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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence
[CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGCCGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAAGAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATGTTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTAAAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCC]
[+] EMBL BI505619 [CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGCCGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAA ]
[+] EMBL BI507588 [ TTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAAATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAAGAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATGTTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTAAAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCC]
consensusID : consensus_1194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[TATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCCTTGTATATCAACAGGAATTTATGGATATCCACAAAGACCAGCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAACAAAAATGCTGTGGATAGAATAATTTTTTGCCTATTTTTGAAAACCGACAAAGATATATACGAAGAATTGTTACAAAAATATTTTGCTATTGATTAGATTACTCTCTAACAGAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTATACACATCGAATAATATTCATAGAAAAAAA]
[+] EMBL BI504858 [TATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCCTTGTATATCAACAGGAATTTATGGATATCCACAAAGACCAGCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAACAAAAATGCTGTGGATAGAATAATTTTTTGCCTATTTTTGAAAACCGACAAAGATATATACGAAGAATTGTTACAAAAATATTTTGCTATTGATTAGATTACTCTCTAACAGAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTATACACATCGAATAATATTCATAGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1194#0 CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGC 60
consensus_1194#1 ------------------------------------------------------------
consensus_1194#0 CGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAA 120
consensus_1194#1 ---------------TATGAAAACAGTTTAATCGTTGCTAAAGAAAATC--AATTGCGCA 43
*** **** **** * **** ** **** *
consensus_1194#0 GAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAA 180
consensus_1194#1 CAATTGCTTTCCCT----TGTATATCAA-CAGGAATTTA--TGGATATCCACAAAGACCA 96
**** ** * * * * **** ** **** * * ** * * *** * *
consensus_1194#0 ATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGAT 240
consensus_1194#1 GCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAAC-AAAAATGCTGT 155
* ** ** * * ***** * ** ** *** * **** * *
consensus_1194#0 AGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGAT 300
consensus_1194#1 GGATAGAATA-----ATTTTTTGCCTATT---TTTGAAAACCGACAAAGATATATACGAA 207
** **** ** *** ** * * *** ***** *** *** **
consensus_1194#0 CGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCA 360
consensus_1194#1 GAATTGTTACAAAAATATTTTGCT-------------ATTGATTAGATTACTCTCTAACA 254
** * **** * * * * ** * *** * * * **
consensus_1194#0 AGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCT 420
consensus_1194#1 --GAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTA 312
** *** *** * ******* * ** ** ** * **
consensus_1194#0 TG-GCGGCGG-TGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAA 478
consensus_1194#1 TACACATCGAATAATATTCATAGAAAAAAA------------------------------ 342
* * ** * ** ** ** * *
consensus_1194#0 GAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATG 538
consensus_1194#1 ------------------------------------------------------------
consensus_1194#0 TTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTA 598
consensus_1194#1 ------------------------------------------------------------
consensus_1194#0 AAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCT 658
consensus_1194#1 ------------------------------------------------------------
consensus_1194#0 TTCCC 663
consensus_1194#1 -----
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |