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Apis mellifera
cluster # 1188 cluster # 1188       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1188#0 length = 501 sequences # 2  
 consensus_1188#1 length = 449 sequences # 1  
consensusID : consensus_1188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 501
fasta sequence 
                              [AATCGACAATGGCGATGAAGAGCAAGAAGCAGTATACCGGGCCCAGCCTCGGATCGAAAAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTATTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGAGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCAACGATACGCCAGCTTTGGCTCCCGCCTCGTTACAGC]

[+] EMBL BI514033             [AATCGACAATGGCGATGAAGAGCAAGAAGCAGTATACCGGGCCCAGCCTCGGATCGAAAAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTATTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGAGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCAACGATACGCCAGCTTTGGCTCCCGCCTCGTTACAGC]
[+] EMBL BI514066             [AATCGACAATGGCGATGAAGAGCAAGAAGCAGTATACCGGGCCCAGCCTCGGATCGAAAAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTATTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGA                                                                                                                                             ]




>consensus_1188#0
AATCGACAATGGCGATGAAGAGCAAGAAGCAGTATACCGGGCCCAGCCTCGGATCGAAAA
GTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTATT
CCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACG
TTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCA
CCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACG
CCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGA
AATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGAGGATGCAACAACTTCAGACGAATC
TTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCAACGATACGCCAGCTT
TGGCTCCCGCCTCGTTACAGC

consensusID : consensus_1188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence 
                              [CTACACGAGGAAAGCAGCCCTGGACGCTCAGAATGCTTTGCACAACGTGAAAACCTTCAATGGGATGCGGCATCCGATCCAGATGAAGCCCGCGGACAGCGAGAACAGAAACGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGNGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCA]

[+] EMBL BI510673             [CTACACGAGGAAAGCAGCCCTGGACGCTCAGAATGCTTTGCACAACGTGAAAACCTTCAATGGGATGCGGCATCCGATCCAGATGAAGCCCGCGGACAGCGAGAACAGAAACGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGNGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCA]




>consensus_1188#1
CTACACGAGGAAAGCAGCCCTGGACGCTCAGAATGCTTTGCACAACGTGAAAACCTTCAA
TGGGATGCGGCATCCGATCCAGATGAAGCCCGCGGACAGCGAGAACAGAAACGAACGTAA
ATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAG
CGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGC
CTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCA
TCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCA
GAAGGAAAAGGACCAGAAGNGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGG
AGTCAATATGGCGCCGCATTACCTGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1188#0      AATCGACAATGGCGATGAAGAGCAAGAAGC--AGTATACCGGGCCCAGCCTCGGATCGAA 58
consensus_1188#1      ---CTACACGAGGAAAGCAGCCCTGGACGCTCAGAATGCTTTGCACAACGTGAAAACCTT 57
                         * ***   *  * * **  *  ** **  ** ** *   ** ** * *   * *   

consensus_1188#0      AAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTA 118
consensus_1188#1      CAATGGG-ATGCGGCATCCGATCCAG---ATGAAGC-CCGCGGACAGCGAGAACA----- 107
                       * *    ** * ***  *  ** **   **   ** ** * * **   *  ***     

consensus_1188#0      TTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGA 178
consensus_1188#1      ----GAAAC-GAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGA 162
                          *   * **************************************************

consensus_1188#0      CGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAG 238
consensus_1188#1      CGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAG 222
                      ************************************************************

consensus_1188#0      CACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAA 298
consensus_1188#1      CACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAA 282
                      ************************************************************

consensus_1188#0      CGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGT 358
consensus_1188#1      CGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGT 342
                      ************************************************************

consensus_1188#0      GAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGAGGATGCAACAACTTCAGACGAA 418
consensus_1188#1      GAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGNGGATGCAACAACTTCAGACGAA 402
                      ************************************* **********************

consensus_1188#0      TCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCAACGATACGCCAGC 478
consensus_1188#1      TCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCA------------- 449
                      ***********************************************             

consensus_1188#0      TTTGGCTCCCGCCTCGTTACAGC 501
consensus_1188#1      -----------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)