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Apis mellifera
cluster # 1226 cluster # 1226       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1226#0 length = 562 sequences # 2  
 consensus_1226#1 length = 398 sequences # 1  
consensusID : consensus_1226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 562
fasta sequence 
                              [TTTTTTTTGTTTAGCTTTATTACGGAACTGTGCTGCTACGTAATTCGTGTAATGAAAATTCTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTCGTTATAAAACACTTCCTTTCCCTCCTCCACGGAGGGCAACAGCTCGTCCATGGAATGAGGCGTTCTAGGGCTGGGCGTGGGCGCGATCTGCTGCTGCTGCTCCCGCTGCTGTTGCTCCCGTTGTTTCGCCAATCTCAACTCCTGCAAAGCTTGCCTCTGCTCCTTCTCGTTCCTCTCCTTCTCGAGCCGTCTCGCGCTGTAACTTCGCGCCGAGGACGTCGAACTGT]

[-] EMBL BI510194             [TTTTTTTTGTTTAGCTTTATTACGGAACTGTGCTGCTACGTAATTCGTGTAATGAAAATTCTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTCGTTATAAAACACTTCCTTTCCCTCCTCCACGGAGGGCAACA                                                                                                                                                                                          ]
[+] EMBL BI514753             [                           CTGTGCTGCTACGTAATTCGTGTAATGAAAATTCTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTCGTTATAAAACACTTCCTTTCCCTCCTCCACGGAGGGCAACAGCTCGTCCATGGAATGAGGCGTTCTAGGGCTGGGCGTGGGCGCGATCTGCTGCTGCTGCTCCCGCTGCTGTTGCTCCCGTTGTTTCGCCAATCTCAACTCCTGCAAAGCTTGCCTCTGCTCCTTCTCGTTCCTCTCCTTCTCGAGCCGTCTCGCGCTGTAACTTCGCGCCGAGGACGTCGAACTGT]




>consensus_1226#0
TTTTTTTTGTTTAGCTTTATTACGGAACTGTGCTGCTACGTAATTCGTGTAATGAAAATT
CTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTT
ATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTG
GCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATT
TCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTT
TCCTCGATCATGTCCGACGTCGTCGGCACCTGCTCGTTATAAAACACTTCCTTTCCCTCC
TCCACGGAGGGCAACAGCTCGTCCATGGAATGAGGCGTTCTAGGGCTGGGCGTGGGCGCG
ATCTGCTGCTGCTGCTCCCGCTGCTGTTGCTCCCGTTGTTTCGCCAATCTCAACTCCTGC
AAAGCTTGCCTCTGCTCCTTCTCGTTCCTCTCCTTCTCGAGCCGTCTCGCGCTGTAACTT
CGCGCCGAGGACGTCGAACTGT

consensusID : consensus_1226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence 
                              [TTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTGATGTTTCNAAACATTTCAAGTTAGAATTCGTAATTTAATTCGTTACACGGACAGAGATGTTAAAAAAAATTCCATCCATCCGTTCGTTCACAATTACGCGTAATTCTTCGAATCTGCAAAAGGATGATGCAACGAACGATGAAATTTAGNGAGCAAAAGTTTTCAACCGTAACTCTTT]

[+] EMBL BI516753             [TTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTGATGTTTCNAAACATTTCAAGTTAGAATTCGTAATTTAATTCGTTACACGGACAGAGATGTTAAAAAAAATTCCATCCATCCGTTCGTTCACAATTACGCGTAATTCTTCGAATCTGCAAAAGGATGATGCAACGAACGATGAAATTTAGNGAGCAAAAGTTTTCAACCGTAACTCTTT]




>consensus_1226#1
TTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCAC
CGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAG
CCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCG
ACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTGATGTTTCNAAACATTTCAAG
TTAGAATTCGTAATTTAATTCGTTACACGGACAGAGATGTTAAAAAAAATTCCATCCATC
CGTTCGTTCACAATTACGCGTAATTCTTCGAATCTGCAAAAGGATGATGCAACGAACGAT
GAAATTTAGNGAGCAAAAGTTTTCAACCGTAACTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1226#0      TTTTTTTTGTTTAGCTTTATTACGGAACTGTGCTGCTACGTAATTCGTGTAATGAAAATT 60
consensus_1226#1      ------------------------------------------------------------
                                                                                  

consensus_1226#0      CTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTT 120
consensus_1226#1      -------------------------------------------------------TTGTT 5
                                                                             *****

consensus_1226#0      ATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTG 180
consensus_1226#1      ATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTG 65
                      ************************************************************

consensus_1226#0      GCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATT 240
consensus_1226#1      GCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATT 125
                      ************************************************************

consensus_1226#0      TCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTT 300
consensus_1226#1      TCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTT 185
                      ************************************************************

consensus_1226#0      TCCTCGATCATGTCCGACGTCGTCGGCACCTGCT--CGTTATAAAACACTTCCTTTCCCT 358
consensus_1226#1      TCCTCGATCATGTCCGACGTCGTCGGCACCTGCTGATGTTTCNAAACATTTCAAGTTAGA 245
                      **********************************   ***   ***** ***   *    

consensus_1226#0      CCTCCACGGAGGGCAACAGCTCGTC-CATGGAATGAGGCGTTCTAGGGCTGGGCGTGGGC 417
consensus_1226#1      ATTC------GTAATTTAATTCGTTACACGGACAGAGATGTTAAAAAAAATTCCATCCAT 299
                        **      *      *  ****  ** ***  ***  ***  *        * *    

consensus_1226#0      GCGATCTGCTGCTGCTGCTCCCGCTGCTGTTGCTCCCGTTGTTTCGCCAATCTCAACTCC 477
consensus_1226#1      CCGTTCGTTCACAATTACGCGTAATTCT-TCGAATCTGCAAAAG-GATGATGCAACGAAC 357
                       ** **     *   * * *    * ** * *   * *       *   **   *    *

consensus_1226#0      TGCAAAGCTT-GCCTCTGCTCCTTCTCGTTCCTCTCCTTCTCGAGCCGTCTCGCGCTGTA 536
consensus_1226#1      GATGAAATTTAGNGAGCAAAAGTTTTCAACCGTAACTCTTT------------------- 398
                          **  ** *          ** **   * *  *  * *                   

consensus_1226#0      ACTTCGCGCCGAGGACGTCGAACTGT 562
consensus_1226#1      --------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)