These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [ACGGGAGAAATATCACGAAATTTTCTAACGGGAAATTCCAATATAAAATTTTTCTTCGATCTATTAGAATAACGTAATAATGTTTCGATTTGTTCGTCGAATAACAATAGTGTAATTTTCTTCCGATCTGTACGAGGCAGCTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATATATATANNNNNNNATATATATATATATATATATATATATATCTCGCTTGTAAGAAAACTTACGGTGCGCTATTGCTCGCAAACAAACTCAAATCCCGTTTCTCCTGCACCGTTTTTTCGCACCACGCTTGTCCATCCGTATCGTTCGTCCATCTTCTTTTCATCAGTGGACTAACAGGGCTAACATTTCGCGTCGTAATTAATATTATAGTTGGCGAACAATAGCGTATCGATGTGGAAATCGAAAAAGAATGCGAAAAAGGAAGCTGGGAAGAGAGAGAGAAAAGAGAGAGATAGAGAGAGGAGAGAGAAAAAAAAGAACGGATCGAGGAGAAATTGATACAGAGGAAAGNCAAAGCGAACAATGGCTGGCTGTGTACAATGGGCGNNGCGCCAATTCGAGTTTTCGGGATACGAAAAAAGAGTGAT] [+] EMBL BI509078 [ACGGGAGAAATATCACGAAATTTTCTAACGGGAAATTCCAATATAAAATTTTTCTTCGATCTATTAGAATAACGTAATAATGTTTCGATTTGTTCGTCGAATAACAATAGTGTAATTTTCTTCCGATCTGTACGAGGCAGCTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATATATATANNNNNNNATATATATATATATATATATATATATATCTCGCTTGTAAGAAAACTTACGGTGCGCTATTGCTCGCAAACAAACTCAAATCCCGTTTCTCCTGCACCGTTTTTTCGCACCACGCTTGTCCATCCGTATCGTTCGTCCATCTTCTTTTCATCAGTGGACTAACAGGGCTAACATTTCGCGTCGTAATTAATATTATAGTTGGCGAACAATAGCGTATCGATGTGGAAATCGAAAAAGAATGCGAAAAAGGAAGCTGGGAAGAGAGAGAGAAAAGAGAGAGATAGAGAGAGGAGAGAGAAAAAAAAGAACGGATCGAGGAGAAATTGATACAGAGGAAAGNCAAAGCGAACAATGGCTGGCTGTGTACAATGGGCGNNGCGCCAATTCGAGTTTTCGGGATACGAAAAAAGAGTGAT] consensusID : consensus_1031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 499 fasta sequence [AGAAATATCACGAAATTTTCTAACGGGAAATTCCAATATAAAATTTTTCTTCGATCTATTAGAATAACGTAATAATGTTTCGATTTGTTCGTCGAATAACAATAGTGTAATTTTCTTCCGATCTGTACGAGGCAGCTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATATATATATATATATATATATATATATATATCTCGCTTGTAAGAAAACTTACGGTGCGCTATTGCTCGCAAACAAACTCAAATCCCGTTTCTCCTGCACCGTTTTTTTCGCACCACGCTTGTCCATCCGTATCGTTCGTCCATCTTCTTTTCATCANNNGACTAACAGGGCTAACATTTCGCGTCGTAATTAATATTATAGTTGGCGAACAATAGCGTATCGATGTGGAAATCGAAAAAGAATGCGAAAAAGGAAGCTGGGAAGAGAGAGAGAAAAGAGAGAGATAGAGAGAGGAGAGAGAAAAAAAAGAACGGATCGAGGAGAAA] [+] EMBL BI514186 [AGAAATATCACGAAATTTTCTAACGGGAAATTCCAATATAAAATTTTTCTTCGATCTATTAGAATAACGTAATAATGTTTCGATTTGTTCGTCGAATAACAATAGTGTAATTTTCTTCCGATCTGTACGAGGCAGCTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATATATATATATATATATATATATATATATATCTCGCTTGTAAGAAAACTTACGGTGCGCTATTGCTCGCAAACAAACTCAAATCCCGTTTCTCCTGCACCGTTTTTTTCGCACCACGCTTGTCCATCCGTATCGTTCGTCCATCTTCTTTTCATCAGTGGACTAACAGGGCTAACATTTCGCGTCGTAATTAATATTATAGTTGGCGAACAATAGCGTATCGATGTGGAAATCGAAAAAGAATGCGAAAAAGGAAGCTGGGAAGAGAGAGAGAAAAGAGAGAGATAGAGAGAGGAGAGAGAAAAAAAAGAACGGATCGAGGAGAAA] [+] EMBL BI514207 [AGAAATATCACGAAATTTTCTAACGGGAAATTCCAATATAAAATTTTTCTTCGATCTATTAGAATAACGTAATAATGTTTCGATTTGTTCGTCGAATAACAATAGTGTAATTTTCTTCCGATCTGTACGAGGCAGCTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATATATATATATATATATATATATATATATATCTCGCTTGTAAGAAAACTTACGGTGCGCTATTGCTCGCAAACAAACTCAAATCCCGTTTCTCCTGCACCGTTTTTTTCGCACCACGCTTGTCCATCCGTATCGTTCGTCCATCTTCTTTTCATCANNNGACTAACAGGGCTAACATTTCGCGTCGTAATTAATATTATAGTTGGCGAACAATAGCGTATCGATGTGGAAATCGAAAAAGAATGCGAAAAAGGAAGCTGGGAAGAGAGAGAGAAAAGAGAGAGATAGAGAGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1031#0 ACGGGAGAAATATCACGAAATTTTCTAACGGGAAATTCCAATATAAAATTTTTCTTCGAT 60 consensus_1031#1 -----AGAAATATCACGAAATTTTCTAACGGGAAATTCCAATATAAAATTTTTCTTCGAT 55 ******************************************************* consensus_1031#0 CTATTAGAATAACGTAATAATGTTTCGATTTGTTCGTCGAATAACAATAGTGTAATTTTC 120 consensus_1031#1 CTATTAGAATAACGTAATAATGTTTCGATTTGTTCGTCGAATAACAATAGTGTAATTTTC 115 ************************************************************ consensus_1031#0 TTCCGATCTGTACGAGGCAGCTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATA 180 consensus_1031#1 TTCCGATCTGTACGAGGCAGCTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATA 175 ************************************************************ consensus_1031#0 TATATANNNNNNNATATATATATATATATATATATATATATCTCGCTTGTAAGAAAACTT 240 consensus_1031#1 TATATATATATATATATATATATATATAT------------CTCGCTTGTAAGAAAACTT 223 ****** **************** ******************* consensus_1031#0 ACGGTGCGCTATTGCTCGCAAACAAACTCAAATCCCGTTTCTCCTGCACCGTTTTTT-CG 299 consensus_1031#1 ACGGTGCGCTATTGCTCGCAAACAAACTCAAATCCCGTTTCTCCTGCACCGTTTTTTTCG 283 ********************************************************* ** consensus_1031#0 CACCACGCTTGTCCATCCGTATCGTTCGTCCATCTTCTTTTCATCAGTGGACTAACAGGG 359 consensus_1031#1 CACCACGCTTGTCCATCCGTATCGTTCGTCCATCTTCTTTTCATCANNNGACTAACAGGG 343 ********************************************** *********** consensus_1031#0 CTAACATTTCGCGTCGTAATTAATATTATAGTTGGCGAACAATAGCGTATCGATGTGGAA 419 consensus_1031#1 CTAACATTTCGCGTCGTAATTAATATTATAGTTGGCGAACAATAGCGTATCGATGTGGAA 403 ************************************************************ consensus_1031#0 ATCGAAAAAGAATGCGAAAAAGGAAGCTGGGAAGAGAGAGAGAAAAGAGAGAGATAGAGA 479 consensus_1031#1 ATCGAAAAAGAATGCGAAAAAGGAAGCTGGGAAGAGAGAGAGAAAAGAGAGAGATAGAGA 463 ************************************************************ consensus_1031#0 GAGGAGAGAGAAAAAAAAGAACGGATCGAGGAGAAATTGATACAGAGGAAAGNCAAAGCG 539 consensus_1031#1 GAGGAGAGAGAAAAAAAAGAACGGATCGAGGAGAAA------------------------ 499 ************************************ consensus_1031#0 AACAATGGCTGGCTGTGTACAATGGGCGNNGCGCCAATTCGAGTTTTCGGGATACGAAAA 599 consensus_1031#1 ------------------------------------------------------------ consensus_1031#0 AAGAGTGAT 608 consensus_1031#1 --------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |