These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1417 fasta sequence [CCGCAACGGGCTGACCTCGAGCAGGGGCTGCAGTTTCCTTTATTTTGCGTAGTTCGTCAGCCGACCAAACACAAGCAGAGCG-ACAGTTTTCTTGTGCTTTGTGCTTGC-CTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAG-GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCG-GCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAAATCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG-ACGGTGGTCGTGCGGGGCGGCGAC-AAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG-CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA] [+] EMBL BM609184 [CCGCAACGGGCTGACCTCGAGCAGGGGCTGCAGTTTCCTTTATTTTGCGTAGTTCGTCAGCCGACCAAACACAAGCAGAGCG ACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAG GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCG GCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAAATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG ACGGTGGTCGTGCGGGGCGGCGAC AA ] [+] EMBL CNS09Q70 [ aTTCGTCAGCCGACCAAACACAAGCAGAGCGAACAGTTTTCTTGTGCTTTGTGCTTGC CTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGCGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGCGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG ACGGTGGTCGTGCGGGGCGGCGAC AAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCACGGGCA CTGACAACAGAGCCTCCAGTTCGGGCAGGACATGCTGCTCGAG ] [+] EMBL BX604056 [ AAGCAGAGCG ACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAG GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAATTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCT ] [+] EMBL CNS09DH8 [ TGTGCTTGC CTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAG GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGA ] [+] EMBL BX608724 [ TCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG ACGGTGGTCGTGCGGGGCGGCGAC AAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCTTTTTTAGCTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTC ] [+] EMBL CNS092TP [ AACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGAACGGTGGTCGTGCGGGGCGGCGACAAAGCAGCAGAAGCTCCAGGTC ] [+] EMBL BM612697 [ ccgGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGGGTATTTCTCGCGTGCGAC ] [-] EMBL CNS09CHQ [ GCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCTTTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA] [-] EMBL CNS09Q71 [ TCGGGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATAGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA] [+] EMBL BX613392 [ CAGCAGAGCGAAGTGATTGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGCTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCG ] [+] EMBL AGA281143 [ tTTTTTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCG ] consensusID : consensus_9475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1385 fasta sequence [CCGGCCGACCAAGCACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGAAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACAATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGACNGTGGTCGTGCGGGGCGGCGACNAGCAGCAGAAGCTNCAGGTCGAGAAGCTCACCTCCGACTTTCAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGGCAAGATGAAGCAGGTGTTCCTGGTGGACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGGTAGGGTGCACATTCGTGGACGCGGTGTTATTGTTCCTTTTTTACTAAAATCCTTCTTTTTACACTTTTGCTACTGTAGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGCTTGTTTTGTTTGTTTGGGGAGGGATATTGTGGGATTTCG] [+] EMBL BM649350 [CCGGCCGACCAAGCACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGAAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACAATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACC ] [+] EMBL BX626585 [ TTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTG AGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGAAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACAATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGACNGTGGTCGTGCGGGGCGGCGACNAGCAGCAGAAGCTNCAGGTCGAGAAGCTCACCTCCGACT ] [+] EMBL BX616172 [ gcactctgCCGGACGCA AACGGACGCGCGGGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGCACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGACGGTGGTCGTGCGGGGCGGCGACAAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTTCAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGGCAAGATGAAGCAGGTGTTCCTGGTGGACGCTTCCCAGGCGGACGATCTGGCGA ] [+] EMBL BX606699 [ ATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGGTAGGGTGCACATTCGTGGACGCGGTGTTATTGTTCCTTTTTTACTAAAATCCTTCTTTTTACACTTTTGCTACTGTAGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGCTTGTTTTGTTTGTTTGGGGAGGGATATTGTGGGATTTCG] consensusID : consensus_9475#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [AGAATNGCCCGAGGTTTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATTAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCTGGCGCAAGGTTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGNAAAACGCTTTCCTTTTTAGTATGTATGNAAGNGGGAGGGATATTNGTGGGATTATCGTAACAGGGGGCTCGTACCTCCGGGCTAACCGAGGATATTCATGGTCGAGACGATGGCGTATTCCTTTCTTCTTATGGTATGTATATTGAACATATACTTTTAATGTGTATTTCTCGCGGTGCGA] [+] EMBL AL930838 [AGAATNGCCCGAGGTTTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATTAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCTGGCGCAAGGTTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGNAAAACGCTTTCCTTTTTAGTATGTATGNAAGNGGGAGGGATATTNGTGGGATTATCGTAACAGGGGGCTCGTACCTCCGGGCTAACCGAGGATATTCATGGTCGAGACGATGGCGTATTCCTTTCTTCTTATGGTATGTATATTGAACATATACTTTTAATGTGTATTTCTCGCGGTGCGA] consensusID : consensus_9475#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CAGACGACAGTTTTCTTGTGCTTTGTGCTTGCATCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCACGGCAGC] [+] EMBL CNS09CHP [CAGACGACAGTTTTCTTGTGCTTTGTGCTTGCATCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCACGGCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9475#1 --------------------------------------------------------CCGG 4 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 CCGCAACGGGCTGACCTCGAGCAGGGGCTGCAGTTTCCTTTATTTTGCGTAGTTCGTCAG 60 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 CCGACCAAGCACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCG 64 consensus_9475#3 ---------------CAGA-CGACAGTTTTCTTGTGCTTTGTGCTTGCA-TCCGTTTTCG 43 consensus_9475#0 CCGACCAAACACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCC-TCCGTTTTCG 119 consensus_9475#2 -------------AGAATNGCCCGAGGTTTTTTACTCCAAAAGCCAGCAGAGTATAGCGG 47 * * ** *** ** * ** ** * * consensus_9475#1 CT--------GTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAG 116 consensus_9475#3 CT--------GTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAG 95 consensus_9475#0 CT--------GTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAG 171 consensus_9475#2 CCAAGATTAAGCAGGTGTTCCTGGTGAACGCTTCCCAGG--CGGACGATCTGGCGAACGA 105 * * *********** * * * * * ** ** ** ** * consensus_9475#1 CGCGCCTCTGTTGGACACCGTTCGTCCA-AGTAGAGGACGCAACCGCACGCACACCCGAC 175 consensus_9475#3 CGCGCCTCTGTTGGACACCGTTCGTCCA-AGTAGAGGACGCAACCGCACGCACACCCGAC 154 consensus_9475#0 CGCGCCTCTGTTGGACACCGTTCGTCCA-AGTAGAGGACGCAACCGCACGCACACCCGAC 230 consensus_9475#2 CGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG-C 164 *** * ** *** * * ** ** * *** * *** ** * * * consensus_9475#1 GGGAGTGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCC 235 consensus_9475#3 GGGAGTGAG--------------------------------------------------- 163 consensus_9475#0 GGGAGTGAG--------------------------------------------------- 239 consensus_9475#2 AACAGAGCC--------------------------------------------------- 173 ** * consensus_9475#1 CCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACT 295 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 ------------------------------------------------------------ consensus_9475#2 ------------------------------TCCAGTTCGAGCAGGACATGCTGCTCGAGC 203 consensus_9475#1 GCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGAC 355 consensus_9475#3 ------------------------------------TGCACCGGGAGTGTCCCCGGAGAC 187 consensus_9475#0 ------------------------------------TGCACCGGGAGTGTCCCCGGAGAC 263 consensus_9475#2 GGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGG 263 ** ** * * * * ** consensus_9475#1 AGCCA-GCAA-GTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAA 413 consensus_9475#3 AGCCA-GCAA-GTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAA 245 consensus_9475#0 AGCCA-GCAA-GTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAA 321 consensus_9475#2 AGCTAAGCAACATCACTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGG 323 *** * **** *** * ** * * ** *** *** * ** ** consensus_9475#1 CGAGATTACGG----TGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTC 469 consensus_9475#3 CGAGATTACGG----TGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTC 301 consensus_9475#0 CGAGATTACGG----TGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTC 377 consensus_9475#2 CCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCA 383 * * ** * * **** ** *** * * ** * * * * * consensus_9475#1 GGACGGAAACTTTG-GCGGGTTCAGCCCGACCGAGTTCATC-TCGCTGAGCGAATCGATT 527 consensus_9475#3 GGACGGGAACTTTG-GCGGGTTCAGCCCGACCGAGTTCATC-TCGCTGAGCGAATCGATT 359 consensus_9475#0 GGACGGGAACTTTG-GCGGGTTCAGCCCGACCGAGTTCATC-TCGCTGAGCGAATCGATT 435 consensus_9475#2 GAACCGGTACCTGGCGCAAGGTTG--CTGATCCTGCTGATCGTCGCTGTGATATTGGGTC 441 * ** * ** * * ** * * * ** * * * *** ****** * * * * * consensus_9475#1 --GCGGCGAACA-CAATCTTCGTG---AAGC---AGAGCTGGCAGTTTCTGGAGAAGGCT 578 consensus_9475#3 --GCGGCGAACA-CGATCTTCGTG---AAGC---AGAGCTGGCAGTTTCTGGAGAAGGCT 410 consensus_9475#0 --GCGGCGAACA-CGATCTTCGTG---AAGC---AGAGCTGGCAGTTTCTGGAGAAGGCT 486 consensus_9475#2 TCGTGGTGACCGGCCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGNAAAACGCTT 501 * ** ** * * ** * *** **** * **** * * * * * * consensus_9475#1 AACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAAT--GATA 636 consensus_9475#3 AACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAAT--GACA 468 consensus_9475#0 AACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAAATCAAT--GACA 544 consensus_9475#2 TCCTTTTTAGTATGTATGN--AAGNGGGAGGGATATTNGTGGGATTATCGTAACAGGGGG 559 * * * * * *** * * ***** * ** * consensus_9475#1 TACAAACCGGCA---CGAATCAG------CGGATAGGCACCACCACCAAGGACC-TGCAG 686 consensus_9475#3 TTCAAACGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGG 528 consensus_9475#0 TTCAAACGGGCA---CGAATCAG------CGGATAGGCACCACCACCAAGGACC-TGCAG 594 consensus_9475#2 CTCGTACCTCCGGGCTAACCGAGGA--TATTCATGGTCGAGACGATGGCGTATT-CCTTT 616 * ** * * ** * * * * * consensus_9475#1 CGGTTGACNGTGGTCGTGCGGGGC---GGCGACNAGCAGCAGAAGCTNCAGGTCGAGAAG 743 consensus_9475#3 CGAACGACGCCGG-CATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAG--CGGCACG 585 consensus_9475#0 CGGTTGACGGTGGTCGTGCGGGGC---GGCGACAAGCAGCAGAAGCTCCAGGTCGAGAAG 651 consensus_9475#2 CTTCTTATGGTATGTATATTGAAC---ATATACTTTTAATGTGTATTTCTCG-CGGTGCG 672 * * * * * * * * * ** * consensus_9475#1 CTCACCTCCGACTTTCAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCG 803 consensus_9475#3 GCAGC------------------------------------------------------- 590 consensus_9475#0 CTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCG 711 consensus_9475#2 A----------------------------------------------------------- 673 consensus_9475#1 GGCAAGATGAAGCAGGTGTTCCTGGTGGACGCTTCCCAGGCGGACGATCTGGCGAACGAC 863 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 GCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGAC 771 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 GCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAA 923 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 GCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAA 831 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 CAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATT 983 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 CAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATT 891 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 GAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAG 1043 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 GAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAG 951 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 CAGAGCGAAGTGATTGGTAGGGTGCACATTCGTGGACGCGGTGTTATTGTTCCTTTTTTA 1103 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 CAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAG 1011 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 CTAAAATCCTTCTTTTTACACTTTTGCTACTGTAGACACAATCGAAAACT-CGATCGGCC 1162 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 AGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTG 1071 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 GAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGA 1222 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 CTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCG 1131 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 ACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGG 1282 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 AAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTG 1191 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 TGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTT 1342 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 GGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTA 1251 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 TAGCTTGTTTTGTTTGTTTGGGGAGGGATATTGTGGGATTTCG----------------- 1385 consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 TGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTAT 1311 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 ------------------------------------------------------------ consensus_9475#3 ------------------------------------------------------------ consensus_9475#0 TTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAA 1371 consensus_9475#2 ------------------------------------------------------------ consensus_9475#1 ---------------------------------------------- consensus_9475#3 ---------------------------------------------- consensus_9475#0 AAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA 1417 consensus_9475#2 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||