|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1203 fasta sequence
[CTACTGGAATTCAGCTCTGTGCAACTTCTGGTTTGTTTGGTCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACG-ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA-TGCCCAG-CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAGCAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA-GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA-CGGCCGGTCTCGTCGGAGGAGCTCATCAAATTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG--TGCGGGT--GGGG-C-CGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCC-GGGGCCGGTTCGGTTTCGCTGGACACACGGGCGC-ACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCT-TATTTATTTGTGTCGCATTGGTTTGGGTGGGTAACGTTCAACGTGGGCGAAACGGTCAAGACAATATTGATATAACCAGAGCTCAGGCAAAAGCACCATGAATCGATGCTCTTAATTTGGCCCGAAGAAATAGAGCCGG-TGAGGTTCAAGCAGTGT-GGACAAAGGAAATAAATTAAATC-ATGAAAGCATACCAAAAAAAAAAAAAA]
[+] EMBL CNS08OKG [CTACTGGAATTCAGCTCTGTGCAACTTCTGGTTTGTTTGGTCGGCAACATTGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACG ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATCAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAGCAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAATTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG TGCGGGT GGGG C CGGCGGTGACATTCCGGCCTCCGCACCGACCAAATTTGCGT ]
[+] EMBL CNS09GEB [ CTTCTGGTTTGTTTGGGCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACG ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCAGGGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAACTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAGTTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATC ]
[+] EMBL CNS08NV9 [ TTCTGGTTTGTTTGGTCGGCAACATTGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACG ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAGCAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGC GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAATTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG TGCGGGT GGGG C CGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCAGCACATGTCGATGGGTGCC GGGGCCGGTTCGGTTTCGCTGGACACACGGGCGC ACAAG ]
[+] EMBL CNS09MEN [ TCTGGTTTGTTTGGTCGGCAACATTGTCGAA AACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACGTATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCACTGCCCAGCCTGGTAGAGCTGCTCGTGCTGAAGGA ]
[+] EMBL BM634355 [ ccgCTGGTTTGTTTGGTCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGGCTCCTGGCCATCATAAACG ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAGCAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAATTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCTACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAA ]
[+] EMBL CNS09P8E [ actggGGTTTGTTTGGTCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACG ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAAGCGGCCGGTCTCGTCGGAGGAGCTCATCAAGTTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG TGCGGGT GGGG C CGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCC GGGGCCGGTTCGGTTTCGCTGGACACACGGGCGC ACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCT TATTTATTTGTGTCGCATTGGTTTGGGTGGGTAAC ]
[+] EMBL BM607307 [ ccgCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACG ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAGTTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGGGTTGCCGGTGGGGGG C CGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCG ]
[+] EMBL CNS0972L [ ctggagggACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACGCATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGTTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATC ]
[+] EMBL AGA284680 [ GCCATCATAAACG ATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAGCAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGA ]
[+] EMBL BX612653 [ AATGTCCAGCACCGACCA TGCCCAG CTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAGCAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCA GGTTCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAATTTGCCCACCGCATCAGTGCGTCTCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG TGCGGGT GGGG C CGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCC GGGGCCGGTTCGGTTTCGCTGGACACACGGGCGC ACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATC ]
[-] EMBL CNS09P8F [ CGAACAAGCCGGCATCGAGAAAAACATGAACGCACTGCGGGAGAA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAGTTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG TGCGGGT GGGG C CGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCC GGGGCCGGTTCGGTTTCGCTGAACAAACGGGCGC ACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTACTGATATTTCTACTCGAGATGCT TATTTATTTTTGTCGCATTGGTTTGGGTGGGTAACGTTCAACGTGGGCGAAACGGTCAAGACAATATTGATATAACCAGAGCTCAGGCAAAAGCACCATGAATCGATGCTCTTAATTTGGCCCGAAGAAATAGAGCCGGTTGAGGTTCAAGCAGTGT GGACAAAGGAAATAAATTTAATC ATGAAAGCATACCAAAAAAAAAAAAAA]
[-] EMBL CNS08NVA [ GGACGCACTGCGGGAGCA GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGTTCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAATTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG TGCGGGT GGGGCC CGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCC GGGGCCGGTTCGGTTTCGCTGGACACACGGGCGC ACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCT TATTTATTTGTGTCGCATTGGTTTGGGTGGGTAACGTTCAACGTGGGCGAAACGGTCAAGACAATATTGATATAACCAGAGCTCAGGCAAAAGCACCATGAATCGATGCTCTTAATTTGGCCCGAAGAAATAGAGCCGG TGAGGTTCAAGCAGTGTGGGACAAAGGAAATA ]
[+] EMBL CNS096MR [ ACTGCGGGAGC GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGTAAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAA CGGCCGGTCTCGTCGGAGGAGCTCATCAAATTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCA ]
[-] EMBL CNS08OKH [ AACGATATGCATCGGAACGCGTCGACCGTGGG TGCGGGT GGGG CGCGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCCGGGGGCCGGTTCGGTTTCGCTGGACAAACGGGCGC ACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCAGGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCT TATTTATTTGTGTCGCATTGGTTTGGGTGGGTAACGTTCAACGTGGGCGAAACGGTCAAGACAATATTGATATAACCAGAGCTCAGGCAAAAGCACCATGAATCGATGCTCTTAATTTGGCCCGAAGAAATAGAGCCGG TGAGGTTCAAGCAGTGTGGGACAAAGGAAATAAATTAAATCGATGAAAGCATTCCAAA ]
[-] EMBL CNS0972M [ TGCC GGGGCCGGTTCGGTTTCGCTGGACACACGGGCGCAACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCT TA TTATTTGTGTCGCATTGGTTTGGGTGGGTAACGTTCAACGTGGGCGAAACGGTCAAGACAATATTGATATAACCAGAGCTCAGGCAAAAGCACCATGAATCGATGCTCTTAATTTGGCCCGAAGAAATAGAGCCGGTTGAGGTTCAAGCAGTGT GGACAAAGGAAATAAATTA ]
[-] EMBL AGA283388 [ ACACACGGGCGC ACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCT TATTTATTTGTGTCGCATTGGTTTGGGTGGGTAACGTTCAACGTGGGCGAAACGGTCAAGACAATATTGATATAACCAGAGCTCAGGCAAAAaaaa ]
[-] EMBL CNS09MEO [ GCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCTGTATTTATTTGTGTCGCA ]
consensusID : consensus_9904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 909 fasta sequence
[AAACACCATTCAGGTCTGTGCAAACTTCTGGTTTGTTTGGTCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCCCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGC-GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCG-CCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGGTGCGGGTGGGGCCGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCCGGGGCCGGTTCGGTTTCGCTGGACACACGGGCGCACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTAAAAAAAAAAAAAAAAAAA]
[+] EMBL CNS09PP7 [AAACACCATTCAGGTCTGTGCAAACTTCTGGTTTGTTTGGTCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCCCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGC GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCG CCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGGTGCGGGTGGGGCCGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCCGGGGCCGGTTCGGTTTCGCTGGACACACGGGCGCACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACGAATCCCCCTTTCTGATATTTCTAAAAAAAAAAAAAAAAAAA]
[+] EMBL CNS09BF0 [ GGTCTGTGC AACTTCTGGTTTGTTTGGTCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTGCTGAAGGATGGGGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGC GGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCG CCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAAATGCATCGG ]
[-] EMBL CNS09PP8 [ GGTTTGTTTGGTCGGCAACATCGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCCCATATCATCTCAGCACCCGAGAACAACTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAAAAAAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCAGGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGGACAGATTCTGGCGACGTCAATTTTTCAAGCGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCG CCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGGTGCGGGTGGGGCCGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCCGGGGCCGGTTCGGTTTCGCTGGACACACGGGCGCACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGA ]
[-] EMBL CNS09BF1 [ ACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGGTGCGGGTGGGGCCGGCGGTGACATTCCGGCCTCCGCACCGAACCAATTAACGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCCGGGGCCGGTTCGGTTTCGCTGGACACACGGGCGCACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGA ]
[-] EMBL CNS096MS [ ACCAATTTGCGTGGCATCCGTCGGGGGAGCTGCACATGTCGATGGGTGCCGGGGCCGGTTCGGTTTCGCTGGACACACGGGCGCACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCGACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGAACTGGTGATGAATGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAAACG ATCCCCCTTTCTGATATTTTTAAAAAAAAA ]
consensusID : consensus_9904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCGCCCACGCGTCCGGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCAGGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAACGGCCGGTCTCGTCGGAGGAGCTCATCAAGTTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG]
[+] EMBL BM607509 [CCGCCCACGCGTCCGGTCGAAGAACGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGACTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATCGCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTGCTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAGAAAAACATGGACGCACTGCGGGAGCAGGTGCGGAAACAGGACGAGGAAATCAACCAGCTCCAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAAAAGCTGGCCAGCATTGCGAAGGCCAACAAACGGCCGGTCTCGTCGGAGGAGCTCATCAAGTTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGCGATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCGGACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGGAACGCGTCCACCGTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9904#0 CTACTGGAATTCAGCTCTGTGCAACTTCTGGTTTGTTTGGTCGGCAACATCGTCGAAGAA 60
consensus_9904#2 ------------------------------------CCGCCCACGCGTCCGGTCGAAGAA 24
