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Apis mellifera
cluster # 1187 cluster # 1187       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1187#0 length = 587 sequences # 2  
consensus_1187#1 length = 330 sequences # 1  

consensusID : consensus_1187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence
                              [CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTGGAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATAACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTTACAGAGGTGTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAATACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCACATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT]

[+] EMBL BI512999             [CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTGGAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATAACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTT                                                                                                                                                                                           ]
[+] EMBL BI514289             [                                                                                                                             GAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGACTGAAGGAGTGAGAGGACTTTACAGAGGTGTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAATACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCACATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT]


>consensus_1187#0 CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTG GAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATA ACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCG GGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGT ATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGA TTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCG GTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTTACAGAGGTGTAACGCCGAAC GTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAATACCATTAAAACA TGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCACATGTTCGCAGCA GCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT



consensusID : consensus_1187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence
                              [GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACACGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGTATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGTTTTGTACCTGGAATGTTTGGCGTCTCACATGGTGCTATTCAATTTATGGTGTACGAAGAATTGAAGAATTGGTACAACAATTATTTGAATGTTCCGATTGATACGAAGCTGAGCACATGGGAATATATTTTCTTTGCAGCAGTTTCAAAA]

[+] EMBL BI516896             [GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACACGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGTATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGTTTTGTACCTGGAATGTTTGGCGTCTCACATGGTGCTATTCAATTTATGGTGTACGAAGAATTGAAGAATTGGTACAACAATTATTTGAATGTTCCGATTGATACGAAGCTGAGCACATGGGAATATATTTTCTTTGCAGCAGTTTCAAAA]


>consensus_1187#1 GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACA CGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGT ATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGT TTTGTACCTGGAATGTTTGGCGTCTCACATGGTGCTATTCAATTTATGGTGTACGAAGAA TTGAAGAATTGGTACAACAATTATTTGAATGTTCCGATTGATACGAAGCTGAGCACATGG GAATATATTTTCTTTGCAGCAGTTTCAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1187#0      CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTG 60
consensus_1187#1      ------------------------------------------------------------
                                                                                  

consensus_1187#0      GAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATA 120
consensus_1187#1      ------------------------------------------------------------
                                                                                  

consensus_1187#0      ACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCG 180
consensus_1187#1      ------------------------------------------------------------
                                                                                  

consensus_1187#0      GGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGT 240
consensus_1187#1      ------------------------------------------------------------
                                                                                  

consensus_1187#0      ATATCTGGTGGCGTGGTTTCCACCTTG---ATGCTGCATCCGTTGGACTTGATCAAGAC- 296
consensus_1187#1      GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACA 60
                        * * *  *  *   **   ** **    ***    **** **     *  * ***** 

consensus_1187#0      ----TAGATTCGCAGT-TAGCGATGGCCACTCACGTGTGGGTCCAC---AATACAAGAGT 348
consensus_1187#1      CGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGT 120
                          *   *   ** * **  ****   *    * *  **   ***    *** **  **

consensus_1187#0      CTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTTACAGAGGT 408
consensus_1187#1      ATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGT 180
                       * * *   **  *** * *****  **   * ******** *****  * **  *****

consensus_1187#0      GTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAAT 468
consensus_1187#1      TTTGTACCTGGAAT------GTTTGGCGTCTCACATGGT-GCTATTCAATTT------AT 227
                       *    **     *       * *****   **   *** ******   ***      **

consensus_1187#0      ACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCAC 528
consensus_1187#1      GGTGT----ACGAAGAATTGAAGAATTGGTA-CAACAATTATTTGAATGTTCCGATTGAT 282
                          *    **   **    * *      ** **  **   ****       ****  * 

consensus_1187#0      ATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT 587
consensus_1187#1      A----CGAAGCTGAGCACATGGGAAT--ATATTTTCTTTGCAGCAGTTTCAAAA----- 330
                      *    ** *** * * **   *****   ** ***  **    **  * **  *     




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)