cluster # 998

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Anopheles gambiae
cluster # 998 cluster # 998 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_998#0 length = 510 sequences # 1

consensus_998#1 length = 443 sequences # 1

consensusID : consensus_998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCACCGAGAGAAAGCCAGAGTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCCTGCAGCAGAACTCCCTGCCCTGCCCGGATCG]

[+] EMBL BX627268             [ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCACCGAGAGAAAGCCAGAGTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCCTGCAGCAGAACTCCCTGCCCTGCCCGGATCG]




>consensus_998#0
ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCACCGAGAGAAAGCCAGA
GTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACGC
CTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGT
CGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCT
CGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTT
CCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTG
CGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTG
CGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCCT
GCAGCAGAACTCCCTGCCCTGCCCGGATCG

consensusID : consensus_998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [ATCGGCCGAGGTGAGAGAAAGCCAGAGTGCAAATGATCCAACCGTTCGTCTGCATACTGATCGTGGCGGCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC]

[+] EMBL AL932671             [ATCGGCCGAGGTGAGAGAAAGCCAGAGTGCAAATGATCCAACCGTTCGTCTGCATACTGATCGTGGCGGCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC]




>consensus_998#1
ATCGGCCGAGGTGAGAGAAAGCCAGAGTGCAAATGATCCAACCGTTCGTCTGCATACTGA
TCGTGGCGGCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGC
GGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCC
CGCCTTCCGGCCCGCCTCCTTCCTCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACAC
GCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCC
GGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAA
GGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTT
CTCCAACCGCCATCTGGTCTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_998#0      ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCAC-CGAGAGAAAGCCAG 59
consensus_998#1      -----------------------------------ATCGGCCGAGGTGAGAGAAAGCCAG 25
                                                        * *  ** *   *************

consensus_998#0      AGTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACG 119
consensus_998#1      AGTGCAAA-TGATCCAACCGTTCGTCTGCATACTGATCGTGGCGGC-GGTTGCGCCAACG 83
                     ******** ***** ******************************* *************

consensus_998#0      CCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGG 179
consensus_998#1      CCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGG 143
                     ************************************************************

consensus_998#0      TCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCC 239
consensus_998#1      TCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCC 203
                     ************************************************************

consensus_998#0      TCGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGT 299
consensus_998#1      TCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGT 263
                     **** *******************************************************

consensus_998#0      TCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCT 359
consensus_998#1      TCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCT 323
                     ************************************************************

consensus_998#0      GCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACT 419
consensus_998#1      GCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACT 383
                     ************************************************************

consensus_998#0      GCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC 479
consensus_998#1      GCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC 443
                     ************************************************************

consensus_998#0      TGCAGCAGAACTCCCTGCCCTGCCCGGATCG 510
consensus_998#1      -------------------------------