These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [TTTATGTCATCCACGTTTCAAGGATGAATTTATTCTTAAAAACTAATTTAGAATTATTCNNNATTATTCAGAATTTCTGGAAACGTGGTGGTGTGGAGCTCAAAACGGTGGGTGCTCGTGTTTCTCTTGCCAATGTATAATACTTTTTATCCTTAACGGTCCCTTCCATCCGCGCGGACATCCGGTTCTTATCGACCATTGCCACCACCGGTAGTAACGCGAGACGATATTTTCTTAACGCTGTATAGGAAACGTATATATATACGCGCCGGGAAAAATTATCCTCCCGACACTTGGACGCAAGCACGCTCGTCCAATGTCGGTTTTCTTCGATCGTTCATTTTTTTTCCGAGGAAGCAATCGATTTTATATCGATTACACGAACGAATATACGGTTCCTTACGATTCGTAGAAAATATCGTCGTCGACGTGGTGATTTGTATATTTGGACATTTATATTCGGGAGAGAAGTCGGTGATTAGAAGTGCAGTTCGCCAAACAATCGAAGTTGTTATTATTATTATTATTATTACTA] [+] EMBL BI513144 [TTTATGTCATCCACGTTTCAAGGATGAATTTATTCTTAAAAACTAATTTAGAATTATTCNNNATTATTCAGAATTTCTGGAAACGTGGTGGTGTGGAGCTCAAAACGGTGGGTGCTCGTGTTTCTCTTGCCAATGTATAATACTTTTTATCCTTAACGGTCCCTTCCATCCGCGCGGACATCCGGTTCTTATCGACCATTGCCACCACCGGTAGTAACGCGAGACGATATTTTCTTAACGCTGTATAGGAAACGTATATATATACGCGCCGGGAAAAATTATCCTCCCGACACTTGGACGCAAGCACGCTCGTCCAATGTCGGTTTTCTTCGATCGTTCATTTTTTTTCCGAGGAAGCAATCGATTTTATATCGATTACACGAACGAATATACGGTTCCTTACGATTCGTAGAAAATATCGTCGTCGACGTGGTGATTTGTATATTTGGACATTTATATTCGGGAGAGAAGTCGGTGATTAGAAGTGCAGTTCGCCAAACAATCGAAGTTGTTATTATTATTATTATTATTACTA] consensusID : consensus_1174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCGAATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAGAGAGAGAGAGATGTTTCCCTTTCCAACGGAAAAGTTGGAGAGAAAAGCGTGCACGAAGGATTCGTGGAAAGTTTTGCCCTCGGGGAAGAAACGTGGAAGGGACGTGGAAGGCCACGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAATAACAAAAACGAGTAATAATAATAATAGTAATAATAATAATAATAATAACAACTTCGATTGTTTGGCGAACTGCACTTCTAATCACCGACTTCTCTCCCGAANNNNNAAAAAAAAAAAA] [+] EMBL BI504518 [TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCGAATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAGAGAGAGAGAGATGTTTCCCTTTCCAACGGAAAAGTTGGAGAGAAAAGCGTGCACGAAGGATTCGTGGAAAGTTTTGCCCTCGGGGAAGAAACGTGGAAGGGACGTGGAAGGCCACGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAATAACAAAAACGAGTAATAATAATAATAGTAATAATAATAATAATAATAACAACTTCGATTGTTTGGCGAACTGCACTTCTAATCACCGACTTCTCTCCCGAANNNNNAAAAAAAAAAAA] [+] EMBL BI509191 [TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCGAATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAGAGAGAGAGAGATGTTTCCCTTTCCAACGGAAAAGTTGGAGAGAAAAGCGTGCACGAAGGATTCGTGGAAAGTTTTGCCCTCGGGGAAGAAACGTGGAAGGGACGTGGAAGGCCACGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAATAACAAAAACGAGTAATAATAATAATAGTAATAATAATAATAATAATAACAACTTCGATTGTTTGGCGAACTGCACTTCTAATCACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1174#0 TTTATGTCATCCACGTTTCAAGGATGAATTTATTCTTAAAAACTAATTTAGAATTATTCN 60 consensus_1174#1 -------TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCG 53 * * * * * *** *** * ** * *** ** ** consensus_1174#0 NNATTATTCAGAATTTCTGGAAACGTGGTGGTGTGGAGCTCAAAACGGTGGGTGCTCGTG 120 consensus_1174#1 AATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAG 113 * *** * ** * * ** * * * *** * * * consensus_1174#0 TTTCTCTTGCCAATGTATAATACTTTTTATCCTTAACGGTCCCTTCCATCCGCGCGGACA 180 consensus_1174#1 AGAG----AGAGAGATGTTTCCCTTTCCAACGG-AAAAGTTGGAGAGAAAAGCGTGCACG 168 * * * **** * * ** ** * *** * ** consensus_1174#0 TCCGGTTCTTATCGACCATTGCCACCACCGGTAGTAACGCGAGACGATATTTTCTTAACG 240 consensus_1174#1 AAGGATTCGTGGAAAGTTTTGCCCTCGG-GGAAGAAACGTGGAAGGGACGTGGAAGGCCA 227 * *** * * ***** * ** ** **** * * * * * consensus_1174#0 CTGTATAGGAAACGTATATATATACGCGCCGGGAAAAATTATCCTCCCGACACTTGGACG 300 consensus_1174#1 CGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAA 287 * ** * *** * *** * * * * * * ** * * consensus_1174#0 CAAGCACGCTCGTCCAATGTCGGTTTTCTTCGATCGTTCATTTTTTTTCCGAGGAAGCAA 360 consensus_1174#1 TAA-CAAAAACGAGTAATAATAATAAT-----AGTAATAATAATAATAATAATAACAACT 341 ** ** ** *** * * * * ** * * * * consensus_1174#0 TCGATTTTATATCGA-TTACACGAACGAATATACGGTTC-CTTACGATTCGTAGAAAATA 418 consensus_1174#1 TCGATTGTTTGGCGAACTGCACTTCTAATCACCGACTTCTCTCCCGAANNNNNAAAAAAA 401 ****** * * *** * *** * * *** ** *** **** * consensus_1174#0 TCGTCGTCGACGTGGTGATTTGTATATTTGGACATTTATATTCGGGAGAGAAGTCGGTGA 478 consensus_1174#1 AAAAA------------------------------------------------------- 406 consensus_1174#0 TTAGAAGTGCAGTTCGCCAAACAATCGAAGTTGTTATTATTATTATTATTATTACTA 535 consensus_1174#1 --------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |