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Apis mellifera
cluster # 1130 cluster # 1130       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1130#0 length = 653 sequences # 2  
consensus_1130#1 length = 285 sequences # 1  

consensusID : consensus_1130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 653
fasta sequence
                              [GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATATACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGCAAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA]

[+] EMBL BI511662             [GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATATACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGAC                                                                                                                                                              ]
[+] EMBL BI516058             [                                                                                               TCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGCAAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA]


>consensus_1130#0 GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATAT ACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAG TCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATA GAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATT AGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTT ATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAA ACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGT GTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGAT ATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAA CTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGC AAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA



consensusID : consensus_1130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence
                              [GCTAAACGGCTACGTGCCTTAATTACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNCAAGCGATCGAAAAATATATATGTATATATATATATTTTATAAAACGATCGATCTATTTTATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTCGTTCTCGAGTTTCTTACGTAAAAAAAA]

[+] EMBL BI507281             [GCTAAACGGCTACGTGCCTTAATTACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNCAAGCGATCGAAAAATATATATGTATATATATATATTTTATAAAACGATCGATCTATTTTATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTCGTTCTCGAGTTTCTTACGTAAAAAAAA]


>consensus_1130#1 GCTAAACGGCTACGTGCCTTAATTACGGCGACGACGAAGAACGGAAAATATGGCCGATGT ACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAA GGAACAATGTGCAATGNNNCAAGCGATCGAAAAATATATATGTATATATATATATTTTAT AAAACGATCGATCTATTTTATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGG ATCAAGAAATCGTGTTTCGTTCTCGAGTTTCTTACGTAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1130#0      GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATAT 60
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      ACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAG 120
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      TCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATA 180
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      GAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATT 240
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      AGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTT 300
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      ATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAA 360
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      ACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGT 420
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      GTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGAT 480
consensus_1130#1      ---------------------------------------GCTAAACGGCTACGTGCCTTA 21
                                                               * * **  **   *     

consensus_1130#0      ATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAA 540
consensus_1130#1      ATT-ACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAA 80
                      **  * *********    *****************************************

consensus_1130#0      CTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGC 600
consensus_1130#1      CTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNC 140
                      **************************************  ****************   *

consensus_1130#0      AAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA------- 653
consensus_1130#1      AAGCGATCGAAAAATATATATGTATATATATATAT--TTTATAAAACGATCGATCTATTT 198
                      ***********************************  ****************       

consensus_1130#0      ------------------------------------------------------------
consensus_1130#1      TATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTC 258
                                                                                  

consensus_1130#0      ---------------------------
consensus_1130#1      GTTCTCGAGTTTCTTACGTAAAAAAAA 285
                                                 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)