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Apis mellifera
cluster # 1054 cluster # 1054       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1054#0 length = 696 sequences # 2  
consensus_1054#1 length = 590 sequences # 1  

consensusID : consensus_1054#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 696
fasta sequence
                              [TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTATCAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTTGTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTCAGTAGGGCGAGAGTCTCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAATATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTTTGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAAAATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT]

[+] EMBL BI505861             [TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTATCAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTTGTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTC                                                                                                                                                                                                                    ]
[+] EMBL BI514633             [                                                                                                                                         CTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTCAGTAGGGCGAGAGTCTCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAATATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTTTGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAAAATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT]


>consensus_1054#0 TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTATCAGG ACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTTGTTC TTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGC TGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCC TGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGT GGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGT TGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGAC AATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACT GCTCAGTAGGGCGAGAGTCTCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAATATTAAA TAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTTTGTCACT TTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAAAATTTAT ACGTTACACAGCTAAAATTTAAAATTTATAATACTT



consensusID : consensus_1054#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence
                              [GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTCCAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAATAATCCACCAACTCCTGGATCTCAAAGAAGTGGCAGTACAAATCCAGAAGGGGATCTTCAAAATTTATTGAATAATATGTCACAACAACAATTAATGCAGTTATTTGGTGGTGTAGGTCAAATTGGTTTAGGTAGTTTATTGGGTACAATGAATAGACCTCAAGGTGTGCAAAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAATACTTCAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTAAAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAACAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTCCAACAACTACAGGAACAGAATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCATCCGTCAATTTGGCTTGGGCCCA]

[+] EMBL BI509269             [GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTCCAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAATAATCCACCAACTCCTGGATCTCAAAGAAGTGGCAGTACAAATCCAGAAGGGGATCTTCAAAATTTATTGAATAATATGTCACAACAACAATTAATGCAGTTATTTGGTGGTGTAGGTCAAATTGGTTTAGGTAGTTTATTGGGTACAATGAATAGACCTCAAGGTGTGCAAAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAATACTTCAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTAAAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAACAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTCCAACAACTACAGGAACAGAATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCATCCGTCAATTTGGCTTGGGCCCA]


>consensus_1054#1 GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTCCAGG ATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAATAATC CACCAACTCCTGGATCTCAAAGAAGTGGCAGTACAAATCCAGAAGGGGATCTTCAAAATT TATTGAATAATATGTCACAACAACAATTAATGCAGTTATTTGGTGGTGTAGGTCAAATTG GTTTAGGTAGTTTATTGGGTACAATGAATAGACCTCAAGGTGTGCAAAGTACTAGAGCTT CTACAACAACAGCATCAACTCGAGTTACTACAAATACTTCAAGACCTACTACACAAATGG TATCTTCATCAGCATCTGCTAATGATTCTCCTAAAACTAATGGTGATAATAAATCATCAT CACGAACATCAGATACATCAACATCTGGATCAACAACAAATACAAATAATAAAATTCAAC TTAGTGATTTACAAAACTTTTTATCAGAAATTCCAACAACTACAGGAACAGAATCTGTTG TTCAGTCAGGCCAGGCGGGACCTGTCATCCGTCAATTTGGCTTGGGCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1054#0      TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTA----T 56
consensus_1054#1      ----GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTC 56
                           *    *** * *  *   * ** * ** * ** **  *     *** **      

consensus_1054#0      CAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTT 116
consensus_1054#1      CAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAAT 116
                      *****    *     *   *   **   * **** * *      *      * * *   *

consensus_1054#0      GTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCAC 176
consensus_1054#1      AATCC-ACCAACTCCTGGATCTCAAAGAAGTGGCAGT-ACAAATCCAGAAGGGGATCTTC 174
                        **    * ***  * * *    *      ****** ** *** *   *  *  **  *

consensus_1054#0      TGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCT 236
consensus_1054#1      AAAATTTA--TTGAATAATAT---GTCACAACAACAATTAATG-----CAGTTATTTGGT 224
                          *  *   *  * *  **   * * ***    **** * *     *** *      *

consensus_1054#0      GGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTA 296
consensus_1054#1      GGTGTAGGT-CAAATTGGTTTAGGTAGTTTAT------TGGGTACAATGAATAGACCTCA 277
                      **  *   * ****   *   **    ** **      ****   * **   ****   *

consensus_1054#0      GCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTT 356
consensus_1054#1      AGGTG-TGCA-AAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAAT 335
                        *** * ** * **  *           **   * *  ***   *  * * * *    *

consensus_1054#0      CCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCC 416
consensus_1054#1      ACTT--CAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTA 393
                       * *  **  *    *  **   **** **         **  ***** *          

consensus_1054#0      GGACAATAAGCTGTGCTGTAG-GTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCC 475
consensus_1054#1      AAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAA 453
                        ** *   *   *  *  *   *   *   **** ** ***   * * *      **  

consensus_1054#0      CAACTGCTCAGTAGGGCGAGAGTC--TCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAA 533
consensus_1054#1      CAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTC 513
                      ****   *    *     * * **               **** **  * *   ***   

consensus_1054#0      TATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTT 593
consensus_1054#1      CAACAACTACAGGAACAG--AATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCA--TC 569
                       *  ** **  * ** *   *  *   ***    * *    *  ** *   * * *  * 

consensus_1054#0      TGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAA 653
consensus_1054#1      CGTCAATTTGGCTTGGGCCCA--------------------------------------- 590
                       **** ***   * * *                                           

consensus_1054#0      AATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT 696
consensus_1054#1      -------------------------------------------
                                                                 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)