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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1154 fasta sequence
[CCGCGGAGGCGTGAACTCCGCCCGGTGGAAAGTGGTACTGCCTTTTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC-TTT-TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC-GGCTGGGCATCCC-GGACAGTCAGATACTGC-TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC-GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT-TCGTACGACTACTGAC-GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT-TGCTTTCCGACTCGGGAAGTAACGTG-CTGATATACCTGACCGGTCACGGAGGGGATGGA-TTTCTTAAGTT-TCA-AGACTCGGAGGAAATTACAA-ATC-AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT-CCGAACATACTTG-CCGTGG--CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG-TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGACACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATCTGAACAAAACAAACGACAAGAAAATCAATAAAAAAAA]
[+] EMBL BM584590 [CCGCGGACGCGTGGGCT CGTGCGGTGGAAAGTGGTACCGCCGTTTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTGTACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTAGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAATGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTCTCCGACTCAGGAAGTAACGTG CTGATATACCTGACCGGTCATGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACCA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTATAACGAGCTGTTCTTCATGATCGACACTTGCCAAGC ]
[+] EMBL CNS09KHM [ aggtttgttGTGAACTCCGCCCGGTGGAAAGTGGTACTGCCTTTTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCAC GAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAA GATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGT AACGTGA ]
[+] EMBL AL931061 [ gccccgagGTTAACTCCGCCCGGTGGAAAGTGGTACTG CGTTTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTNGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGCATTTATGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTGTACCGTTCCGTGAAGCTGGCTGGGCATCCCTGGACAGTCAGATACTGCGTCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTCTGGATGTCGAGGTAGACTACCGGGGCTACGAGGTGACGGTGGACAATTATCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGATATGCTCTCCGACTCGGGAAGTAACGTGTTTGATATACCTGACCGGTCACGGAGGGGATGGA TAACTTAAGTTATCACAGACTCGGAGGAAATTACAACATCNCGGANTTGGCTGAT ]
[+] EMBL CNS090B1 [ CGCCCGGTGGAAAGTGGTACTGCCTTTTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACATAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTA ]
[+] EMBL CNS08SDP [ GCCCGGTGGAAAGTGGTACTGCCTTTTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTCCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCAC GAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAA GATCCCTACAAAGTTCCTA ]
[+] EMBL BM637075 [ CCGGGTTTAAAGTGGTACCGCCGTTTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGTTTTGCTCGCTTCTTCAAACGAAATAGAGC ]
[+] EMBL CNS09R44 [ CTGCCTATTGCGCAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCAC GAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAGTTTTTTGGAGCGCGTTGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATt ]
[+] EMBL CNS09HR9 [ ATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCAC GAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGAATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTAAACGTGACACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAAT ]
[+] EMBL CNS08MNM [ TGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAA GATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTA TAAACGCGACACTGTCAACCATTCCAGAAGTATTGTCATC ]
[+] EMBL CNS08D9Z [ GTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCAC GAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGG ]
[+] EMBL CNS08EF5 [ GGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGACGGGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGATTTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTC ]
[-] EMBL CNS08MNN [ CTGGGCAGTGCTGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGGTATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAAAACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGGACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGCGAAACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCA ]
[-] EMBL CNS09KHN [ TGGTTGATACGTCCCGC TTT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGTTATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGACACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATCTG ]
[-] EMBL CNS09HRA [ TT TGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGC GGCTGGGCATCCC GGACAGTCAGATACTGC TCATGGTGGCGGACGTTATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAAAACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGGACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGAAACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCCGCGATCCTTGTTTGGGCCAGTAGCAAATAAAATCTGAACAAAACAAACGA ]
[-] EMBL CNS090B2 [ GCCAGCCACAG TTTCAACAATGCAAAACAACACATCAACGTGTACGGGTC GGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACGACTACTGAC GGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGAT TGCTTTCCCACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCT CCGCACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGACACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATCTGAACAAAACAATAGACAAGAAAAT ]
[-] EMBL CNS08KRJ [ TC GGTTTTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATT TCGTACAACTACTGAC GGGCCGAAACGAAAACGGGACTGCCCGTTCGAAGCGAT TGCTTTCCCACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AAACTCGGAGGAAATTACAA ATC AGGAGTTGGCTAATGCGATCGGGCAGATGTGGCAGAAGCAACGGTAC ]
[-] EMBL CNS08SDQ [ CGAGGTGACGGTGGAAAATT TCGTACGACAACTGAC GGGCCGAAACGAAAACGGAACTGCCCGTTCGAAGCGAT TGCTTTCCGACTCGGGAAGTAACGTG CTGATATACCTGACCGGTCACGGAGGGGATGGA TTTCTTAAGTT TCA AGACTCGGAGGAAATTACAA ATC AGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGGGAAGTTCTACTCT CCGAACATACTTG CCGTGG CCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATAACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGACACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATC ]
[-] EMBL CNS08EF6 [ TACTCTCCCGAACATACTTGCCCGTGGGCCCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCAATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAG TTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGACACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGG ]
[-] EMBL CNS09R45 [ GTCGCATAACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTAAACGTACAATGAACTCGAG TTTTTGGAGCGCGTGGAGTGGGACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCCACAGAGATTTCATCCGACGTAGTCAACGTGAAACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATCTGAACAAAACAAACGACAAGAAAATCAATAAAAAAAA]
[-] EMBL CNS08DA0 [ CGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGACACTGTCAACCATTCCAGAAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTT ]
consensusID : consensus_9852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence
[CTTTAAAAAACAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGCTTTTGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGCGCTGGGCATCCCGGACAGTCAGATACTGCTCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTCGGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATTTCGTACGACAATTGACGGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGATTGCTTTCCGACTCGGGAAGTAACGTGCTGATATACCTGACCGGTCACGAGGGGATGGATTTCTTAAGTTTCAAGACTCGGAGGAAAATTACAAATCAGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCTCCGAACATACTTGCCGTGGCCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAGTTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGTTAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTATAAACGTGACAC]
[+] EMBL CNS08KRI [CTTTAAAAAACAAAGAATGTGGCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGAGCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGATACGTCCCGCTTTTGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTCCGTGAAGCGCTGGGCATCCCGGACAGTCAGATACTGCTCATGGTGGCGGACGATATGGCGTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAACGTGTACGGGTCGGATGTCGAGGTGGACTACCGGGGCTACGAGGTGACGGTGGAAAATTTCGTACGACAATTGACGGGCCGAAACGAAAACGGCACTGCCCGTTCGAAGCGATTGCTTTCCGACTCGGGAAGTAACGTGCTGATATACCTGACCGGTCACGAGGGGATGGATTTCTTAAGTTTCAAGACTCGGAGGAAAATTACAAATCAGGAGTTGGCTGATGCGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTTGCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCTCCGAACATACTTGCCGTGGCCAGCAGTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTATCGACCGCTACACGTACAATGCACTCGAGTTTTTGGAGCGCGTGGAGTGGAACAGCAAGAAGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGTTAGCGTGCATCTCGACGGTGGGTGTAAGGAAGGATCTTTACCCGAAGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTTCCATTCGTCCGACAGAGATTTCATCCGACGTATAAACGTGACAC]
consensusID : consensus_9852#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[TCTATATTTCTTTAGGTCATCGCCAAATCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATCTGAACAAAACAAACGACAAGAAAATCAACTACTCTTTGTGGCCATTACTTCACGCTTTTCCATCGCTGATTCGAATCGTTCCGGACTTGTACTCCGTTAGCAATGAGTTTTCGGCATCGCCAAGTTTCTTCAGACCCGCGATGAATTGCTGATTTTCCAAATTATCATCACACAGGTTGTGTATTGCCAGAATGCTCCATTCCTTTATAAGCGGATTGCGAGCGTCCAGGTTGGTGCATTCAAGAATAGCCGCAATGATGTCCATCTCTCGGGCAAGTTTCTGATTTTTCTTCGACCGGACGCGTGGGCGG]
[-] EMBL BM602057 [TCTATATTTCTTTAGGTCATCGCCAAATCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGTTTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATCTGAACAAAACAAACGACAAGAAAATCAACTACTCTTTGTGGCCATTACTTCACGCTTTTCCATCGCTGATTCGAATCGTTCCGGACTTGTACTCCGTTAGCAATGAGTTTTCGGCATCGCCAAGTTTCTTCAGACCCGCGATGAATTGCTGATTTTCCAAATTATCATCACACAGGTTGTGTATTGCCAGAATGCTCCATTCCTTTATAAGCGGATTGCGAGCGTCCAGGTTGGTGCATTCAAGAATAGCCGCAATGATGTCCATCTCTCGGGCAAGTTTCTGATTTTTCTTCGACCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9852#0 CCGCGGAGGCGTGAACTCCGCCCGGTGGAAAGTGGTACTGCCTTTTGCGCAAAGAATGTG 60
consensus_9852#1 ---------------------------------------CTTTAAAAAACAAAGAATGTG 21
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 GCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGA 120
consensus_9852#1 GCTTCTTCATGGATTTCTGGTCATTAGTTGGGGTTTGCTCGCTTCTTCAAACGAAATAGA 81
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 GCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGA 180
consensus_9852#1 GCTACCCGCCAAGTTTGTTACCAGCAGTTCGCACACAAACAACTGGGCAGTGCTGGTTGA 141
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 TACGTCCCGCTTTTGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTC 240
consensus_9852#1 TACGTCCCGCTTTTGGTTCAACTATCGACATATTGCAAATGTTCTCTCCGTATACCGTTC 201
consensus_9852#2 ----------------------------------------------TCTATATTTCTTTA 14
** *** * **
consensus_9852#0 CGTGAAGCGGCTGGGCATCCCGGACAGTCAGATACTGCTCATGGTGGCGGACGATATGGC 300
consensus_9852#1 CGTGAAGCG-CTGGGCATCCCGGACAGTCAGATACTGCTCATGGTGGCGGACGATATGGC 260
consensus_9852#2 GGTCAT-CGCCAAATCCAATCAGCAAACCAAAT---GCTCA-ACTGTTTTACGA-ACAGT 68
** * ** * * * * * ** ** ***** ** **** * *
consensus_9852#0 GTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAA 360
consensus_9852#1 GTGCAATGCGCGCAATCCACGGCCAGCCACAGTTTTCAACAATGCAAAACAACACATCAA 320
consensus_9852#2 TTCCAAC-CAAACTGTTT-CAGCGATCC-TAGTTTGGGCCAGTAGCAAATAAAATCTGAA 125
* *** * * * * ** * ** ***** ** * *** ** * * **
consensus_9852#0 CGTGTACGGGTCGGATGTCGAGGTGGACTACC----GGGGCTACGAGGTGACGGTGGAAA 416
consensus_9852#1 CGTGTACGGGTCGGATGTCGAGGTGGACTACC----GGGGCTACGAGGTGACGGTGGAAA 376
consensus_9852#2 CAAA-ACAAAC--GACAAGAAAATCAACTACTCTTTGTGGCCATTACTTCACGCTTTTCC 182
* ** ** * * ***** * *** * * * *** *
consensus_9852#0 ATTTC--GTACGACTACTGACGGGCCGAAACGAAAACGGCACTGCCCGTTCGAAG----C 470
consensus_9852#1 ATTTC--GTACGACAATTGACGGGCCGAAACGAAAACGGCACTGCCCGTTCGAAG----C 430
consensus_9852#2 ATCGCTGATTCGAATCGTTCCGGACTTGTACTCCGTTAGCAATGAGTTTTCGGCATCGCC 242
** * * *** * *** * ** *** ** **** *
consensus_9852#0 GATTGCTTTCCGACTCGGGAAGTAACGTGCTGATATACCTGACCG--GTCACGGAGGGGA 528
consensus_9852#1 GATTGCTTTCCGACTCGGGAAGTAACGTGCTGATATACCTGACCG--GTCACG-AGGGGA 487
consensus_9852#2 AAGTTTCTTCAGACCCGCGA--TGAATTGCTGATTTTCCAAATTATCATCACACAGGTTG 300
* * *** *** ** ** * * ******* * ** * **** ***
consensus_9852#0 TGGATTTCTTAAGT-TTCAAGAC--TCGGAGGAAA-TTACAAATCAGGAGTTGGCTGATG 584
consensus_9852#1 TGGATTTCTTAAGT-TTCAAGAC--TCGGAGGAAAATTACAAATCAGGAGTTGGCTGATG 544
consensus_9852#2 TGTATTGCCAGAATGCTCCATTCCTTTATAAGCGGATTGCGAGC---GTCCAGGTTGGTG 357
** *** * * * ** * * * * * ** * * * ** ** **
consensus_9852#0 CGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTT 644
consensus_9852#1 CGATCGAGCAGATGTGGCAGAAGCAACGGTACAACGAGCTGTTCTTCATGATCGACACTT 604
consensus_9852#2 CATTCAAGAATA-GCCGCAATGATGTCCATCTCTCGGGCAAGTTTC--TGATTTTTCTTC 414
* ** ** * * * *** * * ** ** * * **** *
consensus_9852#0 GCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCTCCGAACATACTTGCCGTGGCCAGCA 704
consensus_9852#1 GCCAAGCCGCCTCAATGTATGAAAAGTTCTACTCTCCGAACATACTTGCCGTGGCCAGCA 664
consensus_9852#2 GACCGGACGCGTGGGCGG------------------------------------------ 432
* * * *** * *
consensus_9852#0 GTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTA 764
consensus_9852#1 GTTTGGTGGGAGAGGATTCATTGTCGCATCACATCGATCCGGCCATCGGTGTGTACATTA 724
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 TCGACCGCTACACGTACAATGCACTCGAGTTTTTGGAGCGCGTGGAGTGGAACAGCAAGA 824
consensus_9852#1 TCGACCGCTACACGTACAATGCACTCGAGTTTTTGGAGCGCGTGGAGTGGAACAGCAAGA 784
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 AGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGCGAGCGTGCATCTCGACGGTGGGTG 884
consensus_9852#1 AGACAATGGGCGATTTTCTTTCCGTTTGTCCTAAGTTAGCGTGCATCTCGACGGTGGGTG 844
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 TAAGGAAGGATCTTTACCCGAAGGATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTT 944
consensus_9852#1 TAAGGAAGGATCTTTACCCGAAG-ATCCCTACAAAGTTCCTATAACGGATTTCTTCGGTT 903
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 CCATTCGTCCGACAGAGATTTCATCCGACGTAGTCAACGTGACACTGTCAACCATTCCAG 1004
consensus_9852#1 CCATTCGTCCGACAGAGATTTCATCCGACGTA-TAAACGTGACAC--------------- 947
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 AAGTATTGTCATCGCCAAAGCCAATCAGCAAACCAAATGCTCAACTGTTTTACGAACAGT 1064
consensus_9852#1 ------------------------------------------------------------
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 TTCCAACCAAACTGTTTCAGCGATCCTAGTTTGGGCCAGTAGCAAATAAAATCTGAACAA 1124
consensus_9852#1 ------------------------------------------------------------
consensus_9852#2 ------------------------------------------------------------
consensus_9852#0 AACAAACGACAAGAAAATCAATAAAAAAAA 1154
consensus_9852#1 ------------------------------
consensus_9852#2 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||