These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GCCACGTGTATGTATCGTTCTTAGATTTTAAAATAAAGATAAAAATCGTATTTCATCAAATATTTAGTTATTATTTTTTTATGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAAGTTGGTGATGATATTGCTAAAGCTACTAGTGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAGACAAGCTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAGAACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATATTGTTTCTAT] [+] EMBL BI514522 [GCCACGTGTATGTATCGTTCTTAGATTTTAAAATAAAGATAAAAATCGTATTTCATCAAATATTTAGTTATTATTTTTTTATGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAAGTTGGTGATGATATTGCTAAAGCTACTAGTGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAGACAAGCTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAGAACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATATTGTTTCTAT] consensusID : consensus_1146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 400 fasta sequence [AGGCGTGGTCNCGGCCGAGGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAGTTGGTNATNATANTGCTAAAGCTAATAGGTGATTGGAAGGGTTTGAAAANTACTGTACAATTANCAATTCANAACAGACAANGCTACAATTTCAGTAGTTCCATCTGNTGCATCATTAANTATTAAATCATTGAAAGAACCTNCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATAATGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGTN] [-] EMBL BG101546 [AGGCGTGGTCNCGGCCGAGGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAGTTGGTGATGATATTGCTAAAGCTACTA GTGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAGACAANGCTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAGAACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATATTGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGT ] [-] EMBL BG101594 [ GTNATNATANTGTTAAAGCTAATAGGTGATTGGAAGGGTTTGAAAANTACTGTACAATTANCAATTCANAACAGACAA GCTACAATTTCAGTAGTTCCATCTGNTGCATCATTAANTATTAAATCATTGAAAGAACCTNCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATAATGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1146#0 GCCACGTGTATGTATCGTTCTTAGATTTTAAAATAAAGATAAAAATCGTATTTCATCAAA 60 consensus_1146#1 ------------------------------------------------------------ consensus_1146#0 TATTTAGTTATTATTTT--TTTATGTACTTATAATCAAAATGCCTCCTAAATTTGATCCT 118 consensus_1146#1 -----AGGCGTGGTCNCGGCCGAGGTACTTATAATCAAAATGCCTCCTAAATTTGATCCT 55 ** * * * ************************************ consensus_1146#0 AATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCT 178 consensus_1146#1 AATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCT 115 ************************************************************ consensus_1146#0 TTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAAGTTGGTGATGATATTGCT 238 consensus_1146#1 TTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAA-GTTGGTNATNATANTGCT 174 ***************************************** ****** ** *** **** consensus_1146#0 AAAGCTACTAG-TGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAG 297 consensus_1146#1 AAAGCTAATAGGTGATTGGAAGGGTTTGAAAANTACTGTACAATTANCAATTCANAACAG 234 ******* *** ******************** ************* ******* ***** consensus_1146#0 ACAAG-CTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAG 356 consensus_1146#1 ACAANGCTACAATTTCAGTAGTTCCATCTGNTGCATCATTAANTATTAAATCATTGAAAG 294 **** ************************ *********** ***************** consensus_1146#0 AACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTG 416 consensus_1146#1 AACCTNCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTG 354 ***** ****************************************************** consensus_1146#0 ATGATATTGTTTCTAT------------------------------ 432 consensus_1146#1 ATGATAATGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGTN 400 ****** ********* |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |