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Apis mellifera
cluster # 1172 cluster # 1172       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1172#0 length = 462 sequences # 1  
 consensus_1172#1 length = 434 sequences # 2  
consensusID : consensus_1172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence 
                              [ATGCGTTGACAGTAATAAAAGTACTATTATAGAAATTATTACACTTGCACCGAATCGAGGAGCGATTATATATTCATCGTTGCGAACGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAGTAAGGATCACGACGTTTCACTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGAGGAGGGGAGAGGGGAGGGGAGGGGGGAGACAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTTGCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTTGG]

[+] EMBL BE844531             [ATGCGTTGACAGTAATAAAAGTACTATTATAGAAATTATTACACTTGCACCGAATCGAGGAGCGATTATATATTCATCGTTGCGAACGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAGTAAGGATCACGACGTTTCACTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGAGGAGGGGAGAGGGGAGGGGAGGGGGGAGACAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTTGCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTTGG]




>consensus_1172#0
ATGCGTTGACAGTAATAAAAGTACTATTATAGAAATTATTACACTTGCACCGAATCGAGG
AGCGATTATATATTCATCGTTGCGAACGAGCCGTTTCTAAAATAATAGAAGAACAACAAC
TGTTGAAGTATATAAGTAAGGATCACGACGTTTCACTCGCGAAAGTATGGACGAACAAGT
ATGGAGGGAAAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGAGGAGGGGAGA
GGGGAGGGGAGGGGGGAGACAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTC
CCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGC
TGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTTGC
TATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTTGG

consensusID : consensus_1172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 434
fasta sequence 
                              [CGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAATAAGGATCACGACGTTTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGGGAGAGGGGGGGGACAAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATNNNNCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGATAATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGAGTAGAC]

[+] EMBL BI506489             [CGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAATAAGGATCACGACGTTTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGGGAGAGGGGGGGGACAAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATNNNNCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGATAATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGAGTAGAC]
[+] EMBL BI506393             [CGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAATAAGGATCACGACGTTTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGGGAGAGGGGGGGGACAAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTGCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGATAATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGAGTAGA ]




>consensus_1172#1
CGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAATAAGGATCAC
GACGTTTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGTAGGAAAGGTGGGGAGAA
AAGCTTGGTATCGGGAGAGGGGGGGGACAAAAAAAAAATATCATGCTTAAAGTTTCTCGG
TTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGG
ATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCA
TATNNNNCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCC
TGTGTGATAATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGA
GTATGAGAGTAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1172#0      ATGCGTTGACAGTAATAAAAGTACTATTATAGAAATTATTACACTTGCACCGAATCGAGG 60
consensus_1172#1      ------------------------------------------------------------
                                                                                  

consensus_1172#0      AGCGATTATATATTCATCGTTGCGAACGAGCCGTTTCTAAAATAATAGAAGAACAACAAC 120
consensus_1172#1      --------------------------CGAGCCGTTTCTAAAATAATAGAAGAACAACAAC 34
                                                **********************************

consensus_1172#0      TGTTGAAGTATATAAGTAAGGATCACGACGTTTCACTCGCGAAAGTATGGACGAACAAGT 180
consensus_1172#1      TGTTGAAGTATATAAATAAGGATCACGACGTTT----CGCGAAAGTATGGACGAACAAGT 90
                      *************** *****************    ***********************

consensus_1172#0      ATGGAGGGAAAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGAGGAGGGGAGA 240
consensus_1172#1      ATGGAGG------GAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCG------GGAGA 138
                      *******      ************************************      *****

consensus_1172#0      GGGGAGGGGAGGGGGGAGACAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTC 300
consensus_1172#1      GGGGGGGGACA---------AAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTC 189
                      **** ***            ****************************************

consensus_1172#0      CCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGC 360
consensus_1172#1      CCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGC 249
                      ************************************************************

consensus_1172#0      TGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTTGC 420
consensus_1172#1      TGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATNNNN-C 308
                      ******************************************************     *

consensus_1172#0      TATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTTGG------------------ 462
consensus_1172#1      TATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGAT 368
                      *************************************** **                  

consensus_1172#0      ------------------------------------------------------------
consensus_1172#1      AATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGA 428
                                                                                  

consensus_1172#0      ------
consensus_1172#1      GTAGAC 434


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)