These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1027 fasta sequence [AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTA--ACTATTTTTATTTCT-GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG-AGCG-TTGATGACGTCCCCACTCATATCTCAATGATGTCAG-AACGCTTTCATAA-A-CGGAAGCCATATTGAGAGCTGA-TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG-ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC-TCCATTA-TTTTAATACAGC-TGATACAGTA-AA-GGATCGTGGACACTGTGCCAAACCACGCCACGCTG-TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT-AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC-TTTCATCAATTACACTTAGCGAATTGTT-ATCATCTGCTGG-TGGTGCCTGACCCATCTCCATGTTCGAT-GTGATGTACCT-GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG--AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT----CGAAC----GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG---TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAAC-TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAAAGACATTTACGTAACC] [+] EMBL BX466766 [AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTAGCCCTATNTTTATTTCTGGCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAGAAGCGCTTGATNACGTCCCCACTCATATCTCAATGATGTCAGCAACGCTTTCATAANAGCGGAAGCCATATTGAGAGCTGACTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACCGTCCATTAGTTTTAATACAGCGTGATACAGTACAACGGATCGTGGACACTGTGCCAAACCACGCCACGCTGCTGGAAATAAGCTGTCCCCTCCTTTTACGAACTATTGAAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTCGTTTCATCAATTACACTTAGCGAATTGTTGATCATCTGCTGGATGGTGCCTGACCCATCTCCATGTTCGATAGTGATGTACCTNNGTTGACATCGAATACGATTGGAAAAACGTT ATACCAGGAAAATTAATCTGTTga ] [+] EMBL CNS099GD [ tttttttcaTTGTTTATATCACGTA GCTATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCCCTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCAAAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTGTCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAA ] [+] EMBL CNS0910B [ TA AACATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAA CACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAA ] [+] EMBL CNS097LS [ cct ACTATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTTAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCACCGGATGTGCCAAAAGTAGCCAGCCGGGTGTTGGGAA CACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATC ] [+] EMBL CNS08E1R [ ga aaaATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGC ] [-] EMBL CNS0910A [ ATTTTTATTTCT GCGAT AGAAATATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ] [+] EMBL CNS09CFV [ TTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTG ] [-] EMBL CNS099GC [ TCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACAAACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCCCTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTGTCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ] [+] EMBL CNS09BH4 [ GATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCGCATTAATG ] [-] EMBL CNS097LR [ TATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCACCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ] [-] EMBL CNS08E1Q [ G AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ] [-] EMBL BX627219 [ GAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCNTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCT ] [-] EMBL BX620921 [ TTCTCCAAGGGCATCGCGTGGTGATTTC TTTCATCAATTACGCATAGCGAATTGTT ATCATCNGCTGG TGGTGCCTGAACCATCTCCATGCTCGAT GTGATGTACCT GGTTGACATGGAATCCGATTGGAAAAACGTTAATNCCAG AAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAACGAANGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTNTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTTTTGCAGGACTGCAG TGGATTCATGCCGCGGATGACGCCTTTACCCGCCGGATGTGCCACAAGCCGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAGCGTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACAACAACTTGGCAGCTTT ] [-] EMBL CNS09CFU [ ttTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ] [-] EMBL AL933375 [ AAACGTTAATACCAG AAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTTTTGCAGGACTGCAG TGGATTCATGCCGCGGATGACGCCTTTACCCGCCGGATGTGCCACAAGCCGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAGC TAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACAACAACTTGGCAGCTTTCGTGGTGTAATATACGAAAACGTCCTTGTCACTCGAGGGCGCNAGAGAAAAGACATTTACGTAACC] [-] EMBL CNS09BH3 [ TTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCC ] consensusID : consensus_9539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [AACTGTTTCAATGTTTTTAATACATTGACAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAAGGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTAGATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACTACGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCAATTACACTTAGCGAATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCGATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTCGG] [-] EMBL BM623686 [AACTGTTTCAATGTTTTTAATACATTGACAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAAGGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTAGATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACTACGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCAATTACACTTAGCGAATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCGATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTCGG] consensusID : consensus_9539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [ATGTACCTTTAGGCAGTGCGCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAGCCGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTAATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCTAGCTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACACAACTGCAGCTTTCGTGGTGTAATATACGAGACGTCCTTTCAGTCGAGGCGCAAGAGAAAGACATTAAACT] [-] EMBL AL933439 [ATGTACCTTTAGGCAGTGCGCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAGCCGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTAATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCTAGCTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACACAACTGCAGCTTTCGTGGTGTAATATACGAGACGTCCTTTCAGTCGAGGCGCAAGAGAAAGACATTAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9539#0 AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTAACTATTTTTATTTCTGC 60 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 GATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGA 120 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 TCGAGAGCGTTGATGACGTCCCCACTCATATCTCAATGATGTCAGAACGCTTTCATAAAC 180 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 GGAAGCCATATTGAGAGCTGATGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCAC 240 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 AGAAGGGCAGAATATCCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTC 300 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 CATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACCACGCCAC 360 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 GCTGTGGAAATAAGCTGTCCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAA 420 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 --------------------------------AACTGTTTCAATGTTTTTAATACATTGA 28 consensus_9539#0 AGCTTATCACAGGGTATCGCGTTGTGATTTCTTTCATCAATTACACTTAGCGAATTGTTA 480 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 CAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAA 88 consensus_9539#0 TCATCTGCTGGTGGTGCCTGACCCATCTCCATGTTCGATGTGATGTACCTGGTTGACATC 540 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 GGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTA 148 consensus_9539#0 GAATCCGATTGGAAAAACGTTAATACCAGAAATTAATCTGTTTAGGTAGCGTCCCTCCTA 600 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 GATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTA 208 consensus_9539#0 GTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAA 660 consensus_9539#2 ------------------------------------------------------------ consensus_9539#1 GCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATG 268 consensus_9539#0 TAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAGTG 720 consensus_9539#2 ------------------------------------------ATGTACCTTTAGGCAGTG 18 consensus_9539#1 ATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTG 328 * * ** ** consensus_9539#0 CCGCTGGATTCAT-GCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAG 779 consensus_9539#2 C-GCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAG 77 consensus_9539#1 T-GCCAAACTA--CGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAA 385 ** * * *** ** * * ** * ** * * consensus_9539#0 C-CGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCA 838 consensus_9539#2 C-CGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCA 136 consensus_9539#1 AACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCA 445 *** * * * * * ** * * * * * ** ** * ** *** consensus_9539#0 GTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCT 898 consensus_9539#2 GTAAAATTCCATT---AATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCT 193 consensus_9539#1 ATTACACTTAGCGA--ATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCG 503 * * * * * * * * * * ** ** * * * *** consensus_9539#0 AACTAATTTAATAAGAT--TATTGA--TCATTTTGATAAACTTTTATAACAACAATTTGG 954 consensus_9539#2 AGCTAATTTAGTAAGAT--TATTGA--TCATTTTAATAAACTTTAATAACA-CAACT--G 246 consensus_9539#1 ATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAG 563 * * ** ** * * ** ** * ** * **** ** *** ** ** * consensus_9539#0 CAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAAA-- 1012 consensus_9539#2 CAGCTTTCGTGGTGTAATATACGAGA-CGTCCTT-TCAGTCGAGG-CGCAAGAGAAA--- 300 consensus_9539#1 CTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGT-AAGGCCTCGTGTATAAGAAAATTCG 622 * * ** ** * ** * ** * * * * * **** ** consensus_9539#0 GACATTTACGTAACC- 1027 consensus_9539#2 GACATTAAACT----- 311 consensus_9539#1 AACGCCATTCTCTCGG 638 ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||