These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1066 fasta sequence [TTGCTCAGGAATATCATATGTTTAGGTGAGAGCGAAATCATACGCATTTTGCG-TGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC-GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT-CGGCGG-CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC-GGTGCCAGCTCGAGC-AGTAGCAATAGTAG-TAACAGCAATGGCAGCAGCAACG-GATCGTTT-CCAATT-CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTCACTAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTGAATTCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT-CTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGGGCGAGAT-CTGCTGATGAGTTCTGTGTAAGGTTGAATTGTGGGTTT-TGTGTGGCGATTGGCGGATGTAAGCAAGCTTGGGTCCG-AAGACCACCAGATTAGC-CTTAAAGAGCAACAGAGAGAGAGCGAGTTTTGAAGCAAGAGATTCTAAATAAA] [+] EMBL CNS08Y5X [TTGCTCAGGAATATCATATGTTTAGGTGAGAGCGAAATCATACGCATTTTGCG TGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC GGTGCCAGCTCGAGC AGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACG GATCGTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTTTTGAGCGCGGAGGAAAATCCACACTACTTCACTAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTGAATTCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT CTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGGGCGAGAT CTGCTGATGAGTTCTGTGTAAGGTTGAATTGTGGGTTT TGTGTGGCGATTGGCGGATGTAAGCA ] [+] EMBL BM628050 [ccGCTCAGGAATATCATATGTTTAGGTGAGAGCGAAATCATACGCATTTTGCG TGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC GGTGCCAGCTCGAGC AGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACG GATCGTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAAC ] [+] EMBL CNS08X9B [ ATGTTTAGGTGAGAGCGAAATCATACGCATTTTGCG TGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGAGAGGAAGAACAGAATAAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCA ATACGGCGGACGCTGGTGGGCCCCACGATCATCAGCTGCTTGG ] [+] EMBL CNS08S8D [ GTGAGAGCGAAATCATACGCATTTTGCG TGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCCAGGTGCCAGCTCGAGC AGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACGAGATCGTTT CCAATT CCGGC ] [+] EMBL CNS0945U [ CGAAATCATACGCATTTTGCGCTGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC GGTGCCAGCTCGAGC AGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACG GATCGTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTCACTAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTGAATTCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT CTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGGGCGAGAT CTGCTGATGAGTTTTTTGTAAGGTTGAATTGTGGGTTT TGTGTGGCGAT ] [+] EMBL BM588531 [ ccgTTTTGCG TGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC GGTGCCAGCTCGAGC AGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACG GATCGTTTCCCAATTCCCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGA ] [+] EMBL CNS08V4M [ TGCACAAAAAGGGT CACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCCAGTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC GGTGCCAGCTCGAGC AGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACG GATCGTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTCACTAAAAATAAGATAAAAAAAAAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTTAATTCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT CTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTACTA ] [+] EMBL BM651317 [ ccgGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC GGTGCCAGCTCGAGC AGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACG GATCGTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTCACTAAAAATAAGATCCTGTACGAGCTGT ] [+] EMBL CNS08VEF [ TTGTTTGTTGCTTCAAAGAACCCCC GTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGAT CGGCGG CGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCC GGTGCCAGCTCGAGCAAGTAGCAATAGTAG TAACAGCAATGGCAGCAGCAACG GATCGTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTCACTAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTGAATTCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT CTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAAAACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGGGCGAGAA CTGCTGATGAGTTCTGTGTAAGGTTGAATTGTGGGTTT TGTGTGGCGATTGGCGGAT ] [-] EMBL CNS0945V [ gagGCCAGCTCGAGC AGTAGCAATAGTAG TTACAGCAATGGCAGCAGCAACG GATCGTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTCACTAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTGAATTCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT CTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGGGCGAGAT CTGCTGATGAGTTCTGTGTAAGGTTGAATTGTGGGTTT TGTGTGGCGATTGGCGGATGTAAGCAAGCTTGGGTCCG AAGACCACCAGATTAGC CTTAAAGAGCAACAGAGAGAGAGCGAGTTTTGAAGCAAGAGATTCTAAATAAA] [-] EMBL CNS08S8E [ AGC AGTAGCAATAGTAGTTATCAGCAATGGCAGCAGCAACG GATCTTTT CCAATT CCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGGGGAAAATCCACACTACTTCACTAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCTACTGCAGTGAATTCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT CTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGGGCGAGAT CTGCTGATGAGTTCTGTGTAAGGTTGAATTGTGGGTTT TGTGTGGCGATTGGCGGATGTAAGCAAGCTTGGGTCCGCAAGACCACCAGATTAGCTCTTAAAGAGCAACAGAGAGAGAGCGAGTTTTGA ] [-] EMBL CNS08SCO [ GCGGAGGAAAATCCAAACTACTTCACTAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTGAAATCCCACCAAAAGAAGGACCATCGTAGGGGTGTTTAATTGCTTAATGCGTTAACTACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGGGCGAGATGCTGCTGATGAGTTCTGTGTAAGGTTGAATTGTGGGTTTGTGTGTGGCGATT ] [-] EMBL CNS08X9C [ CACCAAAAGAAGGACCATCGTAGGGGTGTTTAATT CTTAATGCGTTAACAACAGATTTTCATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTATTTAACATTGATCGG ] consensusID : consensus_9812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 836 fasta sequence [GGCAGAATCGGCACGTAGGCGAAATCATACGCATTTTGCGTGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCCGTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAAT-CAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGATCGGCGGCGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCCGGTGCCAGCTCGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCGTTTCCAATTCCGGCNCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGGCGATTTACTGTCCCGTTGCTGAGCGCGGAGGGAAAAATCCACACTACTTTCACTTAAAAATAAGGATCCCTGTACAGAGCCTTGTACCGTCAGCGGATTAACCCGACCTGCAGTGGAATTCCCAACCAAAAAGAAAGGACCATCCGTAAGGGTTGTTTANTCTTAATGCCGTTTAC] [+] EMBL BX467886 [GGCAGAATCGGCACGTAGGCGAAATCATACGCATTTTGCGTGTGCACAAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCCCCGTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCATCCCTTTCGAGTTAGCATAAAT CAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGATCGGCGGCGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCCGGTGCCAGCTCGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCGTTTCCAATTCCGGCNCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGGCGATTTACTGTCCCGTTGCTGAGCGCGGAGGGAAAAATCCACACTACTTTCACTTAAAAATAAGGATCCCTGTACAGAGCCTTGTACCGTCAGCGGATTAACCCGACCTGCAGTGGAATTCCCAACCAAAAAGAAAGGACCATCCGTAAGGGTTGTTTANTCTTAATGCCGTTTAC] [+] EMBL CNS09GAB [ GTTTGTTGCTTCAAAGATTCCCCGTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTAGTTAGAAAGGTGGTGC ACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATCAT CCTTTCGAGTTAGCATAAATCCAAGATGGCAGGG CCATCGACACTAGGAAACGTTCTCGCGAGGAga ] [-] EMBL CNS08Y5Y [ TCGAGTTAGCATAAAT CAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAAATCGGCGGCGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAA ] consensusID : consensus_9812#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 486 fasta sequence [CCGCCCACGCGTCCGGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAAATCGGCGGCGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCCGGTGCCAGCTCGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCGTTTCCAATTCCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTTCACTAAAAATAAGATCCTGTACG] [+] EMBL