These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence [AAGGCAGAATCCGCACGATGTTAACAATACATCATTACAANCATGAATCAAAAATATCATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCTTGATATGCTTAAGCAAGGTAAAAGCTACGCTGCCGTGGGTCGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAATAGAGCCATCATAACGATGGAAGCAGAATTAGTTTCATGGATAAAGGACTGCAGGCAAAAACATGTTCCGCTAACTACCAACGTAATTTGTAGCAAAGCAAAAAACGATTTTCCAAAAATTATCTGATAGTATTAGAACCGTGACAGACACAACAGCATCGCGCCCGGCCAGGTTCAATGCTAGCAATGGATGGTACGAGAAGTTCCAGAAACGACACGGATTGCGGAGTATTCTATACGGAGAGCCAAGCCTCTTCCCCATACAATTANNACTTCAATGGCGAACACGGACACACACTGGATNGCGGAAATTGGAATTCCCCTTTAACCGGGCCAAGGAAGGCAGGTCCCAGGGAGCAAAAGAACAGAACCAATGTGGTCGCCTNTCNANANGGAANAGCCGGGTTTACNGAAAGANGGNAGTTAGTGAACGGG] [+] EMBL BX468258 [AAGGCAGAATCCGCACGATGTTAACAATACATCATTACAANCATGAATCAAAAATATCATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCTTGATATGCTTAAGCAAGGTAAAAGCTACGCTGCCGTGGGTCGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAATAGAGCCATCATAACGATGGAAGCAGAATTAGTTTCATGGATAAAGGACTGCAGGCAAAAACATGTTCCGCTAACTACCAACGTAATTTGTAGCAAAGCAAAAAACGATTTTCCAAAAATTATCTGATAGTATTAGAACCGTGACAGACACAACAGCATCGCGCCCGGCCAGGTTCAATGCTAGCAATGGATGGTACGAGAAGTTCCAGAAACGACACGGATTGCGGAGTATTCTATACGGAGAGCCAAGCCTCTTCCCCATACAATTANNACTTCAATGGCGAACACGGACACACACTGGATNGCGGAAATTGGAATTCCCCTTTAACCGGGCCAAGGAAGGCAGGTCCCAGGGAGCAAAAGAACAGAACCAATGTGGTCGCCTNTCNANANGGAANAGCCGGGTTTACNGAAAGANGGNAGTTAGTGAACGGG] consensusID : consensus_968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CAAGAATCGCCACGAGGGTNACAAACATGAATCAAAAATATCNATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCCAAAGGAACAATGTTTACAATAGCTGAAAAAATTAAACTTCTCGATATGCTTAAGCACAGGTAAAAGCTACGCTGCCGTGGGTTGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAAGTAGAGCCATCATAACGATGGAAGCAGAAGTTAGTTTCATGGACTAAAGGACTGCAGGCAACAAACATGTTCCGCTAACTACCAAGCGTAATTTGTAGCAAGAGCAAAAACGATTTTCCAANAAAGTTATCTGATAGTATTAGAACCGTGACAGGACACAAGCAGCATCGCGCCCGGCCAGGTTCAAGTGCTAGGCANTGG] [+] EMBL BX469263 [CAAGAATCGCCACGAGGGTNACAAACATGAATCAAAAATATCNATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCCAAAGGAACAATGTTTACAATAGCTGAAAAAATTAAACTTCTCGATATGCTTAAGCACAGGTAAAAGCTACGCTGCCGTGGGTTGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAAGTAGAGCCATCATAACGATGGAAGCAGAAGTTAGTTTCATGGACTAAAGGACTGCAGGCAACAAACATGTTCCGCTAACTACCAAGCGTAATTTGTAGCAAGAGCAAAAACGATTTTCCAANAAAGTTATCTGATAGTATTAGAACCGTGACAGGACACAAGCAGCATCGCGCCCGGCCAGGTTCAAGTGCTAGGCANTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_968#0 AAGGCAGAATCCGCACGATGTTAACAATACATCATTACAANCATGAATCAAAAATATCA- 59 consensus_968#1 ---------------CAAGAATCGCCACG-AGGGTNACAAACATGAATCAAAAATATCNA 44 * * * * * * * **** ***************** consensus_968#0 TCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTT 119 consensus_968#1 TCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTT 104 ************************************************************ consensus_968#0 AATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCAT 179 consensus_968#1 AATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCAT 164 ************************************************************ consensus_968#0 CGCGCTAGCGAGAAGCCCAAATGC------------------------------------ 203 consensus_968#1 CGCGCTAGCGAGAAGCCCAAATGCCAAAGGAACAATGTTTACAATAGCTGAAAAAATTAA 224 ************************ consensus_968#0 -----TTGATATGCTTAAGCA-AGGTAAAAGCTACGCTGCCGTGGGTCGGTGCTACGGAA 257 consensus_968#1 ACTTCTCGATATGCTTAAGCACAGGTAAAAGCTACGCTGCCGTGGGTTGGTGCTACGGAA 284 * ************** ************************* ************ consensus_968#0 TCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTG 317 consensus_968#1 TCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTG 344 ************************************************************ consensus_968#0 CAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAA-TAGAGCCATCATA 376 consensus_968#1 CAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAAGTAGAGCCATCATA 404 ********************************************** ************* consensus_968#0 ACGATGGAAGCAGAA-TTAGTTTCATGGA-TAAAGGACTGCAGGCAA-AAACATGTTCCG 433 consensus_968#1 ACGATGGAAGCAGAAGTTAGTTTCATGGACTAAAGGACTGCAGGCAACAAACATGTTCCG 464 *************** ************* ***************** ************ consensus_968#0 CTAACTACCAA-CGTAATTTGTAGCAAAGCAAAAAACGATTTTCCAAAAA--TTATCTGA 490 consensus_968#1 CTAACTACCAAGCGTAATTTGTAGCAAGAGCAAAAACGATTTTCCAANAAAGTTATCTGA 524 *********** *************** **************** ** ******** consensus_968#0 TAGTATTAGAACCGTGACAG-ACACAA-CAGCATCGCGCCCGGCCAGGTTCAA-TGCTAG 547 consensus_968#1 TAGTATTAGAACCGTGACAGGACACAAGCAGCATCGCGCCCGGCCAGGTTCAAGTGCTAG 584 ******************** ****** ************************* ****** consensus_968#0 -CAATGGATGGTACGAGAAGTTCCAGAAACGACACGGATTGCGGAGTATTCTATACGGAG 606 consensus_968#1 GCANTGG----------------------------------------------------- 591 ** *** consensus_968#0 AGCCAAGCCTCTTCCCCATACAATTANNACTTCAATGGCGAACACGGACACACACTGGAT 666 consensus_968#1 ------------------------------------------------------------ consensus_968#0 NGCGGAAATTGGAATTCCCCTTTAACCGGGCCAAGGAAGGCAGGTCCCAGGGAGCAAAAG 726 consensus_968#1 ------------------------------------------------------------ consensus_968#0 AACAGAACCAATGTGGTCGCCTNTCNANANGGAANAGCCGGGTTTACNGAAAGANGGNAG 786 consensus_968#1 ------------------------------------------------------------ consensus_968#0 TTAGTGAACGGG 798 consensus_968#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||