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Apis mellifera
cluster # 105 cluster # 105       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_105#0 length = 595 sequences # 6  
 consensus_105#1 length = 206 sequences # 1  
consensusID : consensus_105#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 595
fasta sequence 
                              [CGGACGGTGTAAAACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAAAGCGAAAGATATTGAAGAAAAAAAA]

[+] EMBL BI509934             [CGGACGGTGTAAAACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGTGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCG                                                           ]
[+] EMBL BI504214             [             ACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAA                         ]
[+] EMBL BI508220             [             ACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACA                          ]
[+] EMBL BI504412             [                   TGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAA                         ]
[+] EMBL BI504234             [                             GAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAAAGCGAAAGATATTGAAGAAAAAAAA]
[+] EMBL BI508322             [                                                                CCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAA                                                                                                                                                                ]




>consensus_105#0
CGGACGGTGTAAAACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCAT
GCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACA
AGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAA
CTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATC
TTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGA
AGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGC
TAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAG
TTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACA
AAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGA
AGAACATAGCGCCCATGATGTACGCGACAAAGCGAAAGATATTGAAGAAAAAAAA

consensusID : consensus_105#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence 
                              [AGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGTGCATATTTTTCAGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAGTTGC]

[+] EMBL BI503305             [AGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGTGCATATTTTTCAGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAGTTGC]




>consensus_105#1
AGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAA
ATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAA
ATCAACATGAATGTGACCTTCTAGAAGATATACGTGCATATTTTTCAGCAACTTTACAAT
AAAGAAGTCTGCAATTGAAAAGTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_105#0      CGGACGGTGTAAAACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCAT 60
consensus_105#1      -----------------------AGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCAT 37
                                            *************************************

consensus_105#0      GCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACA 120
consensus_105#1      GCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACA 97
                     ************************************************************

consensus_105#0      AGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACG--- 177
consensus_105#1      AGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGTGC 157
                     *********************************************************   

consensus_105#0      -----------CAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCA 226
consensus_105#1      ATATTTTTCAGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAGTTGC----------- 206
                                ********************************* * *            

consensus_105#0      CTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAA 286
consensus_105#1      ------------------------------------------------------------
                                                                                 

consensus_105#0      GTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAA 346
consensus_105#1      ------------------------------------------------------------
                                                                                 

consensus_105#0      AATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCT 406
consensus_105#1      ------------------------------------------------------------
                                                                                 

consensus_105#0      GACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAA 466
consensus_105#1      ------------------------------------------------------------
                                                                                 

consensus_105#0      TTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAA 526
consensus_105#1      ------------------------------------------------------------
                                                                                 

consensus_105#0      TTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAAAGCGAAAGATATTGAA 586
consensus_105#1      ------------------------------------------------------------
                                                                                 

consensus_105#0      GAAAAAAAA 595
consensus_105#1      ---------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)