cluster # 1143

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Apis mellifera
cluster # 1143 cluster # 1143 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1143#0 length = 369 sequences # 1

consensus_1143#1 length = 362 sequences # 1
consensus_1143#2 length = 202 sequences # 1

consensusID : consensus_1143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [TGANTTGATCNGCNNAACGCAAATGACGTTATTGAAGGCAATATCGATGTAGAAGATANAAAAGTTCAATTGTACCTGCCCGGGCGGCCGCTCNACTNCTGCACCTCANGGACGTNAAGAAGAGGTAGTNCTCNTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATAGATATGCCTACGAACTTTCCAATGGTCAGTCTCATCATGAAGTAGCGGAATTAGTTAATGAAGGAACCGAAAATGAGGCTTTAACTGTTCGAGGCACTTATAGTTGGGTAGAACCACAAANCANTACNNTATACACTGTAAATTATGTAGCTGATGAAAATGGTTTCCATCCTGTGGNTGAACATCTTCCTGC]

[+] EMBL BG101645             [TGANTTGATCNGCNNAACGCAAATGACGTTATTGAAGGCAATATCGATGTAGAAGATANAAAAGTTCAATTGTACCTGCCCGGGCGGCCGCTCNACTNCTGCACCTCANGGACGTNAAGAAGAGGTAGTNCTCNTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATAGATATGCCTACGAACTTTCCAATGGTCAGTCTCATCATGAAGTAGCGGAATTAGTTAATGAAGGAACCGAAAATGAGGCTTTAACTGTTCGAGGCACTTATAGTTGGGTAGAACCACAAANCANTACNNTATACACTGTAAATTATGTAGCTGATGAAAATGGTTTCCATCCTGTGGNTGAACATCTTCCTGC]




>consensus_1143#0
TGANTTGATCNGCNNAACGCAAATGACGTTATTGAAGGCAATATCGATGTAGAAGATANA
AAAGTTCAATTGTACCTGCCCGGGCGGCCGCTCNACTNCTGCACCTCANGGACGTNAAGA
AGAGGTAGTNCTCNTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATAGATA
TGCCTACGAACTTTCCAATGGTCAGTCTCATCATGAAGTAGCGGAATTAGTTAATGAAGG
AACCGAAAATGAGGCTTTAACTGTTCGAGGCACTTATAGTTGGGTAGAACCACAAANCAN
TACNNTATACACTGTAAATTATGTAGCTGATGAAAATGGTTTCCATCCTGTGGNTGAACA
TCTTCCTGC

consensusID : consensus_1143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [CTTGTATCGTNTTCGACAATCCAAANAAGTTCCATNNCAAAATAACCCGATCACGAAGCTGTTCATTGCTTTCGCTCTTGTCATTGCCACTGTCTATGCTGCNCCTCAAGGACGTCAAGAAGAGGTAGTACTCGTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATANATATGCCTACGAACTTTCCAATGGTCAGTCTCATCAGGAAGGTAGCGGAATTAGTTAATGAAGGAACCGAAAATGAGGCTTTNNCTGTTCGAGGCAGTTATAGTTGGGTAGAACCACAAAGCAATACAGTATACNCTGTAAATTATGTAGCTNATGAGAATGGTTCCATCCCTGTGGGTGAACNT]

[+] EMBL BG101555             [CTTGTATCGTNTTCGACAATCCAAANAAGTTCCATNNCAAAATAACCCGATCACGAAGCTGTTCATTGCTTTCGCTCTTGTCATTGCCACTGTCTATGCTGCNCCTCAAGGACGTCAAGAAGAGGTAGTACTCGTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATANATATGCCTACGAACTTTCCAATGGTCAGTCTCATCAGGAAGGTAGCGGAATTAGTTAATGAAGGAACCGAAAATGAGGCTTTNNCTGTTCGAGGCAGTTATAGTTGGGTAGAACCACAAAGCAATACAGTATACNCTGTAAATTATGTAGCTNATGAGAATGGTTCCATCCCTGTGGGTGAACNT]




>consensus_1143#1
CTTGTATCGTNTTCGACAATCCAAANAAGTTCCATNNCAAAATAACCCGATCACGAAGCT
GTTCATTGCTTTCGCTCTTGTCATTGCCACTGTCTATGCTGCNCCTCAAGGACGTCAAGA
AGAGGTAGTACTCGTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATANATA
TGCCTACGAACTTTCCAATGGTCAGTCTCATCAGGAAGGTAGCGGAATTAGTTAATGAAG
GAACCGAAAATGAGGCTTTNNCTGTTCGAGGCAGTTATAGTTGGGTAGAACCACAAAGCA
ATACAGTATACNCTGTAAATTATGTAGCTNATGAGAATGGTTCCATCCCTGTGGGTGAAC
NT

consensusID : consensus_1143#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [GTTGAATTTTTATTTCTGAAATCAACTTATTAAAAATGAAAACTATCGTGCTTATTTTCGGCTTTTGCGTTTGCGTTGGTGCTCTGACAATCGAAGAATTAAAAACTAGATTGCATACTGAGCAATCAGTTTGCAAAACAGAAACTGGCATTGATCAGCAAAAAGCAAATGACGTTATTGAAGGCAATATCGATGTAGAAGA]

[+] EMBL BG101663             [GTTGAATTTTTATTTCTGAAATCAACTTATTAAAAATGAAAACTATCGTGCTTATTTTCGGCTTTTGCGTTTGCGTTGGTGCTCTGACAATCGAAGAATTAAAAACTAGATTGCATACTGAGCAATCAGTTTGCAAAACAGAAACTGGCATTGATCAGCAAAAAGCAAATGACGTTATTGAAGGCAATATCGATGTAGAAGA]




>consensus_1143#2
GTTGAATTTTTATTTCTGAAATCAACTTATTAAAAATGAAAACTATCGTGCTTATTTTCG
GCTTTTGCGTTTGCGTTGGTGCTCTGACAATCGAAGAATTAAAAACTAGATTGCATACTG
AGCAATCAGTTTGCAAAACAGAAACTGGCATTGATCAGCAAAAAGCAAATGACGTTATTG
AAGGCAATATCGATGTAGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1143#0      --TGANTTGATCNGCNNAACGCAAATGACGTT-ATTGAAGGCAATATCGATGTAGAAGAT 57
consensus_1143#1      CTTGTATCGTNTTCGACAATCCAAANAAGTTCCATNNCAAAATAACCCGATCACGAAGCT 60
consensus_1143#2      ------------------------------------------------------------
                                                                                  

consensus_1143#0      ANAAAAGTTCAATTGTACCTGCCCGGGCGGCCGCTCNACTNCTGCACCTCANGGACGTNA 117
consensus_1143#1      GTTCAT-TGCTTTCGCTCTTGTCATTGCCACTGTCTA--TGCTGCNCCTCAAGGACGTCA 117
consensus_1143#2      ------------------------------------------------------------
                                                                                  

consensus_1143#0      AGAAGAGGTAGTNCTCNTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATAG 177
consensus_1143#1      AGAAGAGGTAGTACTCGTCAAAGAAACACCCTCAGATAATATTGGCTTGGGTGGCTATAN 177
consensus_1143#2      -GTTGAATTTTTATTTCTGAAATCAACTTATTAAAA--ATGAAAACTATCGTGCTTAT-- 55
                       *  **  *  *  *  * ***  ***    * * *  **     **   ***  ***  

consensus_1143#0      ATATGCCTACGAACTTTCCAATGGTCAGTCTCATCATGAAG-TAGCGGAATTAGTTAATG 236
consensus_1143#1      ATATGCCTACGAACTTTCCAATGGTCAGTCTCATCAGGAAGGTAGCGGAATTAGTTAATG 237
consensus_1143#2      TTTCGGCTTTTGCGTTTGCGTTGGT-GCTCTGACAAT--------CGAAG--AATTAAAA 104
                       *  * **      *** *  ****   *** *  *         ** *   * ****  

consensus_1143#0      AAGGAACCGAAAATGAGGCTTTAACTGTTCGAGGCACTTATAGTTGGGTAGAACCACAAA 296
consensus_1143#1      AAGGAACCGAAAATGAGGCTTTNNCTGTTCGAGGCAGTTATAGTTGGGTAGAACCACAAA 297
consensus_1143#2      ACTAGATTGCATACTGAGCAATCAGTTTGCAAAACAGAAACTGGCATTGATCAGCAAAAA 164
                      *    *  * * *    **  *   * * * *  **   *  *      *  * ** ***

consensus_1143#0      NCANTACNNTATACACTGTAAATTATGTAGCTGATGAAAATGGTTTCCATCCTGTGGNTG 356
consensus_1143#1      GCAATACAGTATACNCTGTAAATTATGTAGCTNATGAGAATGGTTCCATCCCTGTGGGTG 357
consensus_1143#2      GCAA-ATGACGT-TATTGAAGGCAATATCGATGTAGAAGA-------------------- 202
                       **  *     *    ** *    ** * * *   **  *                    

consensus_1143#0      AACATCTTCCTGC 369
consensus_1143#1      AACNT-------- 362
consensus_1143#2      -------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)