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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 844 fasta sequence
[TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATCTGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGCAGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTTTGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGTGGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGAAAAGAAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGAAAAACTCAATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAAAAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATATATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATTCAAACATGCCCAAACATA]
[+] EMBL BI506917 [TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATCTGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGCAGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTTTGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGTGGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGA ]
[+] EMBL BI509446 [ AATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGAAAAGAAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGAAAAACTCAATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAAAAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATATATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATTCAAACATGCCCAAACATA]
consensusID : consensus_1227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[AGATCAATTGGTGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTCTTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTTCGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATGTTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGATCAAATTAACAAAGAAGATAGTTTTAAAGCTGTTGTTGATTACATAGATGCTCAATTTGAAGCATATTTACAAGAAGAATTAAAGATAAAACGATCTTTGGCAACTTATCACGATAGTCGTATTCATGTTTGCTTGTATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTGATCTAGTCTGTATGAAGAAACTTGACACAAAAGTTAATATTATACCAATTATTGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA]
[+] EMBL BI510310 [AGATCAATTGGTGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTCTTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTTCGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATGTTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGATCAAATTAACAAAGAAGATAGTTTTAAAGCTGTTGTTGATTACATAGATGCTCAATTTGAAGCATATTTACAAGAAGAATTAAAGATAAAACGATCTTTGGCAACTTATCACGATAGTCGTATTCATGTTTGCTTGTATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTGATCTAGTCTGTATGAAGAAACTTGACACAAAAGTTAATATTATACCAATTATTGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1227#0 TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATC 60
consensus_1227#1 ------------------------------------------------------------
consensus_1227#0 TGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGC 120
consensus_1227#1 ------------------------------------------------------------
consensus_1227#0 AGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTT 180
consensus_1227#1 ------------------------------------------------------------
consensus_1227#0 TGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGT 240
consensus_1227#1 ------------------------------------------------------------
consensus_1227#0 GGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATAT 300
consensus_1227#1 -------------------------------------------------AGATCAATTGG 11
** *** *
consensus_1227#0 GGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGAT- 359
consensus_1227#1 TGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTC 71
*** * ** ** * ** * ***** * * *** * *** * **** * *
consensus_1227#0 TAGAACAGATGGGTTTTAGTGATGTTGA---TAGTGAAAAT----AAACCAGTTAGTTTT 412
consensus_1227#1 TTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTT 131
* * * ** * *** *** * ** * ** * ** * * * **
consensus_1227#0 CAACAAACCTGCGAAGCAAAAAGATCCATAC--ATTTGCAAGAACTTCAACAAAAAGAAG 470
consensus_1227#1 CGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATG 191
* ** ** * *** ** * * ** * *** * *** *** * *
consensus_1227#0 ATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAG 530
consensus_1227#1 TTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGA--TCAAATTAACAAA-- 247
* * ** ** * * ** * *** * * *** ****** * *
consensus_1227#0 CGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCA-TACAGAGGAAAAG 589
consensus_1227#1 ---GAAGATAGTTTTAAAGCTG--TTGTTGATTACATAGATGCTCAATTTGAAGCATATT 302
** * ** ** * * * * * * * * * * *** * ** * *
consensus_1227#0 AAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGA 649
consensus_1227#1 TACAAGAAGAATTAAAGATAAAACGATCTT-----TGGCAACTTATCA--CGATAGTCGT 355
* *** * * **** *** * ** ** * *** * * **** **
consensus_1227#0 AAAACTCA-ATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAA 708
consensus_1227#1 ---ATTCATGTTTGCTTG--TATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTG 410
* *** ** *** * *** ** * *** ***** ***
consensus_1227