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Apis mellifera
cluster # 1194 cluster # 1194       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1194#0 length = 663 sequences # 2  
consensus_1194#1 length = 342 sequences # 1  

consensusID : consensus_1194#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence
                              [CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGCCGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAAGAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATGTTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTAAAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCC]

[+] EMBL BI505619             [CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGCCGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAA                                                                                                                                                                                            ]
[+] EMBL BI507588             [                                                                                                         TTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAAATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAAGAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATGTTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTAAAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCC]


>consensus_1194#0 CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGC CGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAA GAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAA ATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGAT AGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGAT CGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCA AGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCT TGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAAGA ATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATGTT GCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTAAA GGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTT CCC



consensusID : consensus_1194#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence
                              [TATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCCTTGTATATCAACAGGAATTTATGGATATCCACAAAGACCAGCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAACAAAAATGCTGTGGATAGAATAATTTTTTGCCTATTTTTGAAAACCGACAAAGATATATACGAAGAATTGTTACAAAAATATTTTGCTATTGATTAGATTACTCTCTAACAGAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTATACACATCGAATAATATTCATAGAAAAAAA]

[+] EMBL BI504858             [TATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCCTTGTATATCAACAGGAATTTATGGATATCCACAAAGACCAGCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAACAAAAATGCTGTGGATAGAATAATTTTTTGCCTATTTTTGAAAACCGACAAAGATATATACGAAGAATTGTTACAAAAATATTTTGCTATTGATTAGATTACTCTCTAACAGAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTATACACATCGAATAATATTCATAGAAAAAAA]


>consensus_1194#1 TATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCCTTGT ATATCAACAGGAATTTATGGATATCCACAAAGACCAGCAGCTAAAGTGGCTTTATTGACA GTCAAGAAGTTCCTAACAGAGAACAAAAATGCTGTGGATAGAATAATTTTTTGCCTATTT TTGAAAACCGACAAAGATATATACGAAGAATTGTTACAAAAATATTTTGCTATTGATTAG ATTACTCTCTAACAGAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAA ACTGTATCAGTATACACATCGAATAATATTCATAGAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1194#0      CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGC 60
consensus_1194#1      ------------------------------------------------------------
                                                                                  

consensus_1194#0      CGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAA 120
consensus_1194#1      ---------------TATGAAAACAGTTTAATCGTTGCTAAAGAAAATC--AATTGCGCA 43
                                     ***      ****  ****    *  ****  **   ****   *

consensus_1194#0      GAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAA 180
consensus_1194#1      CAATTGCTTTCCCT----TGTATATCAA-CAGGAATTTA--TGGATATCCACAAAGACCA 96
                       ****   ** * *    *  *  **** ** **** *   * **  *  * *** *  *

consensus_1194#0      ATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGAT 240
consensus_1194#1      GCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAAC-AAAAATGCTGT 155
                           * **   **       * *   *****  *  **  ** ***  * **** *  *

consensus_1194#0      AGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGAT 300
consensus_1194#1      GGATAGAATA-----ATTTTTTGCCTATT---TTTGAAAACCGACAAAGATATATACGAA 207
                       **   ****     **  ***   ** *    *  ***    ***** *** *** ** 

consensus_1194#0      CGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCA 360
consensus_1194#1      GAATTGTTACAAAAATATTTTGCT-------------ATTGATTAGATTACTCTCTAACA 254
                        **    * **** *     * *               * ** * *** *  * *  **

consensus_1194#0      AGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCT 420
consensus_1194#1      --GAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTA 312
                        **  ***  *** * *******  *          **   **  **   *  **    

consensus_1194#0      TG-GCGGCGG-TGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAA 478
consensus_1194#1      TACACATCGAATAATATTCATAGAAAAAAA------------------------------ 342
                      *   *  **  *    ** ** **   * *                              

consensus_1194#0      GAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATG 538
consensus_1194#1      ------------------------------------------------------------
                                                                                  

consensus_1194#0      TTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTA 598
consensus_1194#1      ------------------------------------------------------------
                                                                                  

consensus_1194#0      AAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCT 658
consensus_1194#1      ------------------------------------------------------------
                                                                                  

consensus_1194#0      TTCCC 663
consensus_1194#1      -----
                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)