consensus_9904#1 AAACACCATTCAGGTCTGTGCAAACTTCTGGTTTGTTTGGTCGGCAACATCGTCGAAGAA 60
* * *********
consensus_9904#0 CGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGA 120
consensus_9904#2 CGTTTCGTGCCGTCGTACAATATCGCCATGTCCTCATATCATCTCAGCACCCGAGAACGA 84
consensus_9904#1 CGTTTCGTGCCGTCGTACAATATCGCCATGTCCCCATATCATCTCAGCACCCGAGAACGA 120
********************************* **************************
consensus_9904#0 CTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATC 180
consensus_9904#2 CTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATC 144
consensus_9904#1 CTCCTGGCCATCATAAACGATATAGAAATCGTTGCCAAGGAACTGATCGAAAACACAATC 180
************************************************************
consensus_9904#0 GCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTG 240
consensus_9904#2 GCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTG 204
consensus_9904#1 GCACCCAAGGCGCAGAAAATGTCCAGCACCGACCATGCCCAGCTGGTAGAGCTGCTCGTG 240
************************************************************
consensus_9904#0 CTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAGCAAGCCGGCATCGAG 300
consensus_9904#2 CTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAG 264
consensus_9904#1 CTGAAGGATAAAGAGCTGAAGGCAACGCTCCAGCTAGCGGCCGAACAAGCCGGCATCGAG 300
******************************************** ***************
consensus_9904#0 AAAAACATGGACGCACTGCGGGAGCAGGTGCGGAAACAGGACGAGGAAATCAACCAGCTC 360
consensus_9904#2 AAAAACATGGACGCACTGCGGGAGCAGGTGCGGAAACAGGACGAGGAAATCAACCAGCTC 324
consensus_9904#1 AAAAACATGGACGCACTGCGGGAGC-GGTGCGGAAACAGGACGAGGAAATCAACCAGCTC 359
************************* **********************************
consensus_9904#0 CAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAA 420
consensus_9904#2 CAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGACAA 384
consensus_9904#1 CAGCGGCAGCTAAAGGAAGCGGAACAGATTCTGGCGACGTCAATTTTTCAAGCGCGA--- 416
*********************************************************
consensus_9904#0 AAGCTGGCCAGCATTGCGAAGGCCAACAAACGGCCGGTCTCGTCGGAGGAGCTCATCAAA 480
consensus_9904#2 AAGCTGGCCAGCATTGCGAAGGCCAACAAACGGCCGGTCTCGTCGGAGGAGCTCATCAAG 444
consensus_9904#1 ------------------------------------------------------------
consensus_9904#0 TTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGC 540
consensus_9904#2 TTTGCCCACCGCATCAGTGCGTCCCACGCGATATGTGCCCCGCTCACCTGGCAGCAGGGC 504
consensus_9904#1 -------------------------------TATGTGCCCCGCTCACCTGGCAGCAGGGC 445
*****************************
consensus_9904#0 GATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCG 600
consensus_9904#2 GATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCG 564
consensus_9904#1 GATCTTCGCCGGCCATACCCGACCGACATCGAGATGCGGCTGGGCTTTCTGGGCAAGTCG 505
************************************************************
consensus_9904#0 GACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGG 660
consensus_9904#2 GACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGG 624
consensus_9904#1 GACCTCAACATCAACGGGCACAATCTGCAGCATCCCAACAGCTTGAACGAGATGCATCGG 565
************************************************************
consensus_9904#0 AACGCGTCCACCGTGGGTGCGGGTGGGGCCGGCGGTGACATTCCGGCCTCCGCACCGAAC 720
consensus_9904#2 AACGCGTCCACCGTGGG------------------------------------------- 641
consensus_9904#1 AACGCGTCCACCGTGGGTGCGGGTGGGGCCGGCGGTGACATTCCGGCCTCCGCACCGAAC 625
*****************
consensus_9904#0 CAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCCGGGGCCGGTTCG 780
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 CAATTTGCGTGGCATCCGTCGGGCGAGCTGCACATGTCGATGGGTGCCGGGGCCGGTTCG 685
consensus_9904#0 GTTTCGCTGGACACACGGGCGCACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCG 840
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 GTTTCGCTGGACACACGGGCGCACAAGGATGCATCGCAGGATGATGTGGAAGTCATGTCG 745
consensus_9904#0 ACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAA 900
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 ACCGAAAGCTCGAGCTCGAGCTCCAGCGATTCTCAGTGAGCGGCTGGCACTGGTGATGAA 805
consensus_9904#0 TGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAA 960
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 TGTATAGGATTAAGTATTTGCCGTGTATTGTTAGCTGCATGTCGTGACTTGAGGAATGAA 865
consensus_9904#0 ACGAATCCCCCTTTCTGATATTTCTACTCGAGATGCTTATTTATTTGTGTCGCATTGGTT 1020
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 ACGAATCCCCCTTTCTGATATTTCTAAAAAAAAAAAAAAAAAAA---------------- 909
consensus_9904#0 TGGGTGGGTAACGTTCAACGTGGGCGAAACGGTCAAGACAATATTGATATAACCAGAGCT 1080
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 ------------------------------------------------------------
consensus_9904#0 CAGGCAAAAGCACCATGAATCGATGCTCTTAATTTGGCCCGAAGAAATAGAGCCGGTGAG 1140
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 ------------------------------------------------------------
consensus_9904#0 GTTCAAGCAGTGTGGACAAAGGAAATAAATTAAATCATGAAAGCATACCAAAAAAAAAAA 1200
consensus_9904#2 ------------------------------------------------------------
consensus_9904#1 ------------------------------------------------------------
consensus_9904#0 AAA 1203
consensus_9904#2 ---
consensus_9904#1 ---
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||