BM630267 [CCGCCCACGCGTCCGGGCAGGGCCCATCGACACTAGGAAACGTTCTCGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGATCGGCGGCGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATGGCCGGTGCCAGCTCGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCGTTTCCAATTCCGGCCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGGCGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTTCACTAAAAATAAGATCCTGTACG] [+] EMBL CNS08SCN [ CGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTTAACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAAATCGGCGGCGCTGGTGGGCCCCACGATCATCATCTGCTTGGGGCGGTCGGTTCGTGT ] [-] EMBL CNS08V4N [ GCAAATCGGCGGCGCTGGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCTTGTGGAATGAACATGCACAACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTTATGGGAG ] consensusID : consensus_9812#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [GGCCCCACGAACAACAGCAGCACGGGGCGGTCGGTACGTGTGGAAAGAACAAGCACAACAATCATCATCATCATCATCAACACCACCGGCAACCGCAACACCAGAAGGGAGTCATGGCCGGTGCCAGCACGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCGTTTCCAAATCCGGCCAACAGAGAGAAGCAACAGTCCCGCGTCGACCAAAACAATAAACG] [+] EMBL CNS08XX6 [GGCCCCACGAACAACAGCAGCACGGGGCGGTCGGTACGTGTGGAAAGAACAAGCACAACAATCATCATCATCATCATCAACACCACCGGCAACCGCAACACCAGAAGGGAGTCATGGCCGGTGCCAGCACGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCGTTTCCAAATCCGGCCAACAGAGAGAAGCAACAGTCCCGCGTCGACCAAAACAATAAACG] consensusID : consensus_9812#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 138 fasta sequence [TTCTTGTCTACTTCCTGTTCTGTTTTGCGGCGGGCGTCGTACTGCCGGTGCTGTTCGGCGGCGCTGGTGGGCCCCACGTTCATCTGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGTACATGCACTACAATCATCATC] [-] EMBL CNS08XX7 [TTCTTGTCTACTTCCTGTTCTGTTTTGCGGCGGGCGTCGTACTGCCGGTGCTGTTCGGCGGCGCTGGTGGGCCCCACGTTCATCTGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGTACATGCACTACAATCATCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9812#1 -------------GGCAGAATCGGCACGTAGGCGAAATCATACGCATTTTGCGTGTGCAC 47 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 TTGCTCAGGAATATCATATGTTTAGGTGAGAGCGAAATCATACGCATTTTGCGTGTGCAC 60 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 AAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCC 107 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 AAAAAGGGTCCACTTGCAGAGGATAGTTATTATTCTCTTGTTTGTTGCTTCAAAGATTCC 120 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 CCGTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTA 167 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 CCGTGACGATAGCCGTTTCAGTGGCCACTTTTTCTCGATAAAGAAGAAGCAACGAAACTA 180 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 GTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATC 227 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 GTTAGAAAGGTGGTGCAACGTAGATGAGACGGCAGCAGCAGCATCATCGTCATCATCATC 240 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 ATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCT 287 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 --------------CCGCCCACGCGTCCGGGCAGGGCCCATCGACACTAGGAAACGTTCT 46 consensus_9812#0 ATCCCTTTCGAGTTAGCATAAATCAAGATGGCAGGGCCCATCGACACTAGGAAACGTTCT 300 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 CGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTT 347 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 CGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTT 106 consensus_9812#0 CGCGAGGAAGAACAGAATGAATTTATGCCCCTGTCGAAACGCATCAACAATCTGCATCTT 360 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 AACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGATCGGCGGCGCT 407 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 AACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAAATCGGCGGCGCT 166 consensus_9812#0 AACAACAACCAGAACAGTATTGCGGCAGGCGTCGTACTGCCGGAGCAGATCGGCGGCGCT 420 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 GGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCAC 467 consensus_9812#3 ----GGCCCCACGAACAACAGCAGCACGGGGCGGTCGGTACGTGTGGAAAGAACAAGCAC 56 consensus_9812#2 GGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCAC 226 consensus_9812#0 GGTGGGCCCCACGATCATCAGCTGCTTGGGGCGGTCGGTTCGTGTGGAATGAACATGCAC 480 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 AACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATG 527 consensus_9812#3 AACAATCATCATCATCATCATCAACACCACCGGCAACCGCAACACCAGAAGGGAGTCATG 116 consensus_9812#2 AACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATG 286 consensus_9812#0 AACAATCATCATCATCATCATCATCACCACCTGCATCCGCAACACCTGATGGGAGTTATG 540 consensus_9812#4 -------------------------------TTCTTGTCTACTTCCTGTTCTGTTTTGCG 29 * * ** * * * * consensus_9812#1 GCCGGTGCCAGCTCGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCG 587 consensus_9812#3 GCCGGTGCCAGCACGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCG 176 consensus_9812#2 GCCGGTGCCAGCTCGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCG 346 consensus_9812#0 GCCGGTGCCAGCTCGAGCAGTAGCAATAGTAGTAACAGCAATGGCAGCAGCAACGGATCG 600 consensus_9812#4 GCGGGCGTC-GTACTGCCGGTGCTGTTCG-----GCGGCGCTGGTGGGCCCCACGT-TCA 82 ** ** * * * * * ** * * * ** *** * * *** ** consensus_9812#1 TTTCCAATTCCGGCNCAACAGTGGAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGG 647 consensus_9812#3 TTTCCAAATCCGGCCAACAGAGAGAAGCAACAGTCCCGCGTCGACCAAAACAATAAACG- 235 consensus_9812#2 TTTCCAATTCCGGCCAACAGTG-GAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGG 405 consensus_9812#0 TTTCCAATTCCGGCCAACAGTG-GAAGCAACAGTCCCGCGTCGACCATTTCAATTAACGG 659 consensus_9812#4 TCTGCTGCTTGGGGCGGTCGGTTCGTGTGGAA--TGTACATGCACTACAATCATCATC-- 138 * * * * ** * * * * ** * ** * * consensus_9812#1 CGAAATCCTGGGGCGATTTACTGTCCCGTTGCTGAGCGCGGAGGGAAAAATCCACACTAC 707 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 CGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTTCA 465 consensus_9812#0 CGAAATCCTGGGCGATTACTGTCCCGTGCTGAGCGCGGAGGAAAATCCACACTACTTCAC 719 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 TTTCACTTAAAAATAAGGATCCCTGTACAGAGCCTTGTACCGTCAGCGGATTAACCCGAC 767 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 CTAAAAATAAGATCCTGTACG--------------------------------------- 486 consensus_9812#0 TAAAAATAAGATCCTGTACGAGCTGTACGTCGAGCGGATGAGCCGACTGCAGTGAATTCC 779 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 CTGCAGTGGAATTCCCAACCAAAAAGAAAGGACCATCCGTAAGGGTTGTTTANTCTTAAT 827 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 CACCAAAAGAAGGACCATCGTAGGGGTGTTTAATTCTTAATGCGTTAACTACAGATTTTC 839 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 GCCGTTTAC--------------------------------------------------- 836 consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 ATACTTTTTTTAAAAAATACTTTCTCGAACAAGCTTATTTCTGCTAATTATATTTAGTAT 899 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 ------------------------------------------------------------ consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 TTAACATTGATCGGGCGAGATCTGCTGATGAGTTCTGTGTAAGGTTGAATTGTGGGTTTT 959 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 ------------------------------------------------------------ consensus_9812#3 ------------------------------------------------------------ consensus_9812#2 ------------------------------------------------------------ consensus_9812#0 GTGTGGCGATTGGCGGATGTAAGCAAGCTTGGGTCCGAAGACCACCAGATTAGCCTTAAA 1019 consensus_9812#4 ------------------------------------------------------------ consensus_9812#1 ----------------------------------------------- consensus_9812#3 ----------------------------------------------- consensus_9812#2 ----------------------------------------------- consensus_9812#0 GAGCAACAGAGAGAGAGCGAGTTTTGAAGCAAGAGATTCTAAATAAA 1066 consensus_9812#4 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||