These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CCGCCCACGCGTCCGGACATCTTTCTTTTCTGCTTCTACCACGTTTTACACAAGTTGTGGTTCGGACAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAAGGGCTGCGAGGTGGTGGTCTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATGGCAAGA] [+] EMBL BM592567 [CCGCCCACGCGTCCGGACATCTTTCTTTTCTGCTTCTACCACGTTTTACACAAGTTGTGGTTCGGACAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAAGGGCTGCGAGGTGGTGGTCTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATGGCAAGA] consensusID : consensus_945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [GGTGATCGCCGCGCTGAAGATGCACGCCGGTGACGCTCGGCCAGACAAGTACAAGGATTACCCGAAAAAGGGGGGCTACGTGCCGGTCTATGTGCGCTACCCCAACCAAAAGCTCGGTGCGATCAGTCCGGAGTGGGCGGCTGCCTTTCAGGAAAGCTCGGGACGTAGCTCCAGGGGAAAGCTGATCCAGGAACTGAACCGTCCGGGACGCTCCCCCTCCGAGTCGAGCAGTGACGAGGAACTGCACAACGACATCACCGCGAAGCCCAAGGCAGTCAAGGGGGACTCGAACAGCAGCGAAAGGAACTCTAACTCGAACGAAACCATCTCGAACGAAAAGGAAGCAAAGGAGGCGAACTAGGAGCCGCGGAAGC] [+] EMBL BX610284 [GGTGATCGCCGCGCTGAAGATGCACGCCGGTGACGCTCGGCCAGACAAGTACAAGGATTACCCGAAAAAGGGGGGCTACGTGCCGGTCTATGTGCGCTACCCCAACCAAAAGCTCGGTGCGATCAGTCCGGAGTGGGCGGCTGCCTTTCAGGAAAGCTCGGGACGTAGCTCCAGGGGAAAGCTGATCCAGGAACTGAACCGTCCGGGACGCTCCCCCTCCGAGTCGAGCAGTGACGAGGAACTGCACAACGACATCACCGCGAAGCCCAAGGCAGTCAAGGGGGACTCGAACAGCAGCGAAAGGAACTCTAACTCGAACGAAACCATCTCGAACGAAAAGGAAGCAAAGGAGGCGAACTAGGAGCCGCGGAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_945#0 CCGCCCACGCGTCCGGACATCTTTCTTTTCTGCTTCTACCACGTTTTACACAAGTTGTGG 60 consensus_945#1 ------------------------------------------------------------ consensus_945#0 TTCGGACAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTT 120 consensus_945#1 ------------------------------------------------------------ consensus_945#0 CCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGT 180 consensus_945#1 -------------------------------------------GGTGATCGCCGCGCTGA 17 * ** * ** * consensus_945#0 GGAGGTCCGT--GTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAG 238 consensus_945#1 AGATGCACGCCGGTGACGCTCGGCCAGACAAGTACAAGGATTACC-CGAAAAAGGGGGGC 76 ** * ** ** **** ** *** * * ** * * * consensus_945#0 AACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGT 298 consensus_945#1 TACGTGCCGGTCTATGTGCGCTACCCCAACCAAAAGCTCGGTGCGATCAGTCCGGAGTGG 136 ****** ** * * * ** ** ** **** ** ** * ** * consensus_945#0 TTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCC-ACCCGCGGTCT 357 consensus_945#1 G-CGGCTGCCTTTCAGGAAAGCTCGGGACGTAGCTCCAGGGGAAAGCTGATCCAGGAACT 195 *** * * * * ** * * * * *** * ** * ** * ** * ** consensus_945#0 GTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGGGCTGGCCGTGCG 417 consensus_945#1 G-----AACCGTCCGGG----ACGCTCCCCCTCCGAGTCGAGCAGTGACGAGGAACTGCA 246 * * ** * ** * * ** * ** ** * *** ** *** consensus_945#0 CCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAAGGGCTGCGAGGT 477 consensus_945#1 CAACG---ACATCACCGCGAAGCCCAAGGCAGTCAAGGGGGACTCGAACAGCAGCGAAA- 302 * ** * * * * ** * * ** ** * * ** ** **** consensus_945#0 GGTGGTCTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACT 537 consensus_945#1 GGAACTCTAACTCGAACGAAACCATCT-CGAACGAAAAGGAAGCAAA--GGAGGCGAACT 359 ** *** * * * * ** ** * ** ** * * * * ** *** consensus_945#0 GATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCT 597 consensus_945#1 -AGGAGCCGCGGAAGC-------------------------------------------- 374 * ** ** ** consensus_945#0 GCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATG 657 consensus_945#1 ------------------------------------------------------------ consensus_945#0 GCAAGA 663 consensus_945#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||