These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence [TTCCATCGTTCCTTCTCTCATTCGATCGTTTCTTCTATTTTTCTCCGTCCACTCATGTACACATACACATATATACATATTTTTTTTTTAACTTTACCATTATTTTTTATGTTTTCTTTCTCTTCCCTCTCTCTCTTTCTCTCTCTTAATGATCGCGTATAAGTAAATAAATACTTAAGTACTAATGCCAATAATTTTTCGGTAGATTTCGATAATTTTAAATTATTATTATTACAATTAAGTTGAATAGTCGGAGATTGAGCATTGCTCGATGGTGCATTATGGTAATGTTACAATATTCGATCAATCTATATATAATTTAACAATAATGGCGAAGTAAAACTGTCGTTTAATCCTCCTTCGATTACGATACTCTGTCAAATTTATAAATCGATTTCAATTGATCGCGATAGAAGACCATTTTCTAATATTGAGATCGCGATCCGAGTTTCTGTGGGGCAAACAAGGATTCGATGTCTTGGAACATTCAAATTTCTCTGCGCTGCAACCGATGCATTTATTACAGCTGCATTGCATACCTTCGGCACAAATACCAAGATAGTTTTGCGGTCCTCCGCACAATTCATCGGGCCCCTGGAGAAATAAATGTAGAATTATAAATGTAGAAAATGTAGTGAAATGTTGTAACTCGATCGATTTCTAACTACTATTGATTAATTATTAATATGAAAACATAGATTCATTACTTAATACTCGCCTTTGCGCATTGCACAATGCCGCAAGCGCTCGACATCGCAATACCGTATTTGCATTTATGGCAAGAATCACCACATCCTAAGCAATAAGATGTTGTTCCTTGTCTTATCGATGGATAACCGGAACATTTATCAAACCTGATCAAATCAAGTATATGTACATTATTGTCATGCATTTACCTATAATAATACCATATCAAATTTGTTCGTTTCTCTTTGATCCTCGTTTTTCACACGCGTAATCGATGCATGATACGTAT] [+] EMBL BI511420 [TTCCATCGTTCCTTCTCTCATTCGATCGTTTCTTCTATTTTTCTCCGTCCACTCATGTACACATACACATATATACATATTTTTTTTTTAACTTTACCATTATTTTTTATGTTTTCTTTCTCTTCCCTCTCTCTCTTTCTCTCTCTTAATGATCGCGTATAAGTAAATAAATACTTAAGTACTAATGCCAATAATTTTTCGGTAGATTTCGATAATTTTAAATTATTATTATTACAATTAAGTTGAATAGTCGGAGATTGAGCATTGCTCGATGGTGCATTATGGTAATGTTACAATATTCGATCAATCTATATATAATTTAACAATAATGGCGAAGTAAAACTGTCGTTTAATCCTCCTTCGATTACGATACTCTGTCAAATTTATAAATCGATTTCAATTGATCGCGATAGAAGACCATTTTCTAATATTGAGATCGCGATCCGAGTTTCTGTGGGGCAAACAAGGATTCGATGTCTTGGAACATTCAAATTTCTCTGCGCTGCAACCGATGCATTTATTACAGC ] [+] EMBL BI510052 [ CCTTCGATTACGATACTCTGTCAAATTTATAAATCGATTTCAATTGATCGCGATAGAAGACCATTTTCTAATATTGAGATCGCGATCCGAGTTTCTGTGGGGCAAACAAGGATTCGATGTCTTGGAACATTCAAATTTCTCTGCGCTGCAACCGATGCATTTATTACAGCTGCATTGCATACCTTCGGCACAAATACCAAGATAGTTTTGCGGTCCTCCGCACAATTCATCGGGCCCCTGGAGAAATAAATGTAGAATTATAAATGTAGAAAATGTAGTGAAATGTTGTAACTCGATCGATTTCTAACTACTATTGATTAATTATTAATATGAAAACATAGATTCATTACTTAATACTCGCCTTTGCGCATTGCACAATGCCGCAAGCGCTCGACATCGCAATACCGTATTTGCATTTATGGCAAGAATCACCACATCCTAAGCAATAAGATGTTGTTCCTTGTCTTATCGATGGATAACCGGAACATTTATCAAACCTGATCAAATCAAGTATATGTACATTATTGTCATGCATTTACCTATAATAATACCATATCAAATTTGTTCGTTTCTCTTTGATCCTCGTTTTTCACACGCGTAATCGATGCATGATACGTAT] consensusID : consensus_1029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [TTTTTTTTCGATAATTTTAAATTATTATTATTACAATTAAGTTGAATAGTCGGAGATTGAGCATTGCTCGATGGTGCATTATGGTAATGTTACAATATTCGATCAATCTATATATAATTTAACAATAATGGCGAAGTAAAACTGTCGTTTAATCCTCCTTCGATTACGATACTCTGTCAAATTTATAAATCGATTTCAATTGATCGCGATAGAAGACCATTTTCTAATATTGAGATCGCGATCCGAGTTTCTGTGGGGCAAACAAGGATTCGATGTCTTGGAACATTCAAATTTCTCTGCGCTGCAACCGATGCATTTATTACAGCTGCATTGCATACCTTCGGCACAAATACCAAGATAGTTTTGCGGTCCTCCGCACAATTCATCGGGCCCCTTTGCGCATTGCACAATGCCGCAAGCGCTCGACATCGCAATACCGTATTTGCATTTATGGCAAGAATCACCACATCCTAAGCAATAAGATGTTGTTCCTTGTCTTATCGATGGATAACCGGAACATTTATCAAACAGAAAAACAATGGCAAGCAGTACGGCTATGCGG] [-] EMBL BI505843 [TTTTTTTTCGATAATTTTAAATTATTATTATTACAATTAAGTTGAATAGTCGGAGATTGAGCATTGCTCGATGGTGCATTATGGTAATGTTACAATATTCGATCAATCTATATATAATTTAACAATAATGGCGAAGTAAAACTGTCGTTTAATCCTCCTTCGATTACGATACTCTGTCAAATTTATAAATCGATTTCAATTGATCGCGATAGAAGACCATTTTCTAATATTGAGATCGCGATCCGAGTTTCTGTGGGGCAAACAAGGATTCGATGTCTTGGAACATTCAAATTTCTCTGCGCTGCAACCGATGCATTTATTACAGCTGCATTGCATACCTTCGGCACAAATACCAAGATAGTTTTGCGGTCCTCCGCACAATTCATCGGGCCCCTTTGCGCATTGCACAATGCCGCAAGCGCTCGACATCGCAATACCGTATTTGCATTTATGGCAAGAATCACCACATCCTAAGCAATAAGATGTTGTTCCTTGTCTTATCGATGGATAACCGGAACATTTATCAAACAGAAAAACAATGGCAAGCAGTACGGCTATGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1029#0 TTCCATCGTTCCTTCTCTCATTCGATCGTTTCTTCTATTTTTCTCCGTCCACTCATGTAC 60 consensus_1029#1 ------------------------------------------------------------ consensus_1029#0 ACATACACATATATACATATTTTTTTTTTAACTTTACCATTATTTTTTATGTTTTCTTTC 120 consensus_1029#1 ------------------------------------------------------------ consensus_1029#0 TCTTCCCTCTCTCTCTTTCTCTCTCTTAATGATCGCGTATAAGTAAATAAATACTTAAGT 180 consensus_1029#1 ------------------------------------------------------------ consensus_1029#0 ACTAATGCCAATAATTTTTCGGTAGATTTCGATAATTTTAAATTATTATTATTACAATTA 240 consensus_1029#1 ---------------------TTTTTTTTCGATAATTTTAAATTATTATTATTACAATTA 39 * ********************************** consensus_1029#0 AGTTGAATAGTCGGAGATTGAGCATTGCTCGATGGTGCATTATGGTAATGTTACAATATT 300 consensus_1029#1 AGTTGAATAGTCGGAGATTGAGCATTGCTCGATGGTGCATTATGGTAATGTTACAATATT 99 ************************************************************ consensus_1029#0 CGATCAATCTATATATAATTTAACAATAATGGCGAAGTAAAACTGTCGTTTAATCCTCCT 360 consensus_1029#1 CGATCAATCTATATATAATTTAACAATAATGGCGAAGTAAAACTGTCGTTTAATCCTCCT 159 ************************************************************ consensus_1029#0 TCGATTACGATACTCTGTCAAATTTATAAATCGATTTCAATTGATCGCGATAGAAGACCA 420 consensus_1029#1 TCGATTACGATACTCTGTCAAATTTATAAATCGATTTCAATTGATCGCGATAGAAGACCA 219 ************************************************************ consensus_1029#0 TTTTCTAATATTGAGATCGCGATCCGAGTTTCTGTGGGGCAAACAAGGATTCGATGTCTT 480 consensus_1029#1 TTTTCTAATATTGAGATCGCGATCCGAGTTTCTGTGGGGCAAACAAGGATTCGATGTCTT 279 ************************************************************ consensus_1029#0 GGAACATTCAAATTTCTCTGCGCTGCAACCGATGCATTTATTACAGCTGCATTGCATACC 540 consensus_1029#1 GGAACATTCAAATTTCTCTGCGCTGCAACCGATGCATTTATTACAGCTGCATTGCATACC 339 ************************************************************ consensus_1029#0 TTCGGCACAAATACCAAGATAGTTTTGCGGTCCTCCGCACAATTCATCGGGCCCCTGGAG 600 consensus_1029#1 TTCGGCACAAATACCAAGATAGTTTTGCGGTCCTCCGCACAATTCATCGGGCCCCT---- 395 ******************************************************** consensus_1029#0 AAATAAATGTAGAATTATAAATGTAGAAAATGTAGTGAAATGTTGTAACTCGATCGATTT 660 consensus_1029#1 ------------------------------------------------------------ consensus_1029#0 CTAACTACTATTGATTAATTATTAATATGAAAACATAGATTCATTACTTAATACTCGCCT 720 consensus_1029#1 ------------------------------------------------------------ consensus_1029#0 TTGCGCATTGCACAATGCCGCAAGCGCTCGACATCGCAATACCGTATTTGCATTTATGGC 780 consensus_1029#1 TTGCGCATTGCACAATGCCGCAAGCGCTCGACATCGCAATACCGTATTTGCATTTATGGC 455 ************************************************************ consensus_1029#0 AAGAATCACCACATCCTAAGCAATAAGATGTTGTTCCTTGTCTTATCGATGGATAACCGG 840 consensus_1029#1 AAGAATCACCACATCCTAAGCAATAAGATGTTGTTCCTTGTCTTATCGATGGATAACCGG 515 ************************************************************ consensus_1029#0 AACATTTATCAAACCTGATCAAATCAAGTATATGTACATTATTGTCATGCATTTACCTAT 900 consensus_1029#1 AACATTTATCAAAC---AGAAAAACAATGGCAAG--CAGTACGGCTATGCGG-------- 562 ************** * *** *** * * ** ** * **** consensus_1029#0 AATAATACCATATCAAATTTGTTCGTTTCTCTTTGATCCTCGTTTTTCACACGCGTAATC 960 consensus_1029#1 ------------------------------------------------------------ consensus_1029#0 GATGCATGATACGTAT 976 consensus_1029#1 ---------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |