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Apis mellifera
cluster # 1173 cluster # 1173       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1173#0 length = 557 sequences # 2  
 consensus_1173#1 length = 473 sequences # 1  
consensusID : consensus_1173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 557
fasta sequence 
                              [CCTGTTCTACGTGTACACGATCAAGATACCTCAACACAGCAACGGGCGACGAAAAGCGACTCGTATGCACCTGGGACCGCGGTTCGAGGCGCACTTCAAGATGCGGTAGAGGAAGTCCCTCGACCCGAGCTCACCCGAATCCAGACCGGTGCAACAACCGACAGTTATCCCGCGATATTCCCGGTGACACGTACGAAGCATAATAATCGCATGCATAATAACAACAATCAACGGAGCGAGACTCCTGGAACGTAGAAAAGAAGGAAGAGAATCCGGCAAAGGATTCCTGAAATACCCATCCATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCCCAAGTTTCTCAGGCCGAACGAGCCCGGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAGGAGCGCGCCTAGGCGCGCGCGATCGTCCTCCCCTTCGAGAAAAAAACGTCATCGTCGACCTTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTTCGAGAGAAGAGAAGTGA]

[+] EMBL BI510121             [CCTGTTCTACGTGTACACGATCAAGATACCTCAACACAGCAACGGGCGACGAAAAGCGACTCGTATGCACCTGGGACCGCGGTTCGAGGCGCACTTCAAGATGCGGTAGAGGAAGTCCCTCGACCCGAGCTCACCCGAATCCAGACCGGTGCAACAACCGACAGTTATCCCGCGATATTCCCGGTGACACGTACGAAGCATAATAATCGCATGCATAATAACAACAATCAACGGAGCGAGACTCCTGGAACGTAGAAAAGAAGGAAGAGAATCCGGCAAAGGATTCCTGAAATACCCATCCATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCCCAAGTTTCTCAGGCCGAACGAGCCCGGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAGGAGCGCGCCTAGGCGCGCGCGATCGTCCTCCCCTTCGAGAAAAAAACGTCATCGTCGACCTTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTTCGAGAGAAGAGAAGTGA]
[+] EMBL BI505999             [                                      GCAACGGGCGACGAAAAGCGACTCGTATGCACCTGGGACCGCGGTTCGAGGCGCACTTCAAGATGCGGTAGAGGAAGTCCCTCGACCCGAGCTCACCCGAATCCAGACCGGTGCAACAACCGACAGTTATCCCGCGATATTCCCGGTGACACGTACGAAGCATAATAATCGCATGCATAATAACAACAATCAACGGAGCGAGACTCCTGGAACGTAGAAAAGAAGGAAGAGAATCCGGCAAAGGATTCCTGAAATACCCATCCATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCCCAAGTTTCTCAGGCCGAACGAGCCCGGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAGGAGCGCGCCTAGGCGCGCGCGATCGTCCTCCCCTTCGAGAAAAAAACGTCATCGTCGACCTTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTTCGAGAGAAGAGAAGTGA]




>consensus_1173#0
CCTGTTCTACGTGTACACGATCAAGATACCTCAACACAGCAACGGGCGACGAAAAGCGAC
TCGTATGCACCTGGGACCGCGGTTCGAGGCGCACTTCAAGATGCGGTAGAGGAAGTCCCT
CGACCCGAGCTCACCCGAATCCAGACCGGTGCAACAACCGACAGTTATCCCGCGATATTC
CCGGTGACACGTACGAAGCATAATAATCGCATGCATAATAACAACAATCAACGGAGCGAG
ACTCCTGGAACGTAGAAAAGAAGGAAGAGAATCCGGCAAAGGATTCCTGAAATACCCATC
CATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCCCAAGTTTCTCAGGCCGAACGAGCCC
GGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAG
GAGCGCGCCTAGGCGCGCGCGATCGTCCTCCCCTTCGAGAAAAAAACGTCATCGTCGACC
TTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTT
CGAGAGAAGAGAAGTGA

consensusID : consensus_1173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence 
                              [GCATGCATAATAACAACAATCAACGGAGCGAGACTCCTGGAACGTAGAAAAGAAGGAAAAGAATCCGGCAAAGGATTCCTGAAATACCCATCCATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCTCAGTTTCTCAGGCCGAACGAGCCCGGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAGGAGCGCGCGCGATCGTCCTCCCCTTCGAGAAAAAACGTCATCGTCGACCTTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTTCGAGAGAAGAGAAGTGAAGAAGAAGAAGAAACAGAAGAAACAGAAGAGGAGGAGGAAGAAGGAGAGACCCGGTCGTCGTCACGGTGGCAAGCTTAGTGAGCGGGAACGTAGCGGTGCGTTACGATGAGGCGTCAGGAGTGGTTGGCACGGGGG]

[+] EMBL BI504538             [GCATGCATAATAACAACAATCAACGGAGCGAGACTCCTGGAACGTAGAAAAGAAGGAAAAGAATCCGGCAAAGGATTCCTGAAATACCCATCCATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCTCAGTTTCTCAGGCCGAACGAGCCCGGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAGGAGCGCGCGCGATCGTCCTCCCCTTCGAGAAAAAACGTCATCGTCGACCTTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTTCGAGAGAAGAGAAGTGAAGAAGAAGAAGAAACAGAAGAAACAGAAGAGGAGGAGGAAGAAGGAGAGACCCGGTCGTCGTCACGGTGGCAAGCTTAGTGAGCGGGAACGTAGCGGTGCGTTACGATGAGGCGTCAGGAGTGGTTGGCACGGGGG]




>consensus_1173#1
GCATGCATAATAACAACAATCAACGGAGCGAGACTCCTGGAACGTAGAAAAGAAGGAAAA
GAATCCGGCAAAGGATTCCTGAAATACCCATCCATCCACTCAGTGCGGCCAACCCAAGGC
TCTCTCTCAGTTTCTCAGGCCGAACGAGCCCGGGAGCCTCGGATCGATCGATCGATGAGA
ACCACTGCCCTCTGAAAGGATCCCTTTAGAGGAGCGCGCGCGATCGTCCTCCCCTTCGAG
AAAAAACGTCATCGTCGACCTTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCC
CCCGTCGAGGGGCACCTTTTCGAGAGAAGAGAAGTGAAGAAGAAGAAGAAACAGAAGAAA
CAGAAGAGGAGGAGGAAGAAGGAGAGACCCGGTCGTCGTCACGGTGGCAAGCTTAGTGAG
CGGGAACGTAGCGGTGCGTTACGATGAGGCGTCAGGAGTGGTTGGCACGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1173#0      CCTGTTCTACGTGTACACGATCAAGATACCTCAACACAGCAACGGGCGACGAAAAGCGAC 60
consensus_1173#1      ------------------------------------------------------------
                                                                                  

consensus_1173#0      TCGTATGCACCTGGGACCGCGGTTCGAGGCGCACTTCAAGATGCGGTAGAGGAAGTCCCT 120
consensus_1173#1      ------------------------------------------------------------
                                                                                  

consensus_1173#0      CGACCCGAGCTCACCCGAATCCAGACCGGTGCAACAACCGACAGTTATCCCGCGATATTC 180
consensus_1173#1      ------------------------------------------------------------
                                                                                  

consensus_1173#0      CCGGTGACACGTACGAAGCATAATAATCGCATGCATAATAACAACAATCAACGGAGCGAG 240
consensus_1173#1      ----------------------------GCATGCATAATAACAACAATCAACGGAGCGAG 32
                                                  ********************************

consensus_1173#0      ACTCCTGGAACGTAGAAAAGAAGGAAGAGAATCCGGCAAAGGATTCCTGAAATACCCATC 300
consensus_1173#1      ACTCCTGGAACGTAGAAAAGAAGGAAAAGAATCCGGCAAAGGATTCCTGAAATACCCATC 92
                      ************************** *********************************

consensus_1173#0      CATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCCCAAGTTTCTCAGGCCGAACGAGCCC 360
consensus_1173#1      CATCCACTCAGTGCGGCCAACCCAAGGCTCTCTCTCA-GTTTCTCAGGCCGAACGAGCCC 151
                      ********************************** ** **********************

consensus_1173#0      GGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAG 420
consensus_1173#1      GGGAGCCTCGGATCGATCGATCGATGAGAACCACTGCCCTCTGAAAGGATCCCTTTAGAG 211
                      ************************************************************

consensus_1173#0      GAGCGCGCCTAGGCGCGCGCGATCGTCCTCCCCTTCGAGAAAAAAACGTCATCGTCGACC 480
consensus_1173#1      GAGC----------GCGCGCGATCGTCCTCCCCTTCGAGAAAAAA-CGTCATCGTCGACC 260
                      ****          ******************************* **************

consensus_1173#0      TTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTT 540
consensus_1173#1      TTTCCCCCTGCCCCTCCCCGCCGTTAAACCGTTTCCCTCCCCCGTCGAGGGGCACCTTTT 320
                      ************************************************************

consensus_1173#0      CGAGAGAAGAGAAGTGA------------------------------------------- 557
consensus_1173#1      CGAGAGAAGAGAAGTGAAGAAGAAGAAGAAACAGAAGAAACAGAAGAGGAGGAGGAAGAA 380
                      *****************                                           

consensus_1173#0      ------------------------------------------------------------
consensus_1173#1      GGAGAGACCCGGTCGTCGTCACGGTGGCAAGCTTAGTGAGCGGGAACGTAGCGGTGCGTT 440
                                                                                  

consensus_1173#0      ---------------------------------
consensus_1173#1      ACGATGAGGCGTCAGGAGTGGTTGGCACGGGGG 473


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)