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Apis mellifera
cluster # 106 cluster # 106       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_106#0 length = 798 sequences # 4  
 consensus_106#1 length = 340 sequences # 3  
consensusID : consensus_106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 798
fasta sequence 
                              [TAAAATAGTCAGTGCGTTTTTTTTTTTTTTTTTTTTTTTTACGTACCGCAATCGCGGTCAATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATA-CTACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAAAAAAAAAAAAAAAAAAAACAAANNGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAATATTGTCATCGACAGGCTCGTCAGAGATGCGTTGTGGAATTTACAAGTAAACAATCGATAGATCACGAAGNACTTCTCCTTGCTACCGTAGGTAAAAATCGTACTTTCCTTAACGAATGGTCTAACCCTTCGAAAATGTCTTTTCTTTATCGTTTATCGATATATAAATGTGTGTAATCGTAGAACCACGCAGAAAACAAACTTTCGGTCTTCTTTTATTTTTCATCATTATCATTATAACGATCTTGAGAAAAAAATGTCGCCTCGAATTTGAAACGATTCGGTTCGAACGCAAAGCGACACATTATTATTATTCATTATTATTATTATTATTAATACTATATAAATCGATTATTGAAGNGCGAATGAAAAATGGCGTCGAATTTTTCGCTGCATGATTCCATGACCACCATTGGATTTCCTTGGTATAGAAATAAAACAAC]

[+] EMBL BI507186             [TAAAATAGTCAGTGCGTTTTTTTTTTTTTTTTTTTTTTTTACGTACCGCAATCGCGGTCAAACCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATANNNACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI509196             [                                                        GTCAATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATA CTACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAAAAAAAAAAAAAAAAAAAACAAANNGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAATATTGTCATCGACAGGCTCGTCAGAGATGCGTTGTGGAATTTACAAGTAAACAATCGATAGATCACGAAGNACTTCTCCTTGCTACCGTAGGTAAAAATCGTACTTTCCTTAACGAATGGTCTAACCCTTCGAAAATGTCTTTTCTTTATCGTT                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI503795             [                                                             TCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATA CTACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAAAAAAAAAAAAAAAAAAAACAAANNGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAATATTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI509688             [                                                                                                                                                                                                                              AATTAATCCCATTTAATAGAAAACCG AAAAAAAAAAAAAAAAAAACAAAATGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAATATTGTCATCGACAGGCTCGTCAGAGATGCGTTGTGGAATTTACAAGTAAACAATCGATAGATCACGAAGAACTTCTCCTTGCTACCGTAGGTAAAAATCGTACTTTCCTTAACGAATGGTCTAACCCTTCGAAAATGTCTTTTCTTTATCGTTTATCGATATATAAATGTGTGTAATCGTAGAACCACGCAGAAAACAAACTTTCGGTCTTCTTTTATTTTTCATCATTATCATTATAACGATCTTGAGAAAAAAATGTCGCCTCGAATTTGAAACGATTCGGTTCGAACGCAAAGCGACACATTATTATTATTCATTATTATTATTATTATTAATACTATATAAATCGATTATTGAAGNGCGAATGAAAAATGGCGTCGAATTTTTCGCTGCATGATTCCATGACCACCATTGGATTTCCTTGGTATAGAAATAAAACAAC]




>consensus_106#0
TAAAATAGTCAGTGCGTTTTTTTTTTTTTTTTTTTTTTTTACGTACCGCAATCGCGGTCA
ATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATACTACTT
TTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTT
TATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAG
AAAACCGAAAAAAAAAAAAAAAAAAAACAAANNGACATTATATTTTTTATGGTCGCGCAT
CGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAATATTG
TCATCGACAGGCTCGTCAGAGATGCGTTGTGGAATTTACAAGTAAACAATCGATAGATCA
CGAAGNACTTCTCCTTGCTACCGTAGGTAAAAATCGTACTTTCCTTAACGAATGGTCTAA
CCCTTCGAAAATGTCTTTTCTTTATCGTTTATCGATATATAAATGTGTGTAATCGTAGAA
CCACGCAGAAAACAAACTTTCGGTCTTCTTTTATTTTTCATCATTATCATTATAACGATC
TTGAGAAAAAAATGTCGCCTCGAATTTGAAACGATTCGGTTCGAACGCAAAGCGACACAT
TATTATTATTCATTATTATTATTATTATTAATACTATATAAATCGATTATTGAAGNGCGA
ATGAAAAATGGCGTCGAATTTTTCGCTGCATGATTCCATGACCACCATTGGATTTCCTTG
GTATAGAAATAAAACAAC

consensusID : consensus_106#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 340
fasta sequence 
                              [TTTTTTTTTTTTTTACGTACCGCAATCGCGGTCAATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATACTACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAAAAAAAAAAAAAAAAAAACAAAATGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAAAAAGCAACGCGG]

[-] EMBL BI506540             [TTTTTTTTTTTTTTACGTACCGCAATCGCGGTCAATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATACTACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAAAAAAAAAAAAAAAAAAACAAAATGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAAAAAGCAACGCGG]
[+] EMBL BI504004             [                              GTCAATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATACTACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAAAAAAAAA                                                                                                              ]
[+] EMBL BI508578             [                                     CATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGNTTGACACGGATACTACTTTTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGANNNAAAAAAAAAAAAAAACAAAATGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCA                                         ]




>consensus_106#1
TTTTTTTTTTTTTTACGTACCGCAATCGCGGTCAATCCATTTCCCCTACATTTTATAATT
TTAGCCGCACATCAGATTGACACGGATACTACTTTTTATCATAATGCGTAAAATTTTTGT
GCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTTTATCATATTTTTTTACGAGCTCTACG
ATTAATCTTCCGCCAAATTAATCCCATTTAATAGAAAACCGAAAAAAAAAAAAAAAAAAA
CAAAATGACATTATATTTTTTATGGTCGCGCATCGCGCTGGTGTACGGCTGGACTTTCAC
GAGCAGCAGCAGGAAGAAGGATAAAAAAAAAGCAACGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_106#0      TAAAATAGTCAGTGCGTTTTTTTTTTTTTTTTTTTTTTTTACGTACCGCAATCGCGGTCA 60
consensus_106#1      --------------------------TTTTTTTTTTTTTTACGTACCGCAATCGCGGTCA 34
                                               **********************************

consensus_106#0      ATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATACTACTT 120
consensus_106#1      ATCCATTTCCCCTACATTTTATAATTTTAGCCGCACATCAGATTGACACGGATACTACTT 94
                     ************************************************************

consensus_106#0      TTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTT 180
consensus_106#1      TTTATCATAATGCGTAAAATTTTTGTGCAATTCGTTTGATGTCCCCGTTTCCTTTTTTTT 154
                     ************************************************************

consensus_106#0      TATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAG 240
consensus_106#1      TATCATATTTTTTTACGAGCTCTACGATTAATCTTCCGCCAAATTAATCCCATTTAATAG 214
                     ************************************************************

consensus_106#0      AAAACCGAAAAAAAAAAAAAAAAAAAACAAANNGACATTATATTTTTTATGGTCGCGCAT 300
consensus_106#1      AAAACCGAAAAAAAAAAAAAAAAAAA-CAAAATGACATTATATTTTTTATGGTCGCGCAT 273
                     ************************** ****  ***************************

consensus_106#0      CGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAATATTG 360
consensus_106#1      CGCGCTGGTGTACGGCTGGACTTTCACGAGCAGCAGCAGGAAGAAGGATAAAAAAAA--A 331
                     ******************************************************* *   

consensus_106#0      TCATCGACAGGCTCGTCAGAGATGCGTTGTGGAATTTACAAGTAAACAATCGATAGATCA 420
consensus_106#1      GCAACG-CGG-------------------------------------------------- 340
                      ** ** * *                                                  

consensus_106#0      CGAAGNACTTCTCCTTGCTACCGTAGGTAAAAATCGTACTTTCCTTAACGAATGGTCTAA 480
consensus_106#1      ------------------------------------------------------------
                                                                                 

consensus_106#0      CCCTTCGAAAATGTCTTTTCTTTATCGTTTATCGATATATAAATGTGTGTAATCGTAGAA 540
consensus_106#1      ------------------------------------------------------------
                                                                                 

consensus_106#0      CCACGCAGAAAACAAACTTTCGGTCTTCTTTTATTTTTCATCATTATCATTATAACGATC 600
consensus_106#1      ------------------------------------------------------------
                                                                                 

consensus_106#0      TTGAGAAAAAAATGTCGCCTCGAATTTGAAACGATTCGGTTCGAACGCAAAGCGACACAT 660
consensus_106#1      ------------------------------------------------------------
                                                                                 

consensus_106#0      TATTATTATTCATTATTATTATTATTATTAATACTATATAAATCGATTATTGAAGNGCGA 720
consensus_106#1      ------------------------------------------------------------
                                                                                 

consensus_106#0      ATGAAAAATGGCGTCGAATTTTTCGCTGCATGATTCCATGACCACCATTGGATTTCCTTG 780
consensus_106#1      ------------------------------------------------------------
                                                                                 

consensus_106#0      GTATAGAAATAAAACAAC 798
consensus_106#1      ------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)