These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence [ACACTCGCTCTTCTCCATCTCTTGTTGTTTAAAAATCCTCGTCGCGAAGAGTATGATAAATGCCGAAGAGTGAAAACGATCGTTAAATAATTTTTTCTCGAATTATCAATCTCCCCAAGAATCGAACGCGGAAAGAAGAGAAAACGTACGTGTACAACGTGTAATATTGTACGCGGTATGTACATTTGAAATTCATATTTTTGTTTTTTTTTTCTCTCCTCTCTCTTTTTTATATATACATATATATATATTGAGACGTGTTATCGATCTACTTTTCTTTTCTGCTTTTTAGACGTATACGTCTACCGCGTATATGGAATAATGTACAAAATAGGAAAGAAAGCGAGATGACGGGTGCACATTCCATGAATATAATTATACATAACTTATATAAAATAACGAATCTGTTAGCGTTTGTTAAGAGCATCCGAGTAAGATATATTACACGCAAAGATAACAAATGAATAATATATCTAATAAAGTTTGAAAGCTTACGAATAGACTCGGTTCATCATTATCATATATCGTGATTTTTATGTCATGTTCAATAAATGAGTTTTAAAA] [+] EMBL BI515464 [ACACTCGCTCTTCTCCATCTCTTGTTGTTTAAAAATCCTCGTCGCGAAGAGTATGATAAATGCCGAAGAGTGAAAACGATCGTTAAATAATTTTTTCTCGAATTATCAATCTCCCCAAGAATCGAACGCGGAAAGAAGAGAAAACGTACGTGTACAACGTGTAATATTGTACGCGGTATGTACATTTGAAATTCATATTTTTGTTTTTTTTTTCTCTCCTCTCTCTTTTTTATATATACATATATATATATTGAGACGTGTTATCGATCTACTTTTCTTTTCTGCTTTTTAGACGTATACGTCTACCGCGTATATGGAATAATGTACAAAATAGGAAAGAAAGCGAGATGACGGGTGCACATTCCATGAATATAATTATACATAACTTATATAAAATAACGAATCTGTTAGCGTTTGTTAAGAGCATCCGAGTAAGATATATTACACGCAAAGATAACAAATGAATAATATATCTAATAAAGTTTGAAAGC ] [-] EMBL BI516098 [ CGAAGAGTATGATAAATGCCGAAGAGTGAAAACGATCGTTAAATAATTTTTTCTCGAATTATCAATCTCCCCAAGAATCGAACGCGGAAAGAAGAGAAAACGTACGTGTACAACGTGTAATATTGTACGCGGTATGTACATTTGAAATTCATATTTTTGTTTTTTTTTTCTCTCCTCTCTCTTTTTTATATATACATATATATATATTGAGACGTGTTATCGATCTACTTTTCTTTTCTGCTTTTTAGACGTATACGTCTACCGCGTATATGGAATAATGTACAAAATAGGAAAGAAAGCGAGATGACGGGTGCACATTCCATGAATATAATTATACATAACTTATATAAAATAACGAATCTGTTAGCGTTTGTTAAGAGCATCCGAGTAAGATATATTACACGCAAAGATAACAAATGAATAATATATCTAATAAAGTTTGAAAGCTTACGAATAGACTCGGTTCATCATTATCATATATCGTGATTTTTATGTCATGTTCAATAAATGAGTTTTAAAA] consensusID : consensus_1221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GTGAAAACGATCGTTAAATAATTTTTTTCTCGAATTATCAATCTCCCCAAGAATCGAACGCGGAAAGAAGAGAAAACGTACGTGTACAACGTGTAATATTGTACGCGGTATGAACATTTGAAATTCATATTTTGGTTTTTTTTTTCTCTCCTCTCTCTTTTGGAGAGAAATATATATATATATATATATATATATATATATTGAGACGTGTTATCGATCAACTTTTCTTTTCTGCTTTTTAGACGTAAACGTCTACCGCGTATATGGAATAATGTACAAAATAGGAAAGAAAGCGAGATGACGGGTGCACATTCCATGAATATAATTAAACATAACTTATATAAAATAACGAATCTGTTAGCGTTTGTTAAGAGCATCCGAGTAAGATATATTACACGCAAAGATAACAAACGAATAATATATCTAATAAAGTTTGAAAGCTTACGAATAGACTCGGTTCATCATTATCATATATCGTGATTTTTATGTCATGTTCAATAAATGAGTTTTAAAATAAAAAAAAAAAAAAAAAAAAA] [-] EMBL BE844276 [GTGAAAACGATCGTTAAATAATTTTTTTCTCGAATTATCAATCTCCCCAAGAATCGAACGCGGAAAGAAGAGAAAACGTACGTGTACAACGTGTAATATTGTACGCGGTATGAACATTTGAAATTCATATTTTGGTTTTTTTTTTCTCTCCTCTCTCTTTTGGAGAGAAATATATATATATATATATATATATATATATATTGAGACGTGTTATCGATCAACTTTTCTTTTCTGCTTTTTAGACGTAAACGTCTACCGCGTATATGGAATAATGTACAAAATAGGAAAGAAAGCGAGATGACGGGTGCACATTCCATGAATATAATTAAACATAACTTATATAAAATAACGAATCTGTTAGCGTTTGTTAAGAGCATCCGAGTAAGATATATTACACGCAAAGATAACAAACGAATAATATATCTAATAAAGTTTGAAAGCTTACGAATAGACTCGGTTCATCATTATCATATATCGTGATTTTTATGTCATGTTCAATAAATGAGTTTTAAAATAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1221#0 ACACTCGCTCTTCTCCATCTCTTGTTGTTTAAAAATCCTCGTCGCGAAGAGTATGATAAA 60 consensus_1221#1 ------------------------------------------------------------ consensus_1221#0 TGCCGAAGAGTGAAAACGATCGTTAAATAATTTTTT-CTCGAATTATCAATCTCCCCAAG 119 consensus_1221#1 ---------GTGAAAACGATCGTTAAATAATTTTTTTCTCGAATTATCAATCTCCCCAAG 51 *************************** *********************** consensus_1221#0 AATCGAACGCGGAAAGAAGAGAAAACGTACGTGTACAACGTGTAATATTGTACGCGGTAT 179 consensus_1221#1 AATCGAACGCGGAAAGAAGAGAAAACGTACGTGTACAACGTGTAATATTGTACGCGGTAT 111 ************************************************************ consensus_1221#0 GTACATTTGAAATTCATATTTTTGTTTTTTTTTTCTCTCCTCTCTCTTTTT--------- 230 consensus_1221#1 GAACATTTGAAATTCATATTTTGGTTTTTTTTTTCTCTCCTCTCTCTTTTGGAGAGAAAT 171 * ******************** *************************** consensus_1221#0 ---------TATATATACATATATATATATTGAGACGTGTTATCGATCTACTTTTCTTTT 281 consensus_1221#1 ATATATATATATATATATATATATATATATTGAGACGTGTTATCGATCAACTTTTCTTTT 231 ******** ****************************** *********** consensus_1221#0 CTGCTTTTTAGACGTATACGTCTACCGCGTATATGGAATAATGTACAAAATAGGAAAGAA 341 consensus_1221#1 CTGCTTTTTAGACGTAAACGTCTACCGCGTATATGGAATAATGTACAAAATAGGAAAGAA 291 **************** ******************************************* consensus_1221#0 AGCGAGATGACGGGTGCACATTCCATGAATATAATTATACATAACTTATATAAAATAACG 401 consensus_1221#1 AGCGAGATGACGGGTGCACATTCCATGAATATAATTAAACATAACTTATATAAAATAACG 351 ************************************* ********************** consensus_1221#0 AATCTGTTAGCGTTTGTTAAGAGCATCCGAGTAAGATATATTACACGCAAAGATAACAAA 461 consensus_1221#1 AATCTGTTAGCGTTTGTTAAGAGCATCCGAGTAAGATATATTACACGCAAAGATAACAAA 411 ************************************************************ consensus_1221#0 TGAATAATATATCTAATAAAGTTTGAAAGCTTACGAATAGACTCGGTTCATCATTATCAT 521 consensus_1221#1 CGAATAATATATCTAATAAAGTTTGAAAGCTTACGAATAGACTCGGTTCATCATTATCAT 471 *********************************************************** consensus_1221#0 ATATCGTGATTTTTATGTCATGTTCAATAAATGAGTTTTAAAA----------------- 564 consensus_1221#1 ATATCGTGATTTTTATGTCATGTTCAATAAATGAGTTTTAAAATAAAAAAAAAAAAAAAA 531 ******************************************* consensus_1221#0 ----- consensus_1221#1 AAAAA 536 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |