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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 555 fasta sequence
[TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA]
[+] EMBL BI515803 [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA]
[+] EMBL BI510354 [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACA ]
consensusID : consensus_1042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACAACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA]
[+] EMBL BI505852 [GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACAACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1042#0 -------------------------------------------TTTTAAATTTTTTTCTC 17
consensus_1042#1 GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTC 60
*****************
consensus_1042#0 ATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACA 77
consensus_1042#1 ATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACA 120
************************************************************
consensus_1042#0 GCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTG 137
consensus_1042#1 GCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTG 180
************************************************************
consensus_1042#0 GTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATT 197
consensus_1042#1 GTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACG------- 233
*****************************************************
consensus_1042#0 GCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATT 257
consensus_1042#1 ------------------------------------------------------------
consensus_1042#0 TGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCA 317
consensus_1042#1 ------------------------------------------------------------
consensus_1042#0 ATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAA 377
consensus_1042#1 ---------------------------------------------------------GAA 236
***
consensus_1042#0 GGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCT 437
consensus_1042#1 GGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCT 296
************************************************************
consensus_1042#0 TCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTG 497
consensus_1042#1 TCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTG 356
**** ******************************************************
consensus_1042#0 CAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA-- 555
consensus_1042#1 CAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACA 416
**********************************************************
consensus_1042#0 -----------------------------------------------------------
consensus_1042#1 ACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA 475
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |