These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CTAATTCTATGTCGATGATATGTCGGCTTCAAACAATATTAAAATAATGCAAGCATACAGATTGGCCTATCTGGCCGTCTGACAAATATGAATTTATGGAATAATTTTATAACTTTAATAATCGATCATGGTCAAGGAAAAACCAAATTCAATCCGTATTTACGATTCAGAAGGTTATAGACGTAGAGCTGCATGTATCTGCGTTAAAAACGATCTTGAAGATGAGGTACTTTTGGTTACATCCAGTCGTAGACCTGATAGTTGGATAGTACCTGGTGGAGGTGTTGAACCGGAGGAAGAACCTGCAGTAACAGCATTGCGAGAAGTTCGAGAAGAGGCTGGTGTTTTAGGACAATTAGGCAGATGTCTTGGTATATTTGAGAATGTGGAACACAAACATAGAACACAAGTATGGGTTATGAGAGTAACCGAAGAATTGCCAGAATGGGAAGATTCACGCACTATTGGTCGAAAACGAAAATGGTTCTCTATTCCAGAAGCCTTGCTTCAGCTTGCTCAGCACAAGCCCGTCCAACGTTCTTATATACACAGCCTCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTC] [+] EMBL BI506619 [CTAATTCTATGTCGATGATATGTCGGCTTCAAACAATATTAAAATAATGCAAGCATACAGATTGGCCTATCTGGCCGTCTGACAAATATGAATTTATGGAATAATTTTATAACTTTAATAATCGATCATGGTCAAGGAAAAACCAAATTCAATCCGTATTTACGATTCAGAAGGTTATAGACGTAGAGCTGCATGTATCTGCGTTAAAAACGATCTTGAAGATGAGGTACTTTTGGTTACATCCAGTCGTAGACCTGATAGTTGGATAGTACCTGGTGGAGGTGTTGAACCGGAGGAAGAACCTGCAGTAACAGCATTGCGAGAAGTTCGAGAAGAGGCTGGTGTTTTAGGACAATTAGGCAGATGTCTTGGTATATTTGAGAATGTGGAACACAAACATAGAACACAAGTATGGGTTATGAGAGTAACCGAAGAATTGCCAGAATGGGAAGATTCACGCACTATTGGTCGAAAACGAAAATGGTTCTCTATTCCAGAAGCCTTGCTTCAGCTTGCTCAGCACAAGCCCGTCCAACGTTCTTATATACACAGCCTCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTC] consensusID : consensus_1207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [TCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTCTAGTAACAATCCTCATTTAAACAAACATAGCTAATATTAAATACCATCCATTTGCGTGAACAATTGCTATTGTGTTAGATATTTGTTACTGCTCCTTTTCTTTCATATAGTTATAACAATTAAAAAAGTTATATTTTATATTTAAAATGTACATTCTCTTTTTCTTATTTTTCTTTCCATTCTTTAATCTTTTTTATTTATAGTAAAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTCCAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACTGCACTTGGGCGGGGAACGATACATTCGATACTGTGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATA] [+] EMBL BI506270 [TCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTCTAGTAACAATCCTCATTTAAACAAACATAGCTAATATTAAATACCATCCATTTGCGTGAACAATTGCTATTGTGTTAGATATTTGTTACTGCTCCTTTTCTTTCATATAGTTATAACAATTAAAAAAGTTATATTTTATATTTAAAATGTACATTCTCTTTTTCTTATTTTTCTTTCCATTCTTTAATCTTTTTTATTTATAGTAAAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTCCAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACTGCACTTGGGCGGGGAACGATACATTCGATACTGTGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATA] consensusID : consensus_1207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [GAGACAGAGAGAGAGTTTGAGAAGAAGAATTCGAAGAAAATTTCAATTCGAAGAAAACTTTCGACGATTCTTTATATATAGCGAAATTAGTAGGTCAGTTAGGATCGAAGCATTGATGATTCCGCTTGTCTCTTGACGTAGTAAAATTAACAGGAGAAAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTAACAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACCGCACTTGGGCGGGGAACGATACATTCGATACTNNGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATACT] [+] EMBL BI516455 [GAGACAGAGAGAGAGTTTGAGAAGAAGAATTCGAAGAAAATTTCAATTCGAAGAAAACTTTCGACGATTCTTTATATATAGCGAAATTAGTAGGTCAGTTAGGATCGAAGCATTGATGATTCCGCTTGTCTCTTGACGTAGTAAAATTAACAGGAGAAAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTAACAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACCGCACTTGGGCGGGGAACGATACATTCGATACTNNGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1207#1 -------------------------------------------------------TCCAC 5 consensus_1207#2 ------------------------------------------------------------ consensus_1207#0 CTAATTCTATGTCGATGATATGTCGGCTTCAAACAATATTAAAATAATGCAAGCATACAG 60 consensus_1207#1 AATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTA 65 consensus_1207#2 ------------------------------------------------------------ consensus_1207#0 ATTGGCCTATCTGGCCGTCTGACAAATATGAATTTATGGAATAATTT---TATAACTTTA 117 consensus_1207#1 ACATCTATTCAATTAATGAATAATTCTAGTAACAATCCTCATTTA-AACAAACATAGCTA 124 consensus_1207#2 ------------------------------------------------GAGACAGAGAGA 12 consensus_1207#0 ATAATCGATCATGGTCAAGGAAAAACCAAATTCAATCCGTATTTACGATTCAGAAGGTTA 177 * * * * consensus_1207#1 ---ATATTAAATACCATCCATTTGCGTGAACAATTGCTATTGTGTT-AGATATTTGTTAC 180 consensus_1207#2 ---GAGTTTGAGAAGAAGAATT--CGAAGAAAATTTCAATT-CGAA-GAAAACTTTCGAC 65 consensus_1207#0 TAGACGTAGAGCTGCATGTATCTGCGTTAAAAACGATCTTGAAGATGAGGTACTTTTGGT 237 * * ** ** * ** * * * ** consensus_1207#1 TGCTCCTTTTCTTTCATATAGTTATAACAATTAAAAAAGTTATATTTTATATTTAAAATG 240 consensus_1207#2 GATTCTTTAT-----ATATAGCGA-AATTAGTAGGTCAGTTAGGATCGAAGCAT----TG 115 consensus_1207#0 TACATCCAGTCGTAGACCTGATAGTTG-GATAGTACCTGGTGGAGGTGTTGAACCGGAGG 296 * * * * * * * consensus_1207#1 TACATTCTCTTTTTCTTATTTTTCTTTCCATTCTTTAATCTTTTTTATTTATAGTAAAA- 299 consensus_1207#2 ATGATTCCGCTTGTCTCTTGACGTAGTAAAATTAACAGGAGAAAAAAAAAAAAGAAAAAG 175 consensus_1207#0 AAGAACCTGCAGTAACAGCATTGCGAGAAGTTCGAGAAGAGGCTGGTGTTTTAGGACAAT 356 * * * * ** * ** consensus_1207#1 --AAGAAA------AGAAAACTCGAAAA---AGAAAATGAACCAAAATCGAAGCGGAACA 348 consensus_1207#2 AAAAGAAA------AGAAAACTCGAAAA---AGAAAATGAACCAAAATCGAAGCGGAACA 226 consensus_1207#0 TAGGCAGATGTCTTGGTATATTTGAGAATGTGGAACACAAACATAGAACACAAGTATGGG 416 * * * * * * ** ** *** * *** * * * * consensus_1207#1 CCGTATTTGTC-CAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTA 407 consensus_1207#2 CCGTATTTGTAACAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTA 286 consensus_1207#0 TTATGAGAGTAACCGAAGAATTGCCAGAATGGGAAGATTCACGCACTATTGGTCGAAAAC 476 * ** * * **** ** * * *** * *** * * * consensus_1207#1 CACAGTGAACTGCACTTGGGCGGGGAACGATACATTCGATACTGTGGGACTATTGCACAC 467 consensus_1207#2 CACAGTGAACCGCACTTGGGCGGGGAACGATACATTCGATACTNNGGGACTATTGCACAC 346 consensus_1207#0 GAAAATGGTTCTCTATT---CCAGAAGCCTTGCTTCAGCTTGCTCAGCACAAGCCCGTCC 533 * * ** * ** * * * * * * * * * * ** * * * consensus_1207#1 CTCTTCGCTGTAT-CATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAG 526 consensus_1207#2 CTCTTCGCTGTAT-CATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAG 405 consensus_1207#0 AACGTTCTTATATACACAGCCT--CCACAATACTAATCCTCGACATAATCCTAATATTTC 591 * * * *** ** ** ** ***** * * * **** * *** consensus_1207#1 ATAATACCACGTTGCGTAATATA------------------------------- 549 consensus_1207#2 ATAATACCACGTTGCGTAATATACT----------------------------- 430 consensus_1207#0 ACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTC 645 * ** *** * * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |