|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1112 fasta sequence
[GTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTGTAAGTATAGAAACAAAAAAATCATCGTTTTCAATTTAATCATAATAATTAATAAAACAATTAAATTATCATATAATATATAATTTTTATGAATAAAATGATTCTATACGTTAAAATTATCGAATTGACCAAATTGTACGTCGTACTTTTAGGTTAAATGATTCTATACAGTACAATATAATTGGCTATATTCAATCTTATAAAACATGATTTTTTTGCTTTTTGTATTGTAATTAGATTGTTTATATATAACATAAATAAATTAATTAATTTCACTTCTAGAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATTTGTGTGATAAAGAAGATGGTGCTATGCAAAGGTGCTTAACAAATGCAAATTTTGCTCAAGTACATGATGTAGAAAAACATTCTGGATTTTGTCCAAATGGACAGCAACCAAAATTTTATAAAATACAATGTTCAATTTGCAAAAAATGGTTTTTAAACAATGATTCTATGGTTACTCACCTGAGAATGCACTGTAGTGGAAATCAGTGTGAAGTTTGTCAACAAAATTTTCAGGATAATTCCAGTTTACATGCTCATATGCTGACTCATGTTGGGATGAGTCNATTGGAATGCAACATCTG]
[+] EMBL BE844387 [GTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTGTAAGTATAGAAACAAAAAAATCATCGTTTTCAATTTAATCATAATAATTAATAAAACAATTAAATTATCATATAATATATAATTTTTATGAATAAAATGATTCTATACGTTAAAATTATCGAATTGACCAAATTGTACGTCGTACTTTTAGGTTAAATGATTCTATACAGTACAATATAATTGGCTATATTCAATCTTATAAAACATGATTTTTTTGCTTTTTGTATTGTAATTAGATTGTTTATATATAACATAAATAAATTAATTAATTTCACTTCTAGAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGA ]
[+] EMBL BI506603 [ ATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATTTGTGTGATAAAGAAGATGGTGCTATGCAAAGGTGCTTAACAAATGCAAATTTTGCTCAAGTACATGATGTAGAAAAACATTCTGGATTTTGTCCAAATGGACAGCAACCAAAATTTTATAAAATACAATGTTCAATTTGCAAAAAATGGTTTTTAAACAATGATTCTATGGTTACTCACCTGAGAATGCACTGTAGTGGAAATCAGTGTGAAGTTTGTCAACAAAATTTTCAGGATAATTCCAGTTTACATGCTCATATGCTGACTCATGTTGGGATGAGTCNATTGGAATGCAACATCTG]
consensusID : consensus_1193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[GATATAAAAGTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATT]
[+] EMBL BI504541 [GATATAAAAGTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1193#0 GTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTA 60
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 AAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGAT 120
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 TTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTGTAAGTATAGAAACAAAAAAA 180
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 TCATCGTTTTCAATTTAATCATAATAATTAATAAAACAATTAAATTATCATATAATATAT 240
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 AATTTTTATGAATAAAATGATTCTATACGTTAAAATTATCGAATTGACCAAATTGTA-CG 299
consensus_1193#1 ---------------------GATATAAAAGTAAATTAATCGATTCAATAAATTTTATCA 39
**** ****** *** * ***** ** *
consensus_1193#0 TCGTACTTTTAGGTTAAATGATT--CTATACAGTACAATATAATTGGCTATATTCAATCT 357
consensus_1193#1 AAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAA 99
** * **** ** ** * ** ** * ** * ** * * * * ***
consensus_1193#0 TATAAAACATGATTTTTTTGCTTTTTGTATTGTAATTAGATTGTTTATATATAACATAAA 417
consensus_1193#1 TAAAAAGAATAAG------AATTGGTAGATTTTGATTTATATGCT-----GTTTCGTAGG 148
** *** ** * ** * *** * *** ** * * * **
consensus_1193#0 TAAATTAATTAATTTCACTTCTAGAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAA 477
consensus_1193#1 TGAAATGTGTAATTTTCGTT----AATAAATCATAGCAAATGGAAGATTTTAAAGTGAAA 204
* ** * ****** ** ************************************
consensus_1193#0 GATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAA 537
consensus_1193#1 GATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAA 264
************************************************************
consensus_1193#0 ACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAG 597
consensus_1193#1 ACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAG 324
************************************************************
consensus_1193#0 GACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGAC 657
consensus_1193#1 GACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGAC 384
************************************************************
consensus_1193#0 TACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAAT 717
consensus_1193#1 TACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAAT 444
************************************************************
consensus_1193#0 GAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCAT 777
consensus_1193#1 GAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCAT 504
************************************************************
consensus_1193#0 CAAAATTGGACAGCACAAATTGCAAATACAAATTTGTGTGATAAAGAAGATGGTGCTATG 837
consensus_1193#1 CAAAATTGGACAGCACAAATTGCAAATACAAATT-------------------------- 538
**********************************
consensus_1193#0 CAAAGGTGCTTAACAAATGCAAATTTTGCTCAAGTACATGATGTAGAAAAACATTCTGGA 897
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 TTTTGTCCAAATGGACAGCAACCAAAATTTTATAAAATACAATGTTCAATTTGCAAAAAA 957
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 TGGTTTTTAAACAATGATTCTATGGTTACTCACCTGAGAATGCACTGTAGTGGAAATCAG 1017
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 TGTGAAGTTTGTCAACAAAATTTTCAGGATAATTCCAGTTTACATGCTCATATGCTGACT 1077
consensus_1193#1 ------------------------------------------------------------
consensus_1193#0 CATGTTGGGATGAGTCNATTGGAATGCAACATCTG 1112
consensus_1193#1 -----------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |