These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1244 fasta sequence [CCGCGGACGCGTGGGTCACTTCATTGATAGCATTCGATCGGGACGGTACTCGGCGTCGGTCTTGGGAAAAAGTGTGTCGCGAGCGCCTCGTGGAAAGCAGTAGCGTGTGCCAAAAGGATTCGC-AAA--C-CGTGTGACTCGGTGGACTCAAGTGTGAC---AGTGTGCTAGTGGACATTGTTTGCAAGAGAAGAAGGAGACATTTTCGCTTATAAACGAAGTGC-GTTCAATCAGGACATTTTACAGTTGAAAGATAAAACAGTGCAGAAAAGTACACATTCAGCGATGGAGTTCAGAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAACAACTGCGTCTCATAGA-TCATCTGCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT-GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC-GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCA-------CTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATCGGTTATTTATTCACT---AGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACGGACACACGCGTTTGGTAGCTAGCT--GCAAGGCACGCTGT-GGGCTACGAATAGTTAGAATAATTGCCTTAAAAATAAAGCTTTTTATATATG] [+] EMBL BM610745 [CCGCGGACGCGTGGGTCACTTCATTGATAGCATTCGATCGGGACGGTACTCGGCGTCGGTCTTGGGAAAAAGTGTGTCGCGAGCGCCTCGTGGAAAGCAGTAGCGTGTGCCAAAAGGATTCGCAAAA CTCGTGTGACTCGGTGGACTCAAGTGTGACTCAAGTGTGCTAGTGGACATTGTTTGCAAGAGAAGAAGGAGACATTTTCGCTTATAAACGAAGTGC GTTCAATCAGGACATTTTACAGTTGTAAGATAAAACAGTGCAGAAAAGTACACATTCAGCGATGGAGTTCAGAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACACCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAACAACTGCGTTTTATAGA TCATCTGCTTCGCAGCAGGGCAGCAGCCGAGAGCAGGAAGGCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAG ] [+] EMBL BM621073 [ ccgcTCACTTCATTGATAGCATTCAATCGGGACGGTACTCGGCGTCGGTCTTGGGAAAAAGTGTGTCGCGAGCGCCTCGTGGAAAGCAGTAGCGTGTGCCAAAAGGATTCGC AAAACC CGTGTGACTCGGTGGACTCAAGTGTGACTCAAGTGTGCTAGTGGACATTGTTTGCAAGAGAAGAAGGAGACATTTTCGCTTATAAACGAAGTGC GTTCAATCAGGACATTTTACAGTTGAAAGATAAAACAGTGCAGAAAAGTACACATTCAGCGATGGAGTTCAGAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAACAACTGCGTCTCATAGA TCATCTGCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGGCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCAGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACCAAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCT ] [+] EMBL AF283266 [ TCATTGATAGCATTCGATCGGGACGGTACTCGGCRTCGGTCTTGGGAAAAAGTGTGTCGCGAGCGCCTTGTGGAAAGCAGTAGCGTGTGCCAAAAGGATTCGC AAA C CAT TAATTCGGTGGACTCAAGTGTGAC AGTGTGAAAGTGAACATTGTTTGCAAGAGGAGAAGGAGACATTTTCGCTTACAAACGAAGTGC GTTCAATAAGGACATTTTGCAGTTGAAAGATAAAACAGTGCAGAAGAGTACACATTCAGCGATGGAGTTCAAAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTACGGCACAGCAAACAACTGCGTCTCATAGA TCATCTGCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAACGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGCTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCA CTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATCGGTTATTTATTCACT AGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGC AAAAAAGGAAACTGCACGCGTCTTATATAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGAAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCGAGAGCAACGGTCGCACGCGTTTGGTAGCTAGCT GCAAGGCACGCTGT GGGCTACGAATAGTTAGAATAATTGCCTTAAAAATAAAGCTTTTTATATATG] [+] EMBL CNS09EVR [ GATAGCATTCGATCGGGACGGTACTCGGCGTCGGTCTTGGGAAAAAGTGTGTCGCGAGCGCCTTGTGGAAAGCAGTAGCGTGTGCCAAAAGGATTCGC AAA C CAT TAATTCGGTGGACTCAAGTGTGAC AGTGTGAAAGTGAACATTGTTTGCAAGAGGAGAAGGAGACATTTTCGCTTACAAACGAAGTGCAGTTCAATAAGGACATTTTGCAGTTGAAAGATAAAACAGTGCAGAAGAGTACACATTCAGCGATGGAGTTCAAAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTACGGCACAGCAAACAACTGCGTCTCATAGA TCATCTGCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCA CTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATCGGTTATTTATTCACT AGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGC AAAAAAGGAAACTGCACGCGTCTTATATAGTCCTTCAAGCCAGAGCCATCCCCTCCCAAT ] [+] EMBL BM646872 [ ccgGGATTCGC AAAACC CGTGTGACTCGGTGGACTCAAGTGTGACTCAAGTGTGCTAGTGGACATTGTTTGCAAGAGAAGAAGGAGACATTTTCGCTTATAAACGAAGTGC GTTCAATCAGGACATTTTACAGTTGAAAGATAAAACAGTGCAGAAAAGTACACATTCAGCGATGGAGTTCAGAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAACAACTGCGTCTCATAGA TCATCTGCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGGCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCAGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACCAAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCTC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAG ] [+] EMBL BM608565 [ cCGC AAAACC CGTGTGACTCGGTGGACTCAAGTGTGAC AGTGTGAAAGTGAACATTGTTTGCAAGAGGAGAAGGAGACATTTTCGCTTACAAACGAAGTGC GTTCAATAAGGACATTTTGCAGTTGAAAGATAAAACAGTGCAGAAGAGTACACATTCAGCAATGGAGTTCAGAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTACGGCACAGCAAACAACTGCGTCTCATAGA TCATCTGCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTATGGGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCCGGGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTACCAG ] [-] EMBL CNS09EVS [ TCATAGATTCAT TTCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGCCTCACCATCAAAATGCCGACCCTCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGGTCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGAAACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTTTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCA CTGTATGACACCCTAGGGGAAAACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATCGGTTATTTATTCACT AGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCCTCTCGTCTGATTTCTCATAGC AAAAAAGGAAACTGCACGCGTCTTATATAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGAAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCGAGAGCAACGGTCGCAC ] [+] EMBL BM581643 [ ccgGGGCAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTACCAGCCACAAGCGCAAAACCTGCA CTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATTGATTATTTATTCACTAGAAGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACT ] [+] EMBL BM579062 [ ccgCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTACCAGCCACAAGCGCAAAACCTGCA CTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATTGATTATTTATTCACTAGAAGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCAAGAG ] [+] EMBL BX609391 [ GCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACCAAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCACCTGCACCTGTATGACACCCTAGGGGAAAACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATCGGTTATTTATTCACT AGAAGAAGAAGAAAAAAAGAAGCGAATTGTTCAGCGTTCGTCTCACCTCATCTCGTCTGGTATCTCAAAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACGGACACACGCGTTTGGTAGCTAGCT GCAAGGCAAGCTGT GGGCTACGAATAGTTAGAATAATTGCCTTAAAAATAAAGCTTTTT ] [+] EMBL BM639793 [ ccgAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTACCAGCCACAAGCGCAAAACCTGCA CTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATTGATTATTTATTCACTAGAAGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACGGACACACGCG TTGGTAGCTAGCTGAGCAAGGCACGCTGTGGGGCCACGAATAG ] [+] EMBL BM645754 [ ccgGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTAT GGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCC GGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTACCAGCCACAAGCGCAAAACCTGCA CTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATTGATTATTTATTCACTAGAAGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACGGACACACGCG TTGGTAGCTAGCTGAGCAAGGCACGCTGT GGGCCACGAAT ] consensusID : consensus_9476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGCGGACGCGTGGGTTTTTCCGTAATCATCAACAGGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTATGGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCCGGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTACCAGCCACAAGCGCAAAACCTGCACTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATTGATTATTTATTCACTAGAAGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACGAGACACACGCGTTGAGT] [+] EMBL BM598091 [CCGCGGACGCGTGGGTTTTTCCGTAATCATCAACAGGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACCAAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTATGGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCCGGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTACCAGCCACAAGCGCAAAACCTGCACTGTATGACACCCTAGGGGAACACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATTGATTATTTATTCACTAGAAGAAGAAGAAGAAGAAAAAAAGCGAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGATATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCATCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTAAATGTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATACTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACGAGACACACGCGTTGAGT] consensusID : consensus_9476#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [TCCCCCCCAGGTTACATTGATAGCATTCGATCGGGACGGTACTCGCGCGTCGGTCTTGGGAAAAAGTGTGACGCGAGCGCCTGGTGGAAAGCAATAGCGTGTGTCAAAAGGATTCGCAAAACCCGTGTGACTCGGTGGACTCAAGTGTGACTCAAGTGTGCTAGTGGACATTGTTTGCACAGAGGAGAAGGAGACATTTTCGCTTACAAACGAAGTGCGTTCAATAACGGACATTCTTGCAGTTGAAAGATAAAACAGCTGCAGAAGAGTACACATTCAGCGATGGAGTTCAAAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAACAACTGCGTCTTATAGATCATCTGCTTCGCAGCAGGACAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAACGCATTTCTACGACGCGGATTACAAACGTGTGCAGCAGTGTTACGAAGACGAGGACACTAAACGAGCTT] [+] EMBL AL934499 [TCCCCCCCAGGTTACATTGATAGCATTCGATCGGGACGGTACTCGCGCGTCGGTCTTGGGAAAAAGTGTGACGCGAGCGCCTGGTGGAAAGCAATAGCGTGTGTCAAAAGGATTCGCAAAACCCGTGTGACTCGGTGGACTCAAGTGTGACTCAAGTGTGCTAGTGGACATTGTTTGCACAGAGGAGAAGGAGACATTTTCGCTTACAAACGAAGTGCGTTCAATAACGGACATTCTTGCAGTTGAAAGATAAAACAGCTGCAGAAGAGTACACATTCAGCGATGGAGTTCAAAAGCAGCAAAAAGATGGTGATTTCCCTCCGGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAACAACTGCGTCTTATAGATCATCTGCTTCGCAGCAGGACAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAACGCATTTCTACGACGCGGATTACAAACGTGTGCAGCAGTGTTACGAAGACGAGGACACTAAACGAGCTT] consensusID : consensus_9476#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 513 fasta sequence [GCCGAGCGAAAAGTAGCGAAGGAAGGCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACCAAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTATGGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCCGGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCACCTGCACCTGTATGACACCCTAGGGGAAAACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATCGGTTATTTATTCACTAGAAGAAGAAGAAAAAAAGAAGCGAATTGTTCAGCGTTCGTCTCACCTCATCTCGTCTGGT] [+] EMBL BX617637 [GCCGAGCGAAAAGTAGCGAAGGAAGGCTCACCATCACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACCAAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTATGGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCCGGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCACCTGCACCTGTATGACACCCTAGGGGAAAACTTACATCCACGATAGTATTTATTATTGATAGTGTTTGCATCATCTCATCGCCATCGGTTATTTATTCACTAGAAGAAGAAGAAAAAAAGAAGCGAATTGTTCAGCGTTCGTCTCACCTCATCTCGTCTGGT] [+] EMBL BX610209 [ GCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACCAAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTATGGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCCGGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAACCTGCACCTGCACCTGTATGACACCCTAGGGGAAAACTTAC ] [+] EMBL BX609436 [ CGGAGATCGGCAGATTATGAAGATTTCTACGAAGCGGATTACAAGCGTGTGCAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACCAAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGCAAAGAGTACGTTTACTATGGGATACAGACGTAACCCGGCGAGATGGGTTCACTCTTCCCGGGGGGAATTCCGGGCATATTTCTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAATCTGCACCTGCACCTGTATGACACCCTAGGGGAAAACTTACATCCACGATAGTATTTATTATTGATATTGTTTGCATCATCTCATCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 CCGCGGACGCGTGGGTCACTTCATTGATAGCATTCGATCGGGACGGTACTCGGCGTCGGT 60 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 CTTGGGAAAAAGTGTGTCGCGAGCGCCTCGTGGAAAGCAGTAGCGTGTGCCAAAAGGATT 120 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 CGCAAACCGTGTGACTCGGTGGACTCAAGTGTGACAGTGTGCTAGTGGACATTGTTTGCA 180 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 AGAGAAGAAGGAGACATTTTCGCTTATAAACGAAGTGCGTTCAATCAGGACATTTTACAG 240 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 TTGAAAGATAAAACAGTGCAGAAAAGTACACATTCAGCGATGGAGTTCAGAAGCAGCAAA 300 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 AAGATGGTGATTTCCCTCCGGGTAGTGTTGGTGCTGGTGTGCCTGGTTAGCCTTATTTCA 360 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 CACGCCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAACAACTGCGTCTCATAGATCAT 420 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 -----------GCCGAGCGAAAAGTAGCGAAGGAAGGCTCACCATCACAATGCCGACCAT 49 consensus_9476#0 CTGCTTCGCAGTAGGGCAGCAGCCGAGAGCAGGAAGCCTCACCATCACAATGCCGACCAT 480 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ----------------------------------------CCGCGGACGCGTGGGTTTTT 20 consensus_9476#3 CAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTG 109 consensus_9476#0 CAGCATCGCCGGAGATCGGCAGATTATGAAGATTTCTACGACGCGGATTACAAGCGTGTG 540 consensus_9476#2 -------------------------------------------------------TCCCC 5 consensus_9476#1 CCGTAAT--CATCAACAGGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACC 78 consensus_9476#3 CAGCAGTGTTACGAAGACGAGGACATAAACGAGCTTTGCCAGCGCTGCTCGAAGGTGACC 169 consensus_9476#0 CAGCAGTGTTACGAAGATGAGGACATAAACGAGCTTTGCCAGCGCTGTTCGAAGGTGACC 600 consensus_9476#2 CCCAGGTTACATTGATAGCATTCGATCGGGACGGTACTCGCGCGTCGGTCTTGGGAAA-- 63 * * * * * * ** * * * *** * ** ** * consensus_9476#1 AAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGC 138 consensus_9476#3 AAGTCGTCGCTGGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGC 229 consensus_9476#0 AAGTCGTCGCTAGTGTTCCCGATGTGCTGCAACAATGAGGATCACACGATGACCTGGTGC 660 consensus_9476#2 AAGT-GTGACGCGAGCGCCTGGTGGAAAGCAATAGCGTGTGTCAAAAG--GATTCG---C 117 **** ** * * * ** * ** **** * * * *** * * ** * * consensus_9476#1 AAAGAGTACGTTTACTATGGGATACAGACGTAACCCG-GCGAGATGG-GTTCACTCTTCC 196 consensus_9476#3 AAAGAGTACGTTTACTATGGGATACAGACGTAACCCG-GCGAGATGG-GTTCACTCTTCC 287 consensus_9476#0 