These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 902 fasta sequence [CCTCATCTTCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTCTTTTGATGGAACGTCTTTCTGTAGACTATGGCAAGAAATCAAAGTTGGAATTTGCTATTTATCCTGCTCCACAAGTTTCTACTGCAGTTGTTGAACCATATAATTCAATTCTCACCACACATACCACTCTTGAACATTCCGATTGCGCATTTATGGTTGACAATGAAGCCATTTACGATATTTGTCGTCGTAATTTAGACATCGAAAGACCTACCTATACTAATTTAAATCGACTAATTGGCCAAATTGTATCCTCTATTACAGCTTCTTTGCGATTTGACGGTGCATTGAACGTTGATTTGACTGAATTCCAGACAAACTTAGTACCTTATCCCAGAATTCATTTCCCCTTGGTAACTTATGCACCTGTTATTTCTGCAGAGAAGGCATATCATGAACAACTCTCTGTATCAGAGATTACGAATGCGTGTTTTGAACCAGCAAACCAAATGGTGAAATGTGATCCTCGCCATGGAAAATACATGGCCTGCTGTATGTTGTATAGNNNTGATGTTGTACCCAAAGATGTAAATGCAGCAATTGCCACCATAAAAACAAAACGTACTATTCAATTTGTTGATTGGTGCCCAACTGGATTTAAAGTTGGTATTAATTATCAGCCTCCAACTGTGGTACCTGGTGGTGATCTTGCTAAAGTACAACGTGCTGTTTGTATGTTGTCAAACACAACCGCTATTGCGGAAGCTTGGGCTCGTCTTGATCATAAGTTCGATTTGATGTATGCCAAACGTGCATTTGTCCATTGGTACGTTGGTGAAGGTATGGAAGAAGNNGAATTTTCCGAAGCACGTGAAGATCTAGCAGCTCTTGAAAAAGATTATGAAGAAGTCG] [+] EMBL BI509027 [CCTCATCTTCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTCTTTTGATGGAACGTCTTTCTGTAGACTATGGCAAGAAATCAAAGTTGGAATTTGCTATTTATCCTGCTCCACAAGTTTCTACTGCAGTTGTTGAACCATATAATTCAATTCTCACCACACATACCACTCTTGAACATTCCGATTGCGCATTTATGGTTGACAATGAAGCCATTTACGATATTTGTCGTCGTAATTTAGACATCGAAAGACCTACCTATACTAATTTAAATCGACTAATTGGCCAAATTGTATCCTCTATTACAGCTTCTTTGCGATTTGATGGTGCATTGAACGTTGATTTGACTGAATTCCAGACAAACTTAGTACCTTATCCCAGAATTCATTTCCCCTTGGTAACTTATGCACCTGTTATTTCTGCAGAGAAGGCATATCATGAACAACTCTCTGTATCAGAGATTACGAATGCGTGTTTTGAACCAGCAAACCAAATGGTGAAATGTGATCCTCGCCATGGAAAATACATGGC ] [+] EMBL BI506790 [ TCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTCTTTTGATGGAACGTCTTTCTGTAGACTATGGCAAGAAATCAAAGTTGGAATTTGCTATTTATCCTGCTCCACAAGTTTCTACTGCAGTTGTTGAACCATATAATTCAATTCTCACCACACATACCACTCTTGAACATTCCGATTGCGCATTTATGGTTGACAATGAAGCCATTTACGATATTTGTCGTCGTAATTTAGACATCGAAAGACCTACCTATACTAATTTAAATCGACTAATTGGCCAAATTGTATCCTCTATTACAGCTTCTTTGCGATTTGACGGTGCATTGAACGTTGATTTGACTGAATTCCAGACAAACTTAGTACCTTATCCCAGAATTCATTTCCCCTTGGTAACTTATGCACCTGTTATTTCTGCAGAGAAGGCATATCATGAACAACTCTCTGTATCAGAGATTACGAATGCGTGTTTTGAACCAGCAAACCAAATGGTGAAATGTGATCCTCGCCATGGAAAATACATGGCCTGCTGTATGTTGTATAGNNNTGATGTTGTACCCAAAGATGTAAATGCAGCAATTGCCACCATAAAAACAAAACGTACTATTCAATTTGTTGATTGGTGCCCAACTGGAT ] [+] EMBL BI507674 [ TGACGGTGCATTGAACGTTGATTTGACTGAATTCCAGACAAACTTAGTACCTTATCCCAGAATTCATTTCCCCTTGGTAACTTATGCACCTGTTATTTCTGCAGAGAAGGCATATCATGAACAACTCTCTGTATCAGAGATTACGAATGCGTGTTTTGAACCAGCAAACCAAATGGTGAAATGTGATCCTCGCCATGGAAAATACATGGCCTGCTGTATGTTGTATAGAGGTGATGTTGTACCCAAAGATGTAAATGCAGCAATTGCCACCATAAAAACAAAACGTACTATTCAATTTGTTGATTGGTGCCCAACTGGATTTAAAGTTGGTATTAATTATCAGCCTCCAACTGTGGTACCTGGTGGTGATCTTGCTAAAGTACAACGTGCTGTTTGTATGTTGTCAAACACAACCGCTATTGCGGAAGCTTGGGCTCGTCTTGATCATAAGTTCGATTTGATGTATGCCAAACGTGCATTTGTCCATTGGTACGTTGGTGAAGGTATGGAAGAAGNNGAATTTTCCGAAGCACGTGAAGATCTAGCAGCTCTTGAAAAAGATTATGAAGAAGTCG] consensusID : consensus_108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 591 fasta sequence [GCTTTAGCCAACTATCTATCATCCTACGTCCAATTTTTTTACTTCTTTTTTAAGAATTTTGAAAGTTTTCTTTATATTACAAAATGCGTGAATGTATCTCAGTTCATGTTGGACAAGCCGGTGTCCAAATTGGTAATGCGTGTTGGGAATTATATTGTCTAGAACATGGCATCCAACCTGATGGACAAATGCCATCTGACAAAACTATTGGTGGGGGAGATGATAGTTTCAATACGTTTTTTAGTGAAACTGGTGCAGGAAAACATGTACCTAGAGCAGTTTTCATTGATTTGGAACCCACAGTAGTTGATGAAGTACGTACTGGTACTTATCGTCAGCTATTTCATCCAGAACAATTGATTACTGGTAAAGAAGATGCAGCTAACAACTATGCCCGTGGTCATTATACAATTGGGAAAGAAATTGTAGATCTTGTATTAGATAGAATACGTAAATTGGCTGATCAATGTACTGGTCTTCAAGGTTTCCTCATCTTCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTCTTTTGATGGAACGTCTTTCTGTAGACTATGGCAAGACGTTCCATCAAAAAAAAA] [+] EMBL BI507118 [GCTTTAGCCAACTATCTATCATCCTACGTCCAATTTTTTTACTTCTTTTTTAAGAATTTTGAAAGTTTTCTTTATATTACAAAATGCGTGAATGTATCTCAGTTCATGTTGGACAAGCCGGTGTCCAAATTGGTAATGCGTGTTGGGAATTATATTGTCTAGAACATGGCATCCAACCTGATGGACAAATGCCATCTGACAAAACTATTGGTGGGGGAGATGATAGTTTCAATACGTTTTTTAGTGAAACTGGTGCAGGAAAACATGTACCTAGAGCAGTTTTCATTGATTTGGAACCCACAGTAGTTGATGAAGTACGTACTGGTACTTATCGTCAGCTATTTCATCCAGAACAATTGATTACTGGTAAAGAAGATGCAGCTAACAACTATGCCCGTGGTCATTATACAATTGGGAAAGAAATTGTAGATCTTGTATTAGATAGAATACGTAAATTGGCTGATCAATGTACTGGTCTTCAAGGTTTCCTCATCTTCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTCTTTTGAT ] [+] EMBL BI507496 [ TTTCTTTATATTACAAAATGCGTGAATGTATCTCAGTTCATGTTGGACAAGCCGGTGTCCAAATTGGTAATGCGTGTTGGGAATTATATTGTCTAGAACATGGCATCCAACCTGATGGACAAATGCCATCTGACAAAACTATTGGTGGGGGAGATGATAGTTTCAATACGTTTTTTAGTGAAACTGGTGCAGGAAAACATGTACCTAGAGCAGTTTTCATTGATTTGGAACCCACAGTAGTTGATGAAGTACGTACTGGTACTTATCGTCAGCTATTTCATCCAGAACAATTGATTACTGGTAAAGAAGATGCAGCTAACAACTATGCCCGTGGTCATTATACAATTGGGAAAGAAATTGTAGATCTTGTATTAGATAGAATACGTAAATTGGCTGATCAATGTACTGGTCTTCAAGGTT ] [+] EMBL BI503899 [ TTTCTTTATATTACAAAATGCGTGAATGTATCTCAGTTCATGTTGGACAAGCTGGTGTCCAAATTGGTAATGCGTGTTGGGAATTATATTGTCTAGAACATGGCATCCAACCTGATGGACAAATGCCATCTGACAAAACTATTGGTGGGGGAGATGATAGTTTCAATACGTTTTTTAGTGAAACTGGTGCAGGAAAAAAaaaa ] [+] EMBL BI507191 [ TATCTCAGTTCATGTTGGACAAGCCGGTGTCCAAATTGGTAATGCGTGTTGGGAATTATATTGTCTAGAACATGGCATCCAACCTGATGGACAAATGCCATCTGACAAAACTATTGGTGGGGGAGATGATAGTTTCAATACGTTTTTTAGTGAAACTGGTGCAGGAAAACATGTACCTAGAGCAGTTTTCATTGATTTGGAACCCACAGTAGTTGATGAAGTACGTACTGGTACTTATCGTCAGCTATTTCATCCAGAACAATTGATTACTGGTAAAGAAGATGCAGCTAACAACTATGCCCGTGGTCATTATACAATTGGGAAAGAAATTGTAGATCTTGTATTAGATAGAATACGTAAATTGGCTGATCAATGTACTGGTCTTCAAGGTTTCCTCATCTTCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTCTTTTGATGGAACGTCTTTCTGTAGACTATGGCAAGACGTTCCATCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_108#0 CCTCATCTTCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTCTTTTGATGGA 60 consensus_108#1 ------------------------------------------------------------ consensus_108#0 ACGTCTTTCTGTAGACTATGGCAAGAAATCAAAGTTGGAATTTGCTATTTATCCTGCTCC 120 consensus_108#1 ------------------------------------------------------------ consensus_108#0 ACAAGTTTCTACTGCAGTTGTTGAACCATATAATTCAATTCTCACCACACATACCACTCT 180 consensus_108#1 ------------------------------------------------------------ consensus_108#0 TGAACATTCCGATTGCGCATTTATGGTTGACAATGAAGCCATTTACGATATTTGTCGTCG 240 consensus_108#1 ------------------------------------------------------------ consensus_108#0 TAATTTAGACATCGAAAGACCTACCTATACTAATTTAAATCGACTAATTGGCCAAATTGT 300 consensus_108#1 --------------------------------GCTTTAGCCAACTA-TCTATCATCCTAC 27 ** * * **** * ** * consensus_108#0 ATCCTCTATTACAGCTTCTTTGCGATTTGACGGTGCATTGAACGTTGATTTGACTGAATT 360 consensus_108#1 GTCCAATTTTTTTACTTCTTT----TTTAAGAAT--TTTGAAAGT---TTTCTTTATATT 78 *** * ** ******* *** * * ***** ** *** * *** consensus_108#0 CCAGACAAACTTAGTACCTTATCCCAGAATTCAT-TTCCCCTTGGTAACTTATGCACCTG 419 consensus_108#1 ACA---AAATGCGTGAATGTATCTCAG--TTCATGTTGGACAAGCCGGTGTCCAAATTGG 133 ** *** * **** *** ***** ** * * * * * consensus_108#0 TTATTTCTGCAGAGAAGGCATATCATGAACAACTCTCTGTATCAGAGATTACGAATGCGT 479 consensus_108#1 TAATGCGTGTTGGGAAT-TATATTGTCTAGAACAT--GGCATCCAACCTGATGGACAAAT 190 * ** ** * *** **** * * *** * *** * * * * * * consensus_108#0 GTT-TTGAACCAGCAAACCAAATGGTGAAATGTGATCCTCGCCATGGAAAATACATGGCC 538 consensus_108#1 GCCATCTGACAAAACTATTGGTGGGGGAGATGATAGTTTCAATACGTTTTTTAGTGAAAC 250 * * ** * * ** ** *** * ** * * ** * consensus_108#0 TGCTGTATGTTG-TATAGNNNTGATGTTGTACCCAAAGATGTAAATGCAGCAATTGCCAC 597 consensus_108#1 TGGTGCAGGAAAACATGTACCTAGAGCAGTTTTCATTGATTTGGAACCCACAGTAGTTGA 310 ** ** * * ** * * ** ** *** * * * ** * * consensus_108#0 CATAAAAACAAAACGTACTATTCAATTTGTTGATTGGTGCCCAACTGGATTTAAAGTTGG 657 consensus_108#1 TGAAGTACGTACTGGTACTTATCG-TCAGCTATTTCATCCAGAAC--AATTGATTACTGG 367 * * * ***** ** * * * ** * * *** *** * *** consensus_108#0 TATTAATTAT-CAGCCTCCAACTGTGGTACCTGGTGGTGATCTTGCTAAAGTACAACGTG 716 consensus_108#1 TAAAGAAGATGCAGCTAACAACTATG-CCCGTGGTCATTATACAATTGGGAAAGAAATTG 426 ** * ** **** ***** ** * **** * ** * * ** ** consensus_108#0 CTGTTTGTATGTTGTCAAACACAACCGCTATTGCGGAAGCTTGGGCTCGTCTTGATCATA 776 consensus_108#1 TAGATCTTGTATTAGATAGAATACGTAAATTGGCTGATCAATGTACTGGTCTTCAAGGTT 486 * * * * ** * * * * ** ** ** ** ***** * * consensus_108#0 AGTTCGATTTGATGTATGCCAAACGTGCATTTGTCCATTGGTACGTTGGTGAAGGTATGG 836 consensus_108#1 TCCTCATCTTCCATTCTTTTGGAGGTGGTACTGGTTCTGGTTTCACTTCTC----TTTTG 542 ** ** * * * *** ** * * * * * * * * * consensus_108#0 AAGAAGNNGAATTTTCCGAAGCACGTGAAGATCTAGCAGCTCTTGAAAAAGATTATGAAG 896 consensus_108#1 ATGGAACGTCTTTCTGTAGACTATGGCAAGACGTTCCA--TCAAAAAAAAA--------- 591 * * * ** * * * * **** * ** ** ***** consensus_108#0 AAGTCG 902 consensus_108#1 ------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |