These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTATCAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTTGTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTCAGTAGGGCGAGAGTCTCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAATATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTTTGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAAAATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT] [+] EMBL BI505861 [TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTATCAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTTGTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTC ] [+] EMBL BI514633 [ CTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTCAGTAGGGCGAGAGTCTCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAATATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTTTGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAAAATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT] consensusID : consensus_1054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTCCAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAATAATCCACCAACTCCTGGATCTCAAAGAAGTGGCAGTACAAATCCAGAAGGGGATCTTCAAAATTTATTGAATAATATGTCACAACAACAATTAATGCAGTTATTTGGTGGTGTAGGTCAAATTGGTTTAGGTAGTTTATTGGGTACAATGAATAGACCTCAAGGTGTGCAAAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAATACTTCAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTAAAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAACAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTCCAACAACTACAGGAACAGAATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCATCCGTCAATTTGGCTTGGGCCCA] [+] EMBL BI509269 [GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTCCAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAATAATCCACCAACTCCTGGATCTCAAAGAAGTGGCAGTACAAATCCAGAAGGGGATCTTCAAAATTTATTGAATAATATGTCACAACAACAATTAATGCAGTTATTTGGTGGTGTAGGTCAAATTGGTTTAGGTAGTTTATTGGGTACAATGAATAGACCTCAAGGTGTGCAAAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAATACTTCAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTAAAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAACAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTCCAACAACTACAGGAACAGAATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCATCCGTCAATTTGGCTTGGGCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1054#0 TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTA----T 56 consensus_1054#1 ----GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTC 56 * *** * * * * ** * ** * ** ** * *** ** consensus_1054#0 CAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTT 116 consensus_1054#1 CAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAAT 116 ***** * * * ** * **** * * * * * * * consensus_1054#0 GTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCAC 176 consensus_1054#1 AATCC-ACCAACTCCTGGATCTCAAAGAAGTGGCAGT-ACAAATCCAGAAGGGGATCTTC 174 ** * *** * * * * ****** ** *** * * * ** * consensus_1054#0 TGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCT 236 consensus_1054#1 AAAATTTA--TTGAATAATAT---GTCACAACAACAATTAATG-----CAGTTATTTGGT 224 * * * * * ** * * *** **** * * *** * * consensus_1054#0 GGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTA 296 consensus_1054#1 GGTGTAGGT-CAAATTGGTTTAGGTAGTTTAT------TGGGTACAATGAATAGACCTCA 277 ** * * **** * ** ** ** **** * ** **** * consensus_1054#0 GCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTT 356 consensus_1054#1 AGGTG-TGCA-AAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAAT 335 *** * ** * ** * ** * * *** * * * * * * consensus_1054#0 CCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCC 416 consensus_1054#1 ACTT--CAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTA 393 * * ** * * ** **** ** ** ***** * consensus_1054#0 GGACAATAAGCTGTGCTGTAG-GTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCC 475 consensus_1054#1 AAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAA 453 ** * * * * * * * **** ** *** * * * ** consensus_1054#0 CAACTGCTCAGTAGGGCGAGAGTC--TCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAA 533 consensus_1054#1 CAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTC 513 **** * * * * ** **** ** * * *** consensus_1054#0 TATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTT 593 consensus_1054#1 CAACAACTACAGGAACAG--AATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCA--TC 569 * ** ** * ** * * * *** * * * ** * * * * * consensus_1054#0 TGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAA 653 consensus_1054#1 CGTCAATTTGGCTTGGGCCCA--------------------------------------- 590 **** *** * * * consensus_1054#0 AATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT 696 consensus_1054#1 ------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |