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Anopheles gambiae
cluster # 9539 cluster # 9539       Sequences # 18       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9539#0 length = 1027 sequences # 16  
consensus_9539#1 length = 638 sequences # 1  
consensus_9539#2 length = 311 sequences # 1  

consensusID : consensus_9539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 1027
fasta sequence
                              [AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTA--ACTATTTTTATTTCT-GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG-AGCG-TTGATGACGTCCCCACTCATATCTCAATGATGTCAG-AACGCTTTCATAA-A-CGGAAGCCATATTGAGAGCTGA-TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG-ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC-TCCATTA-TTTTAATACAGC-TGATACAGTA-AA-GGATCGTGGACACTGTGCCAAACCACGCCACGCTG-TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT-AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC-TTTCATCAATTACACTTAGCGAATTGTT-ATCATCTGCTGG-TGGTGCCTGACCCATCTCCATGTTCGAT-GTGATGTACCT-GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG--AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT----CGAAC----GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG---TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAAC-TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAAAGACATTTACGTAACC]

[+] EMBL BX466766             [AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTAGCCCTATNTTTATTTCTGGCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAGAAGCGCTTGATNACGTCCCCACTCATATCTCAATGATGTCAGCAACGCTTTCATAANAGCGGAAGCCATATTGAGAGCTGACTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACCGTCCATTAGTTTTAATACAGCGTGATACAGTACAACGGATCGTGGACACTGTGCCAAACCACGCCACGCTGCTGGAAATAAGCTGTCCCCTCCTTTTACGAACTATTGAAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTCGTTTCATCAATTACACTTAGCGAATTGTTGATCATCTGCTGGATGGTGCCTGACCCATCTCCATGTTCGATAGTGATGTACCTNNGTTGACATCGAATACGATTGGAAAAACGTT ATACCAGGAAAATTAATCTGTTga                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CNS099GD             [                  tttttttcaTTGTTTATATCACGTA  GCTATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCCCTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCAAAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTGTCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAA                                                                                 ]
[+] EMBL CNS0910B             [                                         TA  AACATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAA CACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAA                ]
[+] EMBL CNS097LS             [                                        cct  ACTATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTTAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCACCGGATGTGCCAAAAGTAGCCAGCCGGGTGTTGGGAA CACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATC                                                                                                                                                        ]
[+] EMBL CNS08E1R             [                                         ga  aaaATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TCCCGCTGGATTCATGCCGCAGATGACGC                                                                                                                                                                                                                                                                                         ]
[-] EMBL CNS0910A             [                                                ATTTTTATTTCT GCGAT AGAAATATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT                                                                                                ]
[+] EMBL CNS09CFV             [                                                 TTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CNS099GC             [                                                         TCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACAAACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCCCTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTGTCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT                                                                                                ]
[+] EMBL CNS09BH4             [                                                               GATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCGCATTAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CNS097LR             [                                                                                TATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCACCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT                                                                                                ]
[-] EMBL CNS08E1Q             [                                                                                                                               G AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT                                                                                                ]
[-] EMBL BX627219             [                                                                                                                                                                                                        GAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCNTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCT                                                                                                                                                           ]
[-] EMBL BX620921             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTCTCCAAGGGCATCGCGTGGTGATTTC TTTCATCAATTACGCATAGCGAATTGTT ATCATCNGCTGG TGGTGCCTGAACCATCTCCATGCTCGAT GTGATGTACCT GGTTGACATGGAATCCGATTGGAAAAACGTTAATNCCAG  AAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAACGAANGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTNTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTTTTGCAGGACTGCAG TGGATTCATGCCGCGGATGACGCCTTTACCCGCCGGATGTGCCACAAGCCGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAGCGTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACAACAACTTGGCAGCTTT                                                                  ]
[-] EMBL CNS09CFU             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ttTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG  AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT    CGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG   TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT                                                                                                ]
[-] EMBL AL933375             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAACGTTAATACCAG  AAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGAAC    GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTTTTGCAGGACTGCAG TGGATTCATGCCGCGGATGACGCCTTTACCCGCCGGATGTGCCACAAGCCGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAGC TAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACAACAACTTGGCAGCTTTCGTGGTGTAATATACGAAAACGTCCTTGTCACTCGAGGGCGCNAGAGAAAAGACATTTACGTAACC]
[-] EMBL CNS09BH3             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCC                                         ]


>consensus_9539#0 AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTAACTATTTTTATTTCTGC GATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGA TCGAGAGCGTTGATGACGTCCCCACTCATATCTCAATGATGTCAGAACGCTTTCATAAAC GGAAGCCATATTGAGAGCTGATGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCAC AGAAGGGCAGAATATCCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTC CATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACCACGCCAC GCTGTGGAAATAAGCTGTCCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAA AGCTTATCACAGGGTATCGCGTTGTGATTTCTTTCATCAATTACACTTAGCGAATTGTTA TCATCTGCTGGTGGTGCCTGACCCATCTCCATGTTCGATGTGATGTACCTGGTTGACATC GAATCCGATTGGAAAAACGTTAATACCAGAAATTAATCTGTTTAGGTAGCGTCCCTCCTA GTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAA TAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAGTG CCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGC CGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGT AAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAA CTAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTT TCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAAAGACATTTA CGTAACC



consensusID : consensus_9539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence
                              [AACTGTTTCAATGTTTTTAATACATTGACAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAAGGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTAGATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACTACGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCAATTACACTTAGCGAATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCGATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTCGG]

[-] EMBL BM623686             [AACTGTTTCAATGTTTTTAATACATTGACAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAAGGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTAGATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACTACGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCAATTACACTTAGCGAATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCGATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTCGG]


