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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence
[ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA]
[+] EMBL BI509014 [ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA]
[+] EMBL BI510459 [ GGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCA ]
consensusID : consensus_1220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[AATGCACATTTCAACATCGACATCGTCATTTATCATTGCGAATAAAACGCATCCATCTTCCTTGCCTTGATGAATCTTTACATCACCGAGTTATTTTCCAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGACGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTATTATTCGAACCATTTGCAGTTGTAGTGCTGTCCATAGGATTTCCAAGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGTGTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACCTGCCGTTCGTAAATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAATAGCAGCTCCTAAATTCAAGTTCAAACTT]
[+] EMBL BI514789 [AATGCACATTTCAACATCGACATCGTCATTTATCATTGCGAATAAAACGCATCCATCTTCCTTGCCTTGATGAATCTTTACATCACCGAGTTATTTTCCAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGACGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTATTATTCGAACCATTTGCAGTTGTAGTGCTGTCCATAGGATTTCCAAGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGTGTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACCTGCCGTTCGTAAATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAATAGCAGCTCCTAAATTCAAGTTCAAACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1220#0 ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTA 60
consensus_1220#1 --AATGCACATTTCAACATCGACATCGTCA-TTTATCATTGCGAATAAAACGCATCCATC 57
** * * ** * ** * **** * *** * * ** ** *
consensus_1220#0 AACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAA 120
consensus_1220#1 TTCCTTGCCTTGA----TGAATCTTTACATCACCGAGTT--ATTTTCCAAGTGA-TAACT 110
* * ** * ** * * ** ** *** * ** * *** **
consensus_1220#0 GTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGC 180
consensus_1220#1 GGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGT 170
* ** * **** ** * * ** * * * ** ***
consensus_1220#0 TTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATA 240
consensus_1220#1 TTTGTCTGAATGGATCAAAGGGCTCGT-ATCTGTCAAGT-GTATTACGTGGTGTAGGAGA 228
** *** * **** * * * * * ** ** * ** ***** *
consensus_1220#0 ACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGAT 300
consensus_1220#1 ---CGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTAT---- 281
*** * * * * * ** * ** * ** ***
consensus_1220#0 TTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTC-CCA 359
consensus_1220#1 -----TATTCGAACCATTTGC------AGTTGTAGTGC-----TGTCCATAGGATTTCCA 325
* ** * *** ** * * * ** * *** ** * ***
consensus_1220#0 GAATAGCTCCCACTATAAC-CTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTG 418
consensus_1220#1 AGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGT 385
*** *** * ** ** * * ***** * ** * * ** *
consensus_1220#0 TTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCA 478
consensus_1220#1 GTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACC--TGCCGTTCGTA 443
* ** * * * ** ** ** * **** *
consensus_1220#0 AATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCA 538
consensus_1220#1 AATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAAT-- 501
*** * * ** * * **** * * ** ** * * * * **
consensus_1220#0 AAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA 579
consensus_1220#1 AGCAGCTCCTAAAT-TCAAGTTCAA-ACTT----------- 529
* **** ** * ****** * ** *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |