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Apis mellifera
cluster # 1133 cluster # 1133       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1133#0 length = 437 sequences # 1  
 consensus_1133#1 length = 422 sequences # 2  
consensusID : consensus_1133#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence 
                              [CCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAATGAACGCGGAAATCGGTTACGAAAGAAGCGACACGCGACAAGATATCGGTATTCCAAGACGCTGCGACGCTGCACCTGTCTTGATCGTGACGAATGCTGCACAAATAAAGGAATGTCGTGATAAAGATCTGAATTGGAAATTCTGATGACGACTTACTATCACTACGTGATCCTCTTTATTGTATGACATGTTCGATACAATAGACTTTAAACTAGTATATGAAAAAACTTACATTAGAATTCATAACATACATTACATTACATTAGAATTTTTCACCATTATATGTAGATCAGTCAATAAGTGCTAA]

[+] EMBL BI516641             [CCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAATGAACGCGGAAATCGGTTACGAAAGAAGCGACACGCGACAAGATATCGGTATTCCAAGACGCTGCGACGCTGCACCTGTCTTGATCGTGACGAATGCTGCACAAATAAAGGAATGTCGTGATAAAGATCTGAATTGGAAATTCTGATGACGACTTACTATCACTACGTGATCCTCTTTATTGTATGACATGTTCGATACAATAGACTTTAAACTAGTATATGAAAAAACTTACATTAGAATTCATAACATACATTACATTACATTAGAATTTTTCACCATTATATGTAGATCAGTCAATAAGTGCTAA]




>consensus_1133#0
CCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTTGGAAA
ACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCT
CCTTTGAAATGAACGCGGAAATCGGTTACGAAAGAAGCGACACGCGACAAGATATCGGTA
TTCCAAGACGCTGCGACGCTGCACCTGTCTTGATCGTGACGAATGCTGCACAAATAAAGG
AATGTCGTGATAAAGATCTGAATTGGAAATTCTGATGACGACTTACTATCACTACGTGAT
CCTCTTTATTGTATGACATGTTCGATACAATAGACTTTAAACTAGTATATGAAAAAACTT
ACATTAGAATTCATAACATACATTACATTACATTAGAATTTTTCACCATTATATGTAGAT
CAGTCAATAAGTGCTAA

consensusID : consensus_1133#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 422
fasta sequence 
                              [CCTCGCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTGGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAAAATGCAACTCACGACGTGTTGCAAATGTTATTCGTTAAAAACGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCAATTATCTCATTGATCTTAATCTTTACTTTAAATGTCGAATGGAAAACAATATTGATCGACATTGTAGACCAAAGCATCGTCAGGATCATTTTTGCGATAAATTTATGCATGACGATTCTGATTTCAACATTGCTTATAGTTGGCGCTCTTAAGAAAAAAACATTTTTAATGCTACCATGGGTAGTTTTGGGTTTAATCTTA]

[+] EMBL BI516646             [CCTCGCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAAAATGCAACTCACGACGTGTTGCAAATGTTATTCGTTAAAAACGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCAATTATCTCATTGATCTTAATCTTTACTTTAAATGTCGAATGGAAAACAATATTGATCGACATTGTAGACCAAAGCATCGTCAGGATCATTTTTGCGATAAATTTATGCATGACGATTCTGATTTCAACATTGCTTATAGTTGGCGCTCTTAAGAAAAAAACATTTTTAATGCTACCATGGGTAGTTTTGGGTTTAATCTTA]
[+] EMBL BI513037             [    GCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTGGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAAAATGCAACTCACGACGTGTTGCAAATGTTATTCGTTAAAAACGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCAATTATCTCATTGATCTTAATCTTTACTTTAAATGTCGAATGGAAAACAATATTGATCGACATTGTAGACCAAAGCATCGTCAGGATCATTTTTGCGATAAATTTATGCATGACGATTCTGATTTCAACATTGCTTATAGTTGGCGCTCTTAAGAAAAAAACATTTTTAATGCTACCATGGGTAGTTT              ]




>consensus_1133#1
CCTCGCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGA
CATTGGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAA
CGAATTTCCTCCTTTGAAAAATGCAACTCACGACGTGTTGCAAATGTTATTCGTTAAAAA
CGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCAATTATCTCATTGATCTTAA
TCTTTACTTTAAATGTCGAATGGAAAACAATATTGATCGACATTGTAGACCAAAGCATCG
TCAGGATCATTTTTGCGATAAATTTATGCATGACGATTCTGATTTCAACATTGCTTATAG
TTGGCGCTCTTAAGAAAAAAACATTTTTAATGCTACCATGGGTAGTTTTGGGTTTAATCT
TA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1133#0      ----------CCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGA 50
consensus_1133#1      CCTCGCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGA 60
                                **************************************************

consensus_1133#0      CATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAA 110
consensus_1133#1      CATTGGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAA 120
                      **** *******************************************************

consensus_1133#0      CGAATTTCCTCCTTTGAAATGAACGCGGAAATCGGTTACGAAAGAAGCGACACGCGACAA 170
consensus_1133#1      CGAATTTCCTCCTTTGAAA--AATGCAACTCACGAC-GTGTTGCAAATGTTATTCGTTAA 177
                      *******************  ** **      **     *    **  *  *  **  **

consensus_1133#0      GATATCGGTATTCCAAGACGCTGCGACGCTGCACCTGTCTTGATCGTGACGAATGCTGCA 230
consensus_1133#1      AAA--CGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCA-----ATTATCTCA 230
                       *   ***          * ***  *   **  * *   ** ***      * *    **

consensus_1133#0      CAAATAAAGGAATGTCGTGATAAAGATCTGAATTGGAAATTCTGATGACGACTTACTATC 290
consensus_1133#1      TTGATCTTA-ATCTTTACTTTAAATGTC-GAATGGAAAAC---AATATTGATCGACATTG 285
                         **     *   *     ****  ** **** * ***     **   **   **  * 

consensus_1133#0      ACTACGTGATCCTCTTTATTGTATGACATGTTCGATACAATAGACTTTAAACTAGTATAT 350
consensus_1133#1      TAGACCAAAGCATCGTCA--GGATCATTTTTGCGATA-AATTTATGCATGACGATTCTGA 342
                         **   * * ** * *  * ** *  * * ***** ***  *      ** * * *  

consensus_1133#0      GAAAAAACTTACATTAGAATTCATAACATACATTACATTACATTAGAATTTTTCACCATT 410
consensus_1133#1      TTTCAACATTGC-TTATAGTTGGCGCTCTTAAGAAAAAAACATT----TTTAATGCTACC 397
                          **  ** * *** * **       *  *  * *  *****    ***    * *  

consensus_1133#0      ATATGTAGATCAGTCAATAAGTGCTAA 437
consensus_1133#1      ATGGGTAGTTTTGGGTTTAA-TCTTA- 422
                      **  **** *  *    *** *  **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)