cluster # 989

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Anopheles gambiae
cluster # 989 cluster # 989 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_989#0 length = 634 sequences # 1

consensus_989#1 length = 630 sequences # 1

consensusID : consensus_989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [GCAGAATCGGCACGTAGGGACGCCAACCTTGTTGTGTGCATTGATCTTCAGAATGTACTGAGTGCCGCACTTCAAACCGTTGAGCGTGTACGCCATCTGATCGCTCGGAATTGCCACATTGGACCACGCGCCGCTGGTCGTGCGGTAGTAGAGATTGTAGCCCTGTATCGGGGCACCACCGTCGCTGGCCACCTCCCACGTCACGCGCAAACTGTCGAACGAGGTGTACTGTATCGAGAGCTGCGTCACATTCGGCGTCTGCAGCGCTATCAGCATGTAGTGTATCTCGTCCTCGCCGAACAGATTCTTCGCCGAGCAGGTAAAGTTACCGGCTATCTGTGGCTCGACGCTGTGTATCTTGAGAAAGCCTTGCGAGATCACATAGTACTGGCTGAAGGTAACGGCCTGGTCCTTCGTTATCCACCGCGTCCGGGGTGTCGGGTTACCGACGGACGACACATTCCAGCACCAGGCTCACACCGACCGGGCACCTTGAGCAGCCGGGAGAAGGACGCTATTTTGGCCGGCGCCCGGGTGTNGGTATGTTNTGCGAAACCAGCATCGTCGGGTCGCCCTCANCCTTGGCCGTCGATGCCGTCACCCAAGAAGTCGTACTATGTGGTGCTCGCGTCAG]

[+] EMBL BX468312             [GCAGAATCGGCACGTAGGGACGCCAACCTTGTTGTGTGCATTGATCTTCAGAATGTACTGAGTGCCGCACTTCAAACCGTTGAGCGTGTACGCCATCTGATCGCTCGGAATTGCCACATTGGACCACGCGCCGCTGGTCGTGCGGTAGTAGAGATTGTAGCCCTGTATCGGGGCACCACCGTCGCTGGCCACCTCCCACGTCACGCGCAAACTGTCGAACGAGGTGTACTGTATCGAGAGCTGCGTCACATTCGGCGTCTGCAGCGCTATCAGCATGTAGTGTATCTCGTCCTCGCCGAACAGATTCTTCGCCGAGCAGGTAAAGTTACCGGCTATCTGTGGCTCGACGCTGTGTATCTTGAGAAAGCCTTGCGAGATCACATAGTACTGGCTGAAGGTAACGGCCTGGTCCTTCGTTATCCACCGCGTCCGGGGTGTCGGGTTACCGACGGACGACACATTCCAGCACCAGGCTCACACCGACCGGGCACCTTGAGCAGCCGGGAGAAGGACGCTATTTTGGCCGGCGCCCGGGTGTNGGTATGTTNTGCGAAACCAGCATCGTCGGGTCGCCCTCANCCTTGGCCGTCGATGCCGTCACCCAAGAAGTCGTACTATGTGGTGCTCGCGTCAG]




>consensus_989#0
GCAGAATCGGCACGTAGGGACGCCAACCTTGTTGTGTGCATTGATCTTCAGAATGTACTG
AGTGCCGCACTTCAAACCGTTGAGCGTGTACGCCATCTGATCGCTCGGAATTGCCACATT
GGACCACGCGCCGCTGGTCGTGCGGTAGTAGAGATTGTAGCCCTGTATCGGGGCACCACC
GTCGCTGGCCACCTCCCACGTCACGCGCAAACTGTCGAACGAGGTGTACTGTATCGAGAG
CTGCGTCACATTCGGCGTCTGCAGCGCTATCAGCATGTAGTGTATCTCGTCCTCGCCGAA
CAGATTCTTCGCCGAGCAGGTAAAGTTACCGGCTATCTGTGGCTCGACGCTGTGTATCTT
GAGAAAGCCTTGCGAGATCACATAGTACTGGCTGAAGGTAACGGCCTGGTCCTTCGTTAT
CCACCGCGTCCGGGGTGTCGGGTTACCGACGGACGACACATTCCAGCACCAGGCTCACAC
CGACCGGGCACCTTGAGCAGCCGGGAGAAGGACGCTATTTTGGCCGGCGCCCGGGTGTNG
GTATGTTNTGCGAAACCAGCATCGTCGGGTCGCCCTCANCCTTGGCCGTCGATGCCGTCA
CCCAAGAAGTCGTACTATGTGGTGCTCGCGTCAG

consensusID : consensus_989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [TATTTTCTCGCCCGATAGTGTTAAGGTGGCAAAGTTATACTGTGCCAATCGTTTTCCCTGCATCGTTGTTGGAGGTGATCTTAAGCTCGTACCAGGTGGCGGGAATGAAATCGCAGAACGAAATGCTCCCATTCGTGTGCTGATCGCTGCCGGAAAGGTCGGATGAGACGATCGTCCAGAACGGTGTATGAAGCCGACGGTATTCGATGGAAAAGTGCGATATTGGGCAGCCACCGTTCAGCCAGGAGGTGAGAAACAGATTCAGGCAACTCGAGTTGGTGTTGAACAGTTCTCGCTCCTCGGGAATGTGTGGGGCTTTTCCCTTGGTGCGCACGGCCAGCTATTCAGTAAACATCCCGACGCCAACCTTGTTGTGTGCATTGATCTTCAGAATGTACTGAGTGCCGCACTTCAAACCGTTGAGCGTGTACGCCATCTGATCGCTCGGAATTGCCACATTGGACCACGCGCCGCTGGTCGTGCGGTAGTAGAGATTGTAGCCCTGTATCGGGGCACCACCGTCGCTGGCCACCTCCCACGTCACGCGCAAACTGTCGAACGAGCTCGTTTTTCTCCCTAACCAGCTTCCGATCCATGTACGCACATAGTGTATCCCAGCCAATGTTTCCA]

[-] EMBL CNS097C8             [TATTTTCTCGCCCGATAGTGTTAAGGTGGCAAAGTTATACTGTGCCAATCGTTTTCCCTGCATCGTTGTTGGAGGTGATCTTAAGCTCGTACCAGGTGGCGGGAATGAAATCGCAGAACGAAATGCTCCCATTCGTGTGCTGATCGCTGCCGGAAAGGTCGGATGAGACGATCGTCCAGAACGGTGTATGAAGCCGACGGTATTCGATGGAAAAGTGCGATATTGGGCAGCCACCGTTCAGCCAGGAGGTGAGAAACAGATTCAGGCAACTCGAGTTGGTGTTGAACAGTTCTCGCTCCTCGGGAATGTGTGGGGCTTTTCCCTTGGTGCGCACGGCCAGCTATTCAGTAAACATCCCGACGCCAACCTTGTTGTGTGCATTGATCTTCAGAATGTACTGAGTGCCGCACTTCAAACCGTTGAGCGTGTACGCCATCTGATCGCTCGGAATTGCCACATTGGACCACGCGCCGCTGGTCGTGCGGTAGTAGAGATTGTAGCCCTGTATCGGGGCACCACCGTCGCTGGCCACCTCCCACGTCACGCGCAAACTGTCGAACGAGCTCGTTTTTCTCCCTAACCAGCTTCCGATCCATGTACGCACATAGTGTATCCCAGCCAATGTTTCCA]




>consensus_989#1
TATTTTCTCGCCCGATAGTGTTAAGGTGGCAAAGTTATACTGTGCCAATCGTTTTCCCTG
CATCGTTGTTGGAGGTGATCTTAAGCTCGTACCAGGTGGCGGGAATGAAATCGCAGAACG
AAATGCTCCCATTCGTGTGCTGATCGCTGCCGGAAAGGTCGGATGAGACGATCGTCCAGA
ACGGTGTATGAAGCCGACGGTATTCGATGGAAAAGTGCGATATTGGGCAGCCACCGTTCA
GCCAGGAGGTGAGAAACAGATTCAGGCAACTCGAGTTGGTGTTGAACAGTTCTCGCTCCT
CGGGAATGTGTGGGGCTTTTCCCTTGGTGCGCACGGCCAGCTATTCAGTAAACATCCCGA
CGCCAACCTTGTTGTGTGCATTGATCTTCAGAATGTACTGAGTGCCGCACTTCAAACCGT
TGAGCGTGTACGCCATCTGATCGCTCGGAATTGCCACATTGGACCACGCGCCGCTGGTCG
TGCGGTAGTAGAGATTGTAGCCCTGTATCGGGGCACCACCGTCGCTGGCCACCTCCCACG
TCACGCGCAAACTGTCGAACGAGCTCGTTTTTCTCCCTAACCAGCTTCCGATCCATGTAC
GCACATAGTGTATCCCAGCCAATGTTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_989#0      -----GCAGAATCGGCA-CGTAGGGACGCCAACCTTGTTGTGTGC--ATTGATCTTC--A 50
consensus_989#1      TATTTTCTCGCCCGATAGTGTTAAGGTGGCAAAGTTATACTGTGCCAATCGTTTTCCCTG 60
                           *     **  *  **   *  * ***  ** *  *****  ** * * * *   

consensus_989#0      GAATGTACTGAGTGCCGCACTTCAAACCGTTGAGCGTGTACGCCATCTGATCGCT---CG 107
consensus_989#1      CATCGTTGTTGGAGGTGATCTTAAGCTCGTACCAGGTGGCGGGAATGAAATCGCAGAACG 120
                      *  **  *  * *  *  *** *   ***     ***   *  **   *****    **

consensus_989#0      GAATTGCCACATTGGACCACGCGCCGCTGGTCGTGCGGTAGTA-GAGATTGTAGCCCTGT 166
consensus_989#1      AAATGCTCCCATTCGTGTGCTGATCGCTGCCGGAAAGGTCGGATGAGACGATCGTCCAGA 180
                      ***   * **** *    *    *****   *   *** * * ****   * * ** * 

consensus_989#0      ATCGGGGCACCACCGTCGCTGGCCACCTCCCACGTCACGCGCAAACTGTCGAACGAGGTG 226
consensus_989#1      A-CGGTGTATGA----AGCCGACGGTATTCGATGG-AAAAGTGCGATATTGGGCAGCCAC 234
                     * *** * *  *     ** * *    * * * *  *   *     * * *  *      

consensus_989#0      TACTGTATCGAGAGCTGCGTCACATTCGGCGTCTGCAGCGCTATCAGCATGTAGTGTATC 286
consensus_989#1      CGTTCAGCCAGGAGGTGAGAAACA---GATTCAGGCAACTCGAGTTG-GTGTTGAACAGT 290
                        *    *  *** ** *  ***   *      *** * * *   *  *** *   *  

consensus_989#0      TCGTCCTCGCCGAACAGATTCTTCGCCGAGCAGGTAAAGTTACCGGCTATCTGTGGCTCG 346
consensus_989#1      TCTCGCTCCTCGGGAATGTGTGGGGCTTTTCCCTTGGTGCGCACGGCCAGCTAT------ 344
                     **   ***  **   *  *     **    *   *   *    **** * ** *      

consensus_989#0      ACGCTGTGTATCTTGA-GAAAGCCTTGCGAGATCACATAGTACTGGCTGAAGGTAACG-G 404
consensus_989#1      TCAGTAAACATCCCGACGCCAACCTTGTTGTGT-GCATTG-ATCTTCAGAATGTACTGAG 402
                      *  *    ***  ** *  * *****     *  *** * *    * *** ***  * *

consensus_989#0      CCTGGTCCTTCGTTATCCACCGCGTCCGGGGTGTCGGGTTACCGACGGACGACACATTCC 464
consensus_989#1      TGCCGCACTTCAAACCGTTGAGCGTGTACGCCATCTGATCGCTCGGAATTGCCACATTGG 462
                         *  ****          ****    *   ** * *  *        * ******  

consensus_989#0      AGCACCAGGCTCACACCGACCGGGCACCTTGA--GCAGCCGGG-AGAAGGACGCTATTTT 521
consensus_989#1      ACCACGCGCCGCTGGTCGTGCGGTAGTAGAGATTGTAGCCCTGTATCGGGGCACCACCGT 522
                     * ***  * * *    **  ***       **  * ****  * *   ** * * *   *

consensus_989#0      GGCCGGCGCCCGGGTGTNGGTATGTTNTGCGAAACCAGCATCGTCGGGTCGCCCTCANCC 581
consensus_989#1      CGCTGGCCACC------TCCCACGTCACGCGCAAACTGTCGAACGAGCTCGTTTTTCTCC 576
                      ** ***  **          * **   *** ** * *        * ***   *   **

consensus_989#0      TTGGCCG----TCGATGCCGTCACCCAAGAAGT-CGTACTATGTGGTGCTCGCGTCAG 634
consensus_989#1      CTAACCAGCTTCCGATCCATGTACGCACATAGTGTATCCCAGCCAATGTTTCCA---- 630
                      *  **      **** *    ** **   ***   * * *     ** *  *