These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 612 fasta sequence [AGTGTGTCGTTAGGAAGTCGCAATATAGAAATTAAACGGAATATTTTATTTTCCTCAGAATTTATTTTAAATCATTTTGTGCATTAAAAACAGACAAAACAAATCAAAAAAATTTATTCGAATGTGCGTAAAGAATAAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAATAAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGTGTTCGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAATGGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAAGGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGCTTTTAGGATAAGA] [+] EMBL BI506329 [AGTGTGTCGTTAGGAAGTCGCAATATAGAAATTAAACGGAATATTTTATTTTCCTCAGAATTTATTTTAAATCATTTTGTGCATTAAAAACAGACAAAACAAATCAAAAAAATTTATTCGAATGTGCGTAAAGAATAAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAATAAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGTGTTCGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAATGGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAAGGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCA ] [+] EMBL BI504639 [ AAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAATAAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGTGTTCGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAATGGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAAGGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGCTTTTAGGATAAGA] consensusID : consensus_1050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [AACCGGAAAAAAAAGAAGAATGTGTAAGTGAAAATGTGCTTGCTGATATAGAGAAAAAGGAACGAATCAGTGCAACAGAAACTGGAGAATCTGAATTTGAATCAGAAGTTGAGGTATCTCCAGTAAAAAGTTTCAAATCAGTAAAACAGGAAGTGAAAAGAGAACCAGTGGAAGAAGTGGAAATTGCACCGAAGGAGATATTTAGTAGTATGGGAATAGACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGAGGATAAGAAG] [+] EMBL BI504787 [AACCGGAAAAAAAAGAAGAATGTGTAAGTGAAAATGTGCTTGCTGATATAGAGAAAAAGGAACGAATCAGTGCAACAGAAACTGGAGAATCTGAATTTGAATCAGAAGTTGAGGTATCTCCAGTAAAAAGTTTCAAATCAGTAAAACAGGAAGTGAAAAGAGAACCAGTGGAAGAAGTGGAAATTGCACCGAAGGAGATATTTAGTAGTATGGGAATAGACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGAGGATAAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1050#0 AGTGTGTCGTTAGGAAGTCGCAATATAGAAATTAAACGGAATATTTTATTTTCCTCAGAA 60 consensus_1050#1 ------------------------------------------------------------ consensus_1050#0 TTTATTTTAAATCATTTTGTGCATTAAAAACAGACAAAACAAATCAAAAAAATTTATTCG 120 consensus_1050#1 ------------------------------------------------------------ consensus_1050#0 AATGTGCGTAAAGAATAAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAAT 180 consensus_1050#1 ----------------------------------------------AACCGGAAAAAAAA 14 * * ***** consensus_1050#0 AAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGT 240 consensus_1050#1 GAAGAATGTGTAAGTGAAAATGTGC---TTGCTGATATAGAGAAAAAGGAACGAATCAGT 71 **** * ** * **** ** * **** *** * ** ** *** consensus_1050#0 GTT-CGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAAT 299 consensus_1050#1 GCAACAGAAACTGGAGAATCTGAATT----TGAATCA-GAAGTTGAGGTATCTCCAGTAA 126 * * * * * ** ** **** * * *** * * ** * consensus_1050#0 GGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAA 359 consensus_1050#1 AAAGTTT-CAAATCA---GTAAAACAGGAAGTGAAAAGAGAAC-------CAG--TGGAA 173 ** ** ** ** ***** ***** * * * ** ** consensus_1050#0 GGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATA 419 consensus_1050#1 GAAGTGGAA----ATTGCA-CCGAAGGAGATATTT--------AGTAGTATGGGAATAGA 220 * * * *** * ** * ** ** ** * ** * * * * * consensus_1050#0 CGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGA 479 consensus_1050#1 CGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGA 280 ************************************************************ consensus_1050#0 TCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTA 539 consensus_1050#1 TCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTA 340 ************************************************************ consensus_1050#0 CTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGC 599 consensus_1050#1 CTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTG- 399 *********************************************************** consensus_1050#0 TTTTAGGATAAGA-- 612 consensus_1050#1 ----AGGATAAGAAG 410 ********* |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |