These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence [TTTTTTTTTTTCATCGTTTTATCTGTCGACTCACCGTAGATCGATTCCGTTTCTTGCGGCCCCGCGCACGCTTAACGCGCCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAGTCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTACATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGAGCGAAAGAACGAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTTTTTCTTCGACTCCGTGTCGTACAAAATTCCGTTAAAAAGGTTAAGGATAATTTATAATCGAGTGAAAAAAAA] [-] EMBL BI502775 [TTTTTTTTTTTCATCGTTTTATCTGTCGACTCACCGTAGATCGATTCCGTTTCTTGCGGCCCCGCGCACGCTTAACGCGCCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAGTCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTACATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGAGCGAAAGAACGAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCA ] [+] EMBL BI504708 [ CCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAGTCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTACATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGAGCGAAAGAACGAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTTTTTCTTCGACTCCGTGTCGTACAAAATTCCGTTAAAAAGGTTAAGGATAATTTATAATCGAGTGAAAAAAAA] consensusID : consensus_1094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTACTGCGATGCAAAGTCACGAACGAACGAGGACCGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAAGGATTCCCCAGTTGTTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTCTTTCTTCGA] [-] EMBL BI505628 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTACTGCGATGCAAAGTCACGAACGAACGAGGACCGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAAGGATTCCCCAGTTGTTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTCTTTCTTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1094#0 TTTTTTTTTTTCATCGTTTTATCTGTCGACTCACCGTAGATCGATTCCGTTTCTTGCGGC 60 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 CCCGCGCACGCTTAACGCGCCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAG 120 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 TCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTA 180 consensus_1094#1 -------------------------------------------------------TTTTT 5 ** * consensus_1094#0 CATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGA-GCGAAAGAAC 239 consensus_1094#1 TTTTTTTTTTTTTTT-----------TTTTTTTTTTTTGGTTACTGCGATGCAAAGTCAC 54 ** ** * *** * * * **** * * *** ** ** ** consensus_1094#0 GAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACAC 299 consensus_1094#1 GAACGAACGAG-GACCGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACAC 113 ********** ** ********************************************* consensus_1094#0 GGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACC 359 consensus_1094#1 GGCGTCCAAGGATTCCCCAGTTGTTTTCTATCGCGATCTGCGCGTATCCACGTTATAACC 173 ******** ************* ************************************* consensus_1094#0 ACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTA 419 consensus_1094#1 ACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTA 233 ************************************************************ consensus_1094#0 GATTTCCATTTTTTTTTTTCTTCGACTCCGTGTCGTACAAAATTCCGTTAAAAAGGTTAA 479 consensus_1094#1 GATTTCCATTTTTTTCTTTCTTCGA----------------------------------- 258 *************** ********* consensus_1094#0 GGATAATTTATAATCGAGTGAAAAAAAA 507 consensus_1094#1 ---------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |