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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 953 fasta sequence
[CAGAATCCCCCGAGGTTNTTAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTTTACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACCCACAGCGAAAGCGTATTATCCTGCGCGTGCCGAA-AGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGA-CTTTGCCGGTCAAACCGTTGCTTG-AATCATGTCGCTGTGCAAAAGCTAC-GGCAAGGATAAGGTAATCTTTGCCACCGCCGAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTNCCGGGAAGCATTCTCTTGCTTTCACTACAAGGCAAGCACAGCCGAAGGGTTCGGATTGNTACGAAGCGTTCAGCACCAATGAACGAATGCATGCGTAAACTATACCTGGGTGTGTTACACAACAAAACCTCAAACGAGGGACCGAGGAATGAGGAGAGTGGTGCCGGTGGTGGACGAGCNNATGATAAGCGNNACGAAAGGCGAGCAGGANGATGANTGTCCCAATGCGCCATCCTACAGGGGAAACGGCGGACAANAGCAGAACTTCAAAAAACTNGTAAGACTGAACAAANANGCGAACCTNAAGGTCGTACTTAAGGCGGAACCAACAATTAAATATAACGCCAGANGAGTACGTAGTNACCAGGTGTGCAAAAACACACAAAAACAAAAAAACAAGGGGTTG]
[+] EMBL AL693853 [CAGAATCCCCCGAGGTTNTTAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTTTACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACCCACAGCGAAAGCGTATTATCCTGCGCGTGCCGAAGAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTG TGCTCTCGTTGGTGGAAACGCACGTAGACCTTTGCCGGTCAAACCGTTGCTTGAAATCATGTCGCTGTGCAAAAGCTACGGGCAAGGATAGGGTAATCTTTG CACCGCCGAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCG GA CGGCACTGATACTGGAAAATGGAGACATCCAATGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTNCCGGGAAGCATTCTCTTGCTTTCACTACAAGGCAAGCACAGCCGAAGGGTTCGGATTGNTACGAAGCGTTCAGCACCAATGAACGAATGCATGCGTAAACTATACCTGGGTGTGTTACACAACAAAACCTCAAACGAGGGACCGAGGAATGAGGAGAGTGGTGCCGGTGGTGGACGAGCNNATGATAAGCGNNACGAAAGGCGAGCAGGANGATGANTGTCCCAATGCGCCATCCTACAGGGGAAACGGCGGACAANAGCAGAACTTCAAAAAACTNGTAAGACTGAACAAANANGCGAACCTNAAGGTCGTACTTAAGGCGGAACCAACAATTAAATATAACGCCAGANGAGTACGTAGTNACCAGGTGTGCAAAAACACACAAAAACAAAAAAACAAGGGGTTG]
[+] EMBL BM619056 [ ccgCTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTGGATTTGCTGAAATTTGACGCACAGCGAAAGCGTATTATCCTGCGCGTGCCGAA AGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGA CTTTGCCGGTCAAACCGTTGCTTG AATCATGTCGCTGTGCAAAAGCTAC GGCAAGGATAAGGTAATCTTTGCCACCGCCGAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCC ]
[+] EMBL BX622775 [ GTCCGCACTTTACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACCCACAGCGAAAGCGTATTATCCTGCGCGTGCCGAA AGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGA CTTTGCCGGTCAAACCGTTGCTTG AATCATGTCGCTGTGCAAAAGCTAC GGCAAGGATAAGGTAATCTTTGCCACCGCCGAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTTCACTAC AGCCAAGCACAGCCGAAGGGTTCGGATTGCTACGAAGCGTTCAGCA CAATGAACGAATGCATGCGT AACTAT CCT GGTGT ]
consensusID : consensus_9868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 948 fasta sequence
[CACAACATACAAAACATAC-TGGATAACAAAAAAAAACGCATTATTT-TCTCGCCGCTCAAGCATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCGTGATTATCCTGCGCGTGCCGAAAG-AATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGCAAAAGCTACGGCAAGGATAAGGTGATTTTTGCTACCG-CCGAGGATCATGCCATGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAGCCGAAGG-TTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGTGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGCATGATAGCCGACGAAGGCGAGGGAAGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATTAAAAACCGTGGCGACAAAAGCGAACTAAGTTGTATAAGCGAGCAAACAATAATATACGCCAGAAAGTAGTGTTACAGCTGTTTAAAAAAAAAAAAAAAAGGCCACATG]
[+] EMBL CNS097GH [CACAACATACAAAACATGCTTTTATAACAAAAAAAAACGCATTATTT TCTCGCCGCTCAAGCATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTGGATTTGCTGAAATTTGACGCACAGCGAAAGCGTTATTATCCTGCGCGTGCCGAAAG AATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTTGCTTGAATCATGTCGCTGTGCAAAAGCTACGGCAAGGATAAGGTAATCTTTGCCACCG CCGAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCCTGCTTCCACTACAGCCAAGCACATCCGAAGG TTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGTGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGTATGATAGCCGACGAAGGCGAGGGAGGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATTAAAAACCGTGGCGACAAAAGCGAACTAAGTTGTATAAGCGAGCAAACAATAATATACGCCAGAAAGTAGTGTTACAGCTGTTTAAAAAAAAAAAAAAAAGGCCACATG]
[+] EMBL CNS09PD4 [ cTAC TGGATAACAAAAAAAAACGCATTATTT TCTCGCCGCTCAAGCATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCGTGATTATCCTGCGCGTGCCGAAAG AATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGCAAAAGCTACGGCAAGGATAAGGTGATTTTTGCTACCGCCCGAGGATCATGCCATGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAGCCGAAGGTTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGTGTGTACAAACAAAACCTCAA ]
[+] EMBL CNS09E1B [ AC TGGATAA AAAAAAAAACGCATTATTT TCTCGCCGCTCAAGCATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTGGATTTGCTGAAATTTGACGCACAGCGAAAGCGTTATTATCCTGCGCGTGCCGAAAG AATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTTCCGGTCAA CGTTGCTTGAATCATGTCGCTGTGCAAAAACTACGGCAAGGATAAGG ]
[+] EMBL CNS0936I [ gATTATTTATCTCGCCGCTCAAGCATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCGTGATTATCCTGCGCGTGCCGAAAG AATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGCAAAAGCTACGGCAAGGATAAGGTGATTTTTGCTACCG CCGAGGATCATGCCATGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAGCCGAAGG TTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGTGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGCATGATAGCCGACGAAGGCGAGGGAAGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATCAAAAACTGTAGCGACAAAAGCGAACTAAGTTGTATAAGCGAACAAACAATAATATACGCGAGAGAGTA ]
[+] EMBL CNS09PXW [ GCTCAAGCATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCAC ]
[+] EMBL CNS09625 [ CAAGCATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCGTGATTATCCTGCGCGTGCCGAAAGAAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGCAAAAGCTACGGCAAGGATAAGGTGATTTTTGCTACCG CCGAGGATCATGCCATGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAGCCGAAGG TTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGTGTGTACAAACAAAACCTCAACGAGAACGAGGATGAGGAGAGTGGTGCAGATGTAACGAGCATGATAGCCGACAAAGGCGA GGCAGAGGATGCTGTCGATACGCCT ]
[-] EMBL CNS09626 [ GCTACCGGAATCGGAACCCCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGGACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTTTCTTGCTTCCAC ]
consensusID : consensus_9868#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 915 fasta sequence
[GGCTCAGGCAAGAA-CGCTCAAGCAT-GGTT-CTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCG-TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC-GGCAAGGATAAGGTGATTTTTGCTACCGCC-GAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAACCG-AAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGCGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGCATGATAGCCGACGAAGGCGAG-GAAGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATCAAAAACTGTAGCGACAAAAGCGAACTAAGTTGTATAAGCGAACAAACAATAATATACGCCAGAGAGTAGTGTTA-CAGCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BX468537 [GGCTCAGGCAAGAATCNGGCACG ATGGGGT CTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCG TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC GGCAAGGATAAGGTGATTTTTGCTACCGCC GAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCG ]
[-] EMBL CNS097GI [ CGCTAAAGCAT GGTT CTACTATGAGTAACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGGAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAACGATGGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTGGATTTGCTGAAATTTTACGCACAGCGAAAGCG TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAAGTCCGGGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTTGCTTTAATCATGTCGCTGTGCAAAAGCTAC GGCAAGGATAAGGTAATCTTTGCCACCGCC GAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGGACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCCTGCTTCCACTACAGCCAAGGACATCCG AAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGTGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGTATGATAGCCGACGAAGGCGAG GAGGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATCAAAAACCGTGGCGACAAAAGCGAACTTAGTTGTATAAGCGAGCAAACAATTATATACGCCAGAGAG ]
[+] EMBL BX626968 [ tttctcgc CGCTCAAGNNT GGTT CTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCG TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC GGCAAGGATAAGGTGATTTTTGCTACCGCC GAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAACCG AANGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACT ]
[+] EMBL CNS09AZH [ CAAGCAT GGTTGCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCGTTATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC GGCAAGGATAAGGTGATTTTTGCTACCGCCGGAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAACCG AAGGTATCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGCGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGCATGATAGCCGACGAAGGCGAGAGAAGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATCAAAAACTGTAGCGACAAAAGCGAACTAAGTTGTATAAGCGAACAAACAATAATATACGCCAGAAAGTAGTGTTA CAGCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BX619992 [ AGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCG TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC GGCAAGGATAAGGTGATTTTTGCTACCGCC GAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAACCG AAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGCGTGTACAAACAAAACCTCAACGAGGACCANGATGANGAGAGTGGTGCCGGTGTGGCGAGCAT ]
[+] EMBL BM636552 [ ccgCTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCG TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC GGCAAGGATAAGGTGATTTTTGCTACCGCC GAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAACCGAAAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGC ]
[+] EMBL BX616195 [ TGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAGCG TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC GGCAAGGATAAGGTGATTTTTGCTACCGCC GAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAACCG AAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGCGTGTACAAACAAAACCTCA ]
[+] EMBL BX612760 [ AGCGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTTAAATTTGACGCACAGCGAAAGCG TATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCTGATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTCGCTGTGTAAAAGCTAC GGCAAGGATAAGGTGATTTTTGCTACCGCC GAGGATCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCTTGCTTCCACTACAGCCAAGCACAACCG AAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGCGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGCATGATAGCCGACGAAGGCGAG GAAGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATCAAAAACTGTAGCGACAAAAGCGAACTAAGTTGTATAAGCGAACAAACAATAATATACGCCAGAGAGTAGTGT ]
[-] EMBL CNS09PD5 [ TCGGAGAGTTACAAGGAGTGACCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTAAATCATGTCGCTGTGCAAAAGCTACGGGCAAGGATAAGGTGATTTTTGCTACCGCC GAGGATCATGCCATGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTTTCTTGCTTCCACTACAGCCAAGAACAGCCG AAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGGACTATCCTGGTGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGTTGTGGCGAGCATTATAGCCGACGAAGGCGAG GAAGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATCAAAAACTGTAGCGACAAAAGCGAACTAAGTTGTATAAGCGAACAAACAATTATATACGCCAGAGAGTAGTGTTATCTACT TGAAAAAAAAAAAAAA ]
[-] EMBL CNS0936J [ TCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGAATTTTCTTGCTTCCACTACAGCCAAGCACAGCCG AAGGGTTCGGATTGCTACGAAGCGTTCAGCACAATGAACGAATGCATGCGGAACTATCCTGGTGTGTACAAACAAAACCTCAACGAGGACGAGGATGAGGAGAGTGGTGCCGGTGTGGCGAGCATGATAGCCGACGAAGGCGAG GAAGAGGATGATGTCGATGCGCCTCCTCCGGCAAAGGCGGAAAGCGAATCAAAAATTTTAGCGACAAAAGCGAACTAAGTTGTTTAAGCGAACAAACAATAATATACGCCAGAGAGTAGTGTTA CAGCTGTGAGTAAAAAAA ]
[-] EMBL CNS09PXX [ TCCGGCAAAGGCGGAAAGCGAATCAAAAACTGTAGCGACAAAAGCGAACTAAGTTGTATAAGCGAACAAACAATAATATACGCCAGAGAGTAGTGTTA C ]
consensusID : consensus_9868#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[ATCGCCCCGAGGTTAGTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTGGATTTGCTGAAATTTGACGCACAGCGAAAGCGTATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTTGCTTGAATCATGTCGCTGTGCAAAAGCTACGGCAAGGATAAGGTAATCTTTGCCACCGCCGAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCCTGCTTCCACTACAG]
[+] EMBL AL933674 [ATCGCCCCGAGGTTAGTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAGCCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTGTTCGGCGAAATCGGTGGCCAAACTGAGGTGGATTTGCTGAAATTTGACGCACAGCGAAAGCGTATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCTGCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTTGCTTGAATCATGTCGCTGTGCAAAAGCTACGGCAAGGATAAGGTAATCTTTGCCACCGCCGAGGACCATGCCACGCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGGAGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGAGTTCCGGGAAGCATTCTCCTGCTTCCACTACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9868#0 ----------------------------------------------CAGAATCCCCCGAG 14
consensus_9868#3 -------------------------------------------------ATCGCCCCGAG 11
consensus_9868#1 CACAACATACAAAACATACTGGATAACAAAAAAAAACGCATTATTTTCTCGCCGCTCAAG 60
consensus_9868#2 --------------------------------------GGCTCAGGCAAGAACGCTCAAG 22
* * **
consensus_9868#0 -GTTNTT--------AGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAG 65
consensus_9868#3 -GTTAGTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAG 70
consensus_9868#1 CATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAG 120
consensus_9868#2 CATGGTTCTACTATGAGTGACTACTTTTATCTAGATGTTGAAATAAAACTCGCTGAAGAG 82
* * *********************************************
consensus_9868#0 CCGAACCAATTGTCCGCACTTTACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTG 125
consensus_9868#3 CCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAACGATCGCTGACGAAAGTG 130
consensus_9868#1 CCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTG 180
consensus_9868#2 CCGAACCAATTGTCCGCACTATACCTGAAGGGCAGCATAGAGCGATCGCTGACGAAAGTG 142
******************** ******************** ******************
consensus_9868#0 TTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACCCACAGCGAAAG 185
consensus_9868#3 TTCGGCGAAATCGGTGGCCAAACTGAGGTGGATTTGCTGAAATTTGACGCACAGCGAAAG 190
consensus_9868#1 TTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAG 240
consensus_9868#2 TTCGGCGAAATCGGTGGCCAAACTGAGGTTGATCTGCTGAAATTTGACGCACAGCGAAAG 202
***************************** *** ************** ***********
consensus_9868#0 CGT-ATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCT 244
consensus_9868#3 CGT-ATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGC--------- 240
consensus_9868#1 CGTGATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCT 300
consensus_9868#2 CGT-ATTATCCTGCGCGTGCCGAAAGAATTCTACGTGAAGCTCCGCGCTGCCATAACGCT 261
*** ***********************************************
consensus_9868#0 GATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCT 304
consensus_9868#3 ----------------------------AACTTCCAGGTAAAGAAGGCATCGCCCCTGCT 272
consensus_9868#1 GATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCT 360
consensus_9868#2 GATCGGAGAGTTCCAAGGAGTGCCCTGCAACTTCCAGGTAAAGAAGGCATCGCCCCTGCT 321
********************************
consensus_9868#0 GCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTTGCTTGAATCATGTC 364
consensus_9868#3 GCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTTGCTTGAATCATGTC 332
consensus_9868#1 GCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTC 420
consensus_9868#2 GCTCTCGTTGGTGGAAACGCACGTAGACTTTGCCGGTCAAACCGTCGCTTGAATCATGTC 381
********************************************* **************
consensus_9868#0 GCTGTGCAAAAGCTACGGCAAGGATAAGGTAATCTTTGCCACCGCCGAGGACCATGCCAC 424
consensus_9868#3 GCTGTGCAAAAGCTACGGCAAGGATAAGGTAATCTTTGCCACCGCCGAGGACCATGCCAC 392
consensus_9868#1 GCTGTGCAAAAGCTACGGCAAGGATAAGGTGATTTTTGCTACCGCCGAGGATCATGCCAT 480
consensus_9868#2 GCTGTGTAAAAGCTACGGCAAGGATAAGGTGATTTTTGCTACCGCCGAGGATCATGCCAC 441
****** *********************** ** ***** *********** *******
consensus_9868#0 GCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGG 484
consensus_9868#3 GCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGG 452
consensus_9868#1 GCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGG 540
consensus_9868#2 GCCGAGCAAGGTGGAGCTACCGGAATCGGAACCGCGACCGGGACTGATACTGGAAAATGG 501
************************************************************
consensus_9868#0 AGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGA 544
consensus_9868#3 AGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGA 512
consensus_9868#1 AGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGA 600
consensus_9868#2 AGACATCAACTGGAACTGTCCATGCCTCGGTGGCATGGCGATCGGTCCGTGCGGTAACGA 561
************************************************************
consensus_9868#0 GTNCCGGGAAGCATTCTCTTGCTTTCACTACAAGGCAAGCACAGCCGAAGGGTTCGGATT 604
consensus_9868#3 GTTCCGGGAAGCATTCTCCTGCTTCCACTACAG--------------------------- 545
consensus_9868#1 GTTCCGGGAAGCATTCTCTTGCTTCCACTACA-GCCAAGCACAGCCGAAGG-TTCGGATT 658
consensus_9868#2 GTTCCGGGAAGCATTCTCTTGCTTCCACTACA-GCCAAGCACAACCGAAGGGTTCGGATT 620
** *************** ***** *******
consensus_9868#0 GNTACGAAGCGTTCAGCACCAATGAACGAATGCATGCGTAAACTATACCTGGGTGTGTTA 664
consensus_9868#3 ------------------------------------------------------------
consensus_9868#1 GCTACGAAGCGTTCAGCAC-AATGAACGAATGCATGCG-GAACTAT--CCTGGTGTGT-A 713
consensus_9868#2 GCTACGAAGCGTTCAGCAC-AATGAACGAATGCATGCG-GAACTAT--CCTGGCGTGT-A 675
consensus_9868#0 CACAACAAAACCTCAAACGAGGGACCGAGGAATGAGGAGAGTGGTGCCGGTGGTGGACGA 724
consensus_9868#3 ------------------------------------------------------------
consensus_9868#1 CA-AACAAAACCTCAA-CGAGGA--CGAGGA-TGAGGAGAGTGGTGCCGGTGT--GGCGA 766
consensus_9868#2 CA-AACAAAACCTCAA-CGAGGA--CGAGGA-TGAGGAGAGTGGTGCCGGTGT--GGCGA 728
consensus_9868#0 GCNNATGATAAGCGNNACGAAAGGCGAGCAGGANGATGANTGTCCCAATGCGCCATCCTA 784
consensus_9868#3 ------------------------------------------------------------
consensus_9868#1 GCA--TGATAGCCGACG---AAGGCGAG--GGAAGAGGATGATGTCGATGCGCC-TCCTC 818
consensus_9868#2 GCA--TGATAGCCGACG---AAGGCGAG--G-AAGAGGATGATGTCGATGCGCC-TCCTC 779
consensus_9868#0 CAGGGGAAACGGCGGACAANAGCAGAACTTCAAAAAACTNGTAAGACTGAACAAANANGC 844
consensus_9868#3 ------------------------------------------------------------
consensus_9868#1 C---GGCAAAGGCGGAAAGC----GAATT---AAAAACCGTGGCGAC-------AAAAGC 861
consensus_9868#2 C---GGCAAAGGCGGAAAGC----GAATC---AAAAACTGTAGCGAC-------AAAAGC 822
consensus_9868#0 GAACCTNAAGGTCGTACTTAAGGCGGAACCAACAATTAAATATAACGCCAGANGAGTACG 904
consensus_9868#3 ------------------------------------------------------------
consensus_9868#1 GAACT---AAGTTGTA--TAAG--CGAGCAAACAAT--AATATA-CGCCAGAA-AGTA-G 909
consensus_9868#2 GAACT---AAGTTGTA--TAAG--CGAACAAACAAT--AATATA-CGCCAGAG-AGTA-G 870
consensus_9868#0 TAGTNACCAGGTGTGCAAAAACACACAAAAACAAAAAAACAAGGGGTTG 953
consensus_9868#3 -------------------------------------------------
consensus_9868#1 TGTTA--CAGCTGTTTAAAAAAAAAAAAAAAAGGCCACATG-------- 948
consensus_9868#2 TGTTA--CAGCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 915
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||