGGCGGACA--AGATGGCGA 187
consensus_9397#4 CCCAGAAGCAGATCGCCGAATTCAAAGAG-GCTTTCGCGCTAATGGACA----ACGACAA 194
* * ** * * * * *
consensus_9397#0 TGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGC 1133
consensus_9397#2 TGGGGGAGGACACTGGCCACGGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGC 511
consensus_9397#1 TGGGGGAGAACACTGGCCAGTGGATGTTTTGGTCACTACCGCTTGCTTGCCGTACGGCGT 880
consensus_9397#3 TGGTGAACAGCGACGA-----GGATGAGTTTGTCTCCACCGGCATGACGGCACGCAAGGC 242
consensus_9397#4 GGATGG-TGTCATTGGCAA--GAACGATC------------------------------- 220
* * * * * * *
consensus_9397#0 TTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCG 1193
consensus_9397#2 TTTAGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCCCCACGCGTCCGCGG------- 564
consensus_9397#1 TTTCGGACCCACTGCTGGCTTTGGGATGGTGTTGGTGCACCTGCCGTTTGCTGATTAGCG 940
consensus_9397#3 ACTCAAGATCCGTGCCAGCACCGA-ATCGTCCTCGTTGGCCAAGAGCTCG---------- 291
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 CCCAAAAAAATCGATCCTTGCCCGCTCGGTCTGAGTCGTCCGGACGCGTGGGCGGACGCG 1253
consensus_9397#2 ------------------------------------------------------------
consensus_9397#1 CCCAAAAAAATCGATCCTTGCCCGCTCCGTCTGAGTCGTCTGGTTTTGTTTTTCCA---- 996
consensus_9397#3 ------------------------------------------------------------
consensus_9397#4 ------------------------------------------------------------
consensus_9397#0 TGGGCGG 1260
consensus_9397#2 -------
consensus_9397#1 -------
consensus_9397#3 -------
consensus_9397#4 -------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||