AAAGAGTACGTTTACTATGGGATACAGACGTAACCCG-GCGAGATGG-GTTCACTCTTCC 718 consensus_9476#2 AAAACCCGTGTGACTCGGTGGACTCAAGTGTGACTCAAGTGTGCTAGTGGACATTGTTTG 177 *** ** *** ** ** ** * * * * * * * ** * ** consensus_9476#1 CG-GGGGGAATTCCGGGCATATTT-CTCTCGTTCCAAGTTTACCAGCCACAAGCGCAAAA 254 consensus_9476#3 CG-GGGGGAATTCCGGGCATATTT-CTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAA 345 consensus_9476#0 CG-GGGGGAATTCCGGGCATATTT-CTCTCGTTCCAAGTTTAGCAGCCACAAGCGCAAAA 776 consensus_9476#2 CACAGAGGAGAAGGAGACATTTTCGCTTACAAACGAAGTGCGTT--CAATAACGGACATT 235 * * *** * *** ** ** * * **** * * ** * * consensus_9476#1 CCTGCAC-------TGTATGACACCCTAGGGGAACACTTACATCCA-CGATAGTATTTAT 306 consensus_9476#3 CCTGCACCTGCACCTGTATGACACCCTAGGGGAAAACTTACATCCA-CGATAGTATTTAT 404 consensus_9476#0 CCTGCAC-------TGTATGACACCCTAGGGGAACACTTACATCCA-CGATAGTATTTAT 828 consensus_9476#2 CTTGCAGTTGAAA-GATAAAACAGC-TGCAGAAGAGTACACATTCAGCGATGGAGTTCAA 293 * **** ** *** * * * * **** ** **** * ** * consensus_9476#1 TATTGATAGT--GTTTGCATCATCTCATCGCCATTGATTATTTATTCACTAGAAGAAGAA 364 consensus_9476#3 TATTGATAGT--GTTTGCATCATCTCATCGCCATCGGTTATTTATTCACTAGAAGAAGAA 462 consensus_9476#0 TATTGATAGT--GTTTGCATCATCTCATCGCCATCGGTTATTTATTCACTAGAAGAAGAA 886 consensus_9476#2 AAGCAGCAAAAAGATGGTGATTTCCCTCCGGGGTAGTGTTGGTGCTGGTGTGCCTGGTTA 353 * * * * * ** * ** * * * * * * * consensus_9476#1 GAAGAAGAAAAAAAGC-------GAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGA 417 consensus_9476#3 GAAAAA---AAGAAGC-------GAATTGTTCAGCGTTCGTCTCACCTCATCTCGTCTGG 512 consensus_9476#0 GAAGAA---AAAAAGC-------GAATTGTTCAGCGTTCGTCTCACCCCATCTCGTCTGA 936 consensus_9476#2 GCCTTATTTCACACGCCTCGGCAAGACCGTCGAGCGTGCGGCACAGCAAA---CAACTG- 409 * * * * ** * ** ***** ** * ** * * * *** consensus_9476#1 TATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCA 477 consensus_9476#3 T----------------------------------------------------------- 513 consensus_9476#0 TATCTCATAGCAAAAAAAGGAAACTGCACGCGTCTGATAAAGTCCTTCAAGCCAGAGCCA 996 consensus_9476#2 CGTCTTATAGATCATCTGCTTCGCAGCAGGACAGCAGCCGAGAGCAGGAAGCCTCACCAT 469 consensus_9476#1 TCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTA-AAT 536 consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 TCCCCTCCCAATTATTGGAGCTGTGATTGTACATAAGTTATATTGATGTCTTAGTA-AAT 1055 consensus_9476#2 CACAATGCCGACCATCAGCATCGCCGGAGATCGGCAGAT-TATGAACGCATTTCTACGAC 528 consensus_9476#1 GTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATA 596 consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 GTGTGTTTCGCACCTAAGGGAAGCAAAAACTGAGGGAGAGAAATTCGAAGGGCGAAGATA 1115 consensus_9476#2 GCGGATTACAAACGTGTGCAGCAGTGTTACGAAGACGAGGACACTAAACGAGCTT----- 583 consensus_9476#1 CTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACGAGACACACGCGTTGAGT---- 652 consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 CTTACCTAGCAGAAGTCACATAGTATTGCAAGAGCAACG-GACACACGCGTTTGGTAGCT 1174 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ------------------------------------------------------------ consensus_9476#3 ------------------------------------------------------------ consensus_9476#0 AGCTGCAAGGCACGCTGTGGGCTACGAATAGTTAGAATAATTGCCTTAAAAATAAAGCTT 1234 consensus_9476#2 ------------------------------------------------------------ consensus_9476#1 ---------- consensus_9476#3 ---------- consensus_9476#0 TTTATATATG 1244 consensus_9476#2 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||