>consensus_9539#1 AACTGTTTCAATGTTTTTAATACATTGACAATGTATTTATTTTTAATTAGAAAACTTTCC TTGAAAAGGACGATGGAAAAAACCGCAAGGTTGCCGACCGCTTGCACTAGGGTTTCTATG CTTCTAGGATAAATAATACGAATTTTTAGATACCTCTCACAAACGGACTCAATATTGAAA GCTGTTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCGCAGAAGGGCAGAATGAC CGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTCCATTATTTTAATACAG CTGATACAGTAAAGGATCGTGGACACTGTGCCAAACTACGCCACACTGTGGAAATAAGCT GACCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTA TCGCGTTGTGATTTCTTTTTCATCAATTACACTTAGCGAATTGTAATCATCTGCTGGTGG TGCCTGACCCATCTCCATGCTCGATGTGATGTACCTGGTTGACATGGAATCCGATTGGAA AAACGTTAATACCAGAAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGTAAG GCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTCGG



consensusID : consensus_9539#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence
                              [ATGTACCTTTAGGCAGTGCGCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAGCCGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTAATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCTAGCTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACACAACTGCAGCTTTCGTGGTGTAATATACGAGACGTCCTTTCAGTCGAGGCGCAAGAGAAAGACATTAAACT]

[-] EMBL AL933439             [ATGTACCTTTAGGCAGTGCGCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAGCCGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTAATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCTAGCTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACACAACTGCAGCTTTCGTGGTGTAATATACGAGACGTCCTTTCAGTCGAGGCGCAAGAGAAAGACATTAAACT]


>consensus_9539#2 ATGTACCTTTAGGCAGTGCGCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGAT GTGCCACAAGCCGCCAGCCGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTG GAGCTCATATTTTTCAGTAAAATTCCATTAATACACACGCAACCAGCTATCGCCTGGTTT TTAACGTTACTCTAGCTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACA CAACTGCAGCTTTCGTGGTGTAATATACGAGACGTCCTTTCAGTCGAGGCGCAAGAGAAA GACATTAAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9539#0      AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTAACTATTTTTATTTCTGC 60
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      ------------------------------------------------------------
                                                                                  

consensus_9539#0      GATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGA 120
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      ------------------------------------------------------------
                                                                                  

consensus_9539#0      TCGAGAGCGTTGATGACGTCCCCACTCATATCTCAATGATGTCAGAACGCTTTCATAAAC 180
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      ------------------------------------------------------------
                                                                                  

consensus_9539#0      GGAAGCCATATTGAGAGCTGATGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCAC 240
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      ------------------------------------------------------------
                                                                                  

consensus_9539#0      AGAAGGGCAGAATATCCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTC 300
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      ------------------------------------------------------------
                                                                                  

consensus_9539#0      CATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACCACGCCAC 360
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      ------------------------------------------------------------
                                                                                  

consensus_9539#0      GCTGTGGAAATAAGCTGTCCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAA 420
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      --------------------------------AACTGTTTCAATGTTTTTAATACATTGA 28
                                                                                  

consensus_9539#0      AGCTTATCACAGGGTATCGCGTTGTGATTTCTTTCATCAATTACACTTAGCGAATTGTTA 480
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      CAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAA 88
                                                                                  

consensus_9539#0      TCATCTGCTGGTGGTGCCTGACCCATCTCCATGTTCGATGTGATGTACCTGGTTGACATC 540
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      GGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTA 148
                                                                                  

consensus_9539#0      GAATCCGATTGGAAAAACGTTAATACCAGAAATTAATCTGTTTAGGTAGCGTCCCTCCTA 600
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      GATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTA 208
                                                                                  

consensus_9539#0      GTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAA 660
consensus_9539#2      ------------------------------------------------------------
consensus_9539#1      GCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATG 268
                                                                                  

consensus_9539#0      TAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAGTG 720
consensus_9539#2      ------------------------------------------ATGTACCTTTAGGCAGTG 18
consensus_9539#1      ATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTG 328
                                                                *          * ** **

consensus_9539#0      CCGCTGGATTCAT-GCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAG 779
consensus_9539#2      C-GCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAG 77
consensus_9539#1      T-GCCAAACTA--CGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAA 385
                        **   * *    *** **         *   *   **     *   ** *      * 

consensus_9539#0      C-CGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCA 838
consensus_9539#2      C-CGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCA 136
consensus_9539#1      AACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCA 445
                        *** *   *  *   *      * **  *   *  * * *  **  ** * **  ***

consensus_9539#0      GTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCT 898
consensus_9539#2      GTAAAATTCCATT---AATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCT 193
consensus_9539#1      ATTACACTTAGCGA--ATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCG 503
                       * * * *        * *  *  *       * *   ** **     *  *  * *** 

consensus_9539#0      AACTAATTTAATAAGAT--TATTGA--TCATTTTGATAAACTTTTATAACAACAATTTGG 954
consensus_9539#2      AGCTAATTTAGTAAGAT--TATTGA--TCATTTTAATAAACTTTAATAACA-CAACT--G 246
consensus_9539#1      ATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAG 563
                      *  * ** **    * *   ** **   *  **  * **** ** *** **  **    *

consensus_9539#0      CAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAAA-- 1012
consensus_9539#2      CAGCTTTCGTGGTGTAATATACGAGA-CGTCCTT-TCAGTCGAGG-CGCAAGAGAAA--- 300
consensus_9539#1      CTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGT-AAGGCCTCGTGTATAAGAAAATTCG 622
                      * * **  ** * **          * **  * *    * *  *     **** **    

consensus_9539#0      GACATTTACGTAACC- 1027
consensus_9539#2      GACATTAAACT----- 311
consensus_9539#1      AACGCCATTCTCTCGG 638
                       **       *     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)