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Apis mellifera
cluster # 100 cluster # 100       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_100#0 length = 753 sequences # 6  
 consensus_100#1 length = 216 sequences # 1  
consensusID : consensus_100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 753
fasta sequence 
                              [GACTTGGTACTTGGCAATCTGCAGATAATCCAGGTGTCGTCGAACAAGCTGTACGAGATGCTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTCGAGATTAGCAAAAAATATGAAAAAACGCCAGCTCAAGTTGTTTTACGATATTTGATCGATATTGGTACTGTTCCTATTCCGAAATCTAGTTCAA]

[+] EMBL BI513082             [GACTTGGTACTTGGCAATCTGCAGATAATCCAGGTGTCGTCGAACAAGCTGTACGAGATGCTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAA      GAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAA                                                                                                                                                                                                                                   ]
[+] EMBL BI511786             [                                     CGTCGAACAAGCTGTACGAGATGCTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGT                                                                                                                       ]
[+] EMBL BI515252             [                                                                      CGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTA                                                                                                                                                                                                                                     ]
[+] EMBL BI505271             [                                                                         ATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTCTAGATTAGCAAAAAATATGAAA                                                                        ]
[+] EMBL BI512974             [                                                                         ATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGNGATTTTTGCAAACAAC                                                                                                                                                                                                   ]
[+] EMBL BI503235             [                                                                                                                                                                                              GTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGGCTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTCGAGATTAGCAAAAAATATGAAAAAACGCCAGCTCAAGTTGTTTTACGATATTTGATCGATATTGGTACTGTTCCTATTCCGAAATCTAGTTCAA]




>consensus_100#0
GACTTGGTACTTGGCAATCTGCAGATAATCCAGGTGTCGTCGAACAAGCTGTACGAGATG
CTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAG
TAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTA
TCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAA
CATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGT
CTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGA
ATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGA
AAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTC
AAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTC
GAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCTA
AACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTCG
AGATTAGCAAAAAATATGAAAAAACGCCAGCTCAAGTTGTTTTACGATATTTGATCGATA
TTGGTACTGTTCCTATTCCGAAATCTAGTTCAA

consensusID : consensus_100#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence 
                              [TCGCTTAAAAATTTTGGATTCGANTATGTTGATCTNTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGANACTGNAGGATCATGGCNCANANCCCAAGATCTNTTAGGGNAACCANNTTGGACTGTACACCCGGCATAGGCTATGTCACATTGGTGTTGCAAAAATCTCNACCTTTTGCTTGATTTAAATTTGGATGGCATTCTACTT]

[+] EMBL BG101553             [TCGCTTAAAAATTTTGGATTCGANTATGTTGATCTNTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGANACTGNAGGATCATGGCNCANANCCCAAGATCTNTTAGGGNAACCANNTTGGACTGTACACCCGGCATAGGCTATGTCACATTGGTGTTGCAAAAATCTCNACCTTTTGCTTGATTTAAATTTGGATGGCATTCTACTT]




>consensus_100#1
TCGCTTAAAAATTTTGGATTCGANTATGTTGATCTNTATCTTATCCATTGGCCCATGTCT
TATGATGAAGTAAATGANACTGNAGGATCATGGCNCANANCCCAAGATCTNTTAGGGNAA
CCANNTTGGACTGTACACCCGGCATAGGCTATGTCACATTGGTGTTGCAAAAATCTCNAC
CTTTTGCTTGATTTAAATTTGGATGGCATTCTACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_100#0      GACTTGGTACTTGGCAATCTGCAGATAATCCAGGTGTCGTCGAACAAGCTGTACGAGATG 60
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      CTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAG 120
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      TAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTA 180
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      TCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAA 240
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      CATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGT 300
consensus_100#1      --TCGCTTAAAAATTTTGGATTCGANTATGTTGATCTNTATCTTATCCATTGGCCCATGT 58
                       *********************** *********** **********************

consensus_100#0      CTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGA 360
consensus_100#1      CTTATGATGAAGTAAATGANACTGNAGGATCATGGCNCANANCCCAAGATCTNTTAGGGN 118
                     ******************* *  * * * *  **** ** * *  ******* *  * * 

consensus_100#0      ATGTGGATTATTGTG-ACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACG 419
consensus_100#1      AACCANNTTGGACTGTACACCCGGCAT--------AGGCTATGTCACATTGGTGTTGCAA 170
                     *      **    ** ****  ****         **  * *** * *****  **    

consensus_100#0      AAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCT 479
consensus_100#1      AAATCTCNACCTTTTGCTTGATTTAAATTTGGATGG---CATTCTACTT----------- 216
                     ***     *  * **  *   ***** *    *  *    **  ** **           

consensus_100#0      CAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTT 539
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      CGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCT 599
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      AAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTC 659
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      GAGATTAGCAAAAAATATGAAAAAACGCCAGCTCAAGTTGTTTTACGATATTTGATCGAT 719
consensus_100#1      ------------------------------------------------------------
                                                                                 

consensus_100#0      ATTGGTACTGTTCCTATTCCGAAATCTAGTTCAA 753
consensus_100#1      ----------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)