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Apis mellifera
cluster # 1091 cluster # 1091       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1091#0 length = 679 sequences # 2  
consensus_1091#1 length = 534 sequences # 1  

consensusID : consensus_1091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence
                              [CAATAAGGAAACGAAGAAGAAGGAAAAGATGAAGAAAAAGTGGTCCTTCAGGTCGATCAGCTTCAGCAAGAAGGATAAGAACAAGCCTGCCCGCGAAGAAGCGCCCAAGAATGGAGACGTCACCAAGGAGGAACCTCTCGCGGAGGGCGGCGAGGAGCAGGAGAACGGATCGGGCACGGCGGGTAGCCCCGTGGAGGAGAAATCAGCGGTGAGCAGTCCGACGACGGAGAACGAGGAGGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAACAGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCACAACCGCCGTCGAGCGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAGCGGAGCCAGCCCGTTGGAGGAAAAGACGGAGGAGGCCGCCGATCCCTCCACCGCCCCGACTCCCGCCCCCTTGGAGGAAAAGAAAGAGGAGGTGGAAAAACTCGAGGCCGAGAAAAAAGCAGTCGAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCT]

[+] EMBL BI512486             [CAATAAGGAAACGAAGAAGAAGGAAAAGATGAAGAAAAAGTGGTCCTTCAGGTCGATCAGCTTCAGCAAGAAGGATAAGAACAAGCCTGCCCGCGAAGAAGCGCCCAAGAATGGAGACGTCACCAAGGAGGAACCTCTCGCGGAGGGCGGCGAGGAGCAGGAGAACGGATCGGGCACGGCGGGTAGCCCCGTGGAGGAGAAATCAGCGGTGAGCAGTCCGACGACGGAGAACGAGGAGGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAACAGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCACAACCGCCGTCGAGCGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAGCGGAGCCAGCCCGTTGG                                                                                                                                                                                                                                                        ]
[+] EMBL BI502784             [                                                                                                                                                                                                                                  GAGAACGAGGAGGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAACAGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCACAACCGCCGTCGAGCGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAGCGGAGCCAGCCCGTTGGAGGAAAAGACGGAGGAGGCCGCCGATCCCTCCACCGCCCCGACTCCCGCCCCCTTGGAGGAAAAGAAAGAGGAGGTGGAAAAACTCGAGGCCGAGAAAAAAGCAGTCGAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCT]


>consensus_1091#0 CAATAAGGAAACGAAGAAGAAGGAAAAGATGAAGAAAAAGTGGTCCTTCAGGTCGATCAG CTTCAGCAAGAAGGATAAGAACAAGCCTGCCCGCGAAGAAGCGCCCAAGAATGGAGACGT CACCAAGGAGGAACCTCTCGCGGAGGGCGGCGAGGAGCAGGAGAACGGATCGGGCACGGC GGGTAGCCCCGTGGAGGAGAAATCAGCGGTGAGCAGTCCGACGACGGAGAACGAGGAGGC GACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAACAGC GGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCACAACCGCCGTCGAGCGC CGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAGCGGAGC CAGCCCGTTGGAGGAAAAGACGGAGGAGGCCGCCGATCCCTCCACCGCCCCGACTCCCGC CCCCTTGGAGGAAAAGAAAGAGGAGGTGGAAAAACTCGAGGCCGAGAAAAAAGCAGTCGA GAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCAC GACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGAT AACCGCCTCTCCGCCATCT



consensusID : consensus_1091#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence
                              [GAATCGGTGTCGATAAGCCTCAATTCGTACAATGAGTCCGACATTGAGTTAAAGGAGAGGTTAGCCGAGTCTCTGGCGGAGACCGAGAAGCAGGAAGAGAGCTTGGTCTCGTGTCAGTTGTTGAACAACGCAACGTCGTCGACCACTGTCCAGGAGACCCATCAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCTGCACCGGCCATCACCGAGGATGTTGCCTCGGTAGCCAAGGCTATCGAAGAAATTGACATAAGCGATAAGGCTGTTGCGGCGGCAACCATCGAGTGTAATACGAATGAAATTATCGCGGAAGCACGTTACCAAAACAACATAAACGAATAAATCGAAACGCTAATCGAATTGTATTTTTGGGAAGAAGAAAGTTCTTTTCTCTCGTTAAAACCAAAAAAAGTATATTATATA]

[+] EMBL BI510814             [GAATCGGTGTCGATAAGCCTCAATTCGTACAATGAGTCCGACATTGAGTTAAAGGAGAGGTTAGCCGAGTCTCTGGCGGAGACCGAGAAGCAGGAAGAGAGCTTGGTCTCGTGTCAGTTGTTGAACAACGCAACGTCGTCGACCACTGTCCAGGAGACCCATCAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCTGCACCGGCCATCACCGAGGATGTTGCCTCGGTAGCCAAGGCTATCGAAGAAATTGACATAAGCGATAAGGCTGTTGCGGCGGCAACCATCGAGTGTAATACGAATGAAATTATCGCGGAAGCACGTTACCAAAACAACATAAACGAATAAATCGAAACGCTAATCGAATTGTATTTTTGGGAAGAAGAAAGTTCTTTTCTCTCGTTAAAACCAAAAAAAGTATATTATATA]


>consensus_1091#1 GAATCGGTGTCGATAAGCCTCAATTCGTACAATGAGTCCGACATTGAGTTAAAGGAGAGG TTAGCCGAGTCTCTGGCGGAGACCGAGAAGCAGGAAGAGAGCTTGGTCTCGTGTCAGTTG TTGAACAACGCAACGTCGTCGACCACTGTCCAGGAGACCCATCAGAGCACCCCGGAACAG CCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACC GAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCA TCTGCACCGGCCATCACCGAGGATGTTGCCTCGGTAGCCAAGGCTATCGAAGAAATTGAC ATAAGCGATAAGGCTGTTGCGGCGGCAACCATCGAGTGTAATACGAATGAAATTATCGCG GAAGCACGTTACCAAAACAACATAAACGAATAAATCGAAACGCTAATCGAATTGTATTTT TGGGAAGAAGAAAGTTCTTTTCTCTCGTTAAAACCAAAAAAAGTATATTATATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1091#0      CAATAAGGAAACGAAGAAGAAGGAAAAGATGAAGAAAAAGTGGTCCTTCAGGTCGATCAG 60
consensus_1091#1      ----------------------GAATCGGTGTCGATAAGCC--TCAATTCGTACAATGAG 36
                                            ***  * **  ** **     **  *  *  * ** **

consensus_1091#0      CTTCAGCAAGAAGGATAAGAACAAGCCTGCCCGCGAAGAAGCGCCCAAGAATGGAGACGT 120
consensus_1091#1      -TCCGACATTGAGTTAAAGGAGAGGTTAGCC----GAGTCTCTGGCGGAGACCGAGAAGC 91
                       * *  **   **   *** * * *   ***     **   *   *    *  **** * 

consensus_1091#0      CACCAAGGAGGAACCTCTCGCGGAGGGCGGCGAGGAGCAGGAGAACGGATCGGGCACGG- 179
consensus_1091#1      AGGAAGAGAGCTTGGTCTCGTGTCAGTTGTTGAACAACGCAACGTCG--TCGACCACTGT 149
                          *  ***     ***** *   *  *  **  * *   *   **  ***  *** * 

consensus_1091#0      -CGGGTAGCCCCGTGGAGGAGAAATCAGCGGTGAGCAGTCCGACGACGGAGAACGAGG-A 237
consensus_1091#1      CCAGGAGACCCATCAGAGCACCCCGGAACAGCCAGAGGCCC--CGGTAGAAAATAACGTG 207
                       * **   ***    *** *      * * *  **  * **  **   ** **  * *  

consensus_1091#0      GGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAAC 297
consensus_1091#1      GGCCACGACGTGAGCA----CGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCC 263
                      *** *** **   **     ** *** *    *  * * * *   *  **   *  *  *

consensus_1091#0      AGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCA-CAACCGCCGTCGA 356
consensus_1091#1      AGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCTGCACCGGCCATCACCGAGGA 323
                      *** *   ***  * ** *  ***  * **  * ** **  * **  * * * ***  **

consensus_1091#0      G--CGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAG 414
consensus_1091#1      TGTTGCCTCGGTAGCCAAGGCTATCGAAGAAATTGACATA--AGCGATAA-GGCTGTT-G 379
                          *** ***   * ***      ** ** *    *  *   ***     *** *   *

consensus_1091#0      CGGAGCCAGCCCGTTGGAGGAAAAGACGGAGGAGGCCGCCGATCCCTCCACCGCCCCGAC 474
consensus_1091#1      CGGCGGCAACCA--TCGAGTGTAATACGAATGAAATTATCG------CGGAAGCACGTTA 431
                      *** * ** **   * ***   ** *** * **      **      *    ** *    

consensus_1091#0      TCCCGCCCCCTTGGAGGAAAAGAAAGAGGAGGTGGAAAAACTCGAGGCCGAGAAAAAAGC 534
consensus_1091#1      CCAAAACAACATAAACGAATAAATCGAAACGCTAATCGAATTGTATTTTTGGGAAGAAGA 491
                       *    *  * *  * *** * *  **   * *     ** *  *      * ** *** 

consensus_1091#0      AGTCGAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGT 594
consensus_1091#1      AAGTTCTTTTCTCTCGTTAAAACCAAAAAAAGTA-TATTATATA---------------- 534
                      *           * **  * * *** *        **  * ***                

consensus_1091#0      GAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGA 654
consensus_1091#1      ------------------------------------------------------------
                                                                                  

consensus_1091#0      AGTGATAACCGCCTCTCCGCCATCT 679
consensus_1091#1      -------------------------
                                               




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)