These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 562 fasta sequence [TTTTTTTTGTTTAGCTTTATTACGGAACTGTGCTGCTACGTAATTCGTGTAATGAAAATTCTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTCGTTATAAAACACTTCCTTTCCCTCCTCCACGGAGGGCAACAGCTCGTCCATGGAATGAGGCGTTCTAGGGCTGGGCGTGGGCGCGATCTGCTGCTGCTGCTCCCGCTGCTGTTGCTCCCGTTGTTTCGCCAATCTCAACTCCTGCAAAGCTTGCCTCTGCTCCTTCTCGTTCCTCTCCTTCTCGAGCCGTCTCGCGCTGTAACTTCGCGCCGAGGACGTCGAACTGT] [-] EMBL BI510194 [TTTTTTTTGTTTAGCTTTATTACGGAACTGTGCTGCTACGTAATTCGTGTAATGAAAATTCTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTCGTTATAAAACACTTCCTTTCCCTCCTCCACGGAGGGCAACA ] [+] EMBL BI514753 [ CTGTGCTGCTACGTAATTCGTGTAATGAAAATTCTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTCGTTATAAAACACTTCCTTTCCCTCCTCCACGGAGGGCAACAGCTCGTCCATGGAATGAGGCGTTCTAGGGCTGGGCGTGGGCGCGATCTGCTGCTGCTGCTCCCGCTGCTGTTGCTCCCGTTGTTTCGCCAATCTCAACTCCTGCAAAGCTTGCCTCTGCTCCTTCTCGTTCCTCTCCTTCTCGAGCCGTCTCGCGCTGTAACTTCGCGCCGAGGACGTCGAACTGT] consensusID : consensus_1226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTGATGTTTCNAAACATTTCAAGTTAGAATTCGTAATTTAATTCGTTACACGGACAGAGATGTTAAAAAAAATTCCATCCATCCGTTCGTTCACAATTACGCGTAATTCTTCGAATCTGCAAAAGGATGATGCAACGAACGATGAAATTTAGNGAGCAAAAGTTTTCAACCGTAACTCTTT] [+] EMBL BI516753 [TTGTTATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTGGCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATTTCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTTTCCTCGATCATGTCCGACGTCGTCGGCACCTGCTGATGTTTCNAAACATTTCAAGTTAGAATTCGTAATTTAATTCGTTACACGGACAGAGATGTTAAAAAAAATTCCATCCATCCGTTCGTTCACAATTACGCGTAATTCTTCGAATCTGCAAAAGGATGATGCAACGAACGATGAAATTTAGNGAGCAAAAGTTTTCAACCGTAACTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1226#0 TTTTTTTTGTTTAGCTTTATTACGGAACTGTGCTGCTACGTAATTCGTGTAATGAAAATT 60 consensus_1226#1 ------------------------------------------------------------ consensus_1226#0 CTTCCTCGTCCCTTCTCACTAGTAGCTCGTACCGTTCGACTCGAGTCACGGTGAGTTGTT 120 consensus_1226#1 -------------------------------------------------------TTGTT 5 ***** consensus_1226#0 ATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTG 180 consensus_1226#1 ATATTAGTTCGTCGATTAATTATGTATGTCCTTAACTACACTTGAAAAATGTCACCGGTG 65 ************************************************************ consensus_1226#0 GCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATT 240 consensus_1226#1 GCGCGGGGCGCGATGTTCGTTTCGAAGATGGACGTTGTCGAGGTTGTGACGGGAGCCATT 125 ************************************************************ consensus_1226#0 TCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTT 300 consensus_1226#1 TCGCCGAATCTGCTCGCGTTTATGTTGGTTGTCGTTACGGCCGTTGTTTTCATCGACGTT 185 ************************************************************ consensus_1226#0 TCCTCGATCATGTCCGACGTCGTCGGCACCTGCT--CGTTATAAAACACTTCCTTTCCCT 358 consensus_1226#1 TCCTCGATCATGTCCGACGTCGTCGGCACCTGCTGATGTTTCNAAACATTTCAAGTTAGA 245 ********************************** *** ***** *** * consensus_1226#0 CCTCCACGGAGGGCAACAGCTCGTC-CATGGAATGAGGCGTTCTAGGGCTGGGCGTGGGC 417 consensus_1226#1 ATTC------GTAATTTAATTCGTTACACGGACAGAGATGTTAAAAAAAATTCCATCCAT 299 ** * * **** ** *** *** *** * * * consensus_1226#0 GCGATCTGCTGCTGCTGCTCCCGCTGCTGTTGCTCCCGTTGTTTCGCCAATCTCAACTCC 477 consensus_1226#1 CCGTTCGTTCACAATTACGCGTAATTCT-TCGAATCTGCAAAAG-GATGATGCAACGAAC 357 ** ** * * * * * ** * * * * * ** * * consensus_1226#0 TGCAAAGCTT-GCCTCTGCTCCTTCTCGTTCCTCTCCTTCTCGAGCCGTCTCGCGCTGTA 536 consensus_1226#1 GATGAAATTTAGNGAGCAAAAGTTTTCAACCGTAACTCTTT------------------- 398 ** ** * ** ** * * * * * consensus_1226#0 ACTTCGCGCCGAGGACGTCGAACTGT 562 consensus_1226#1 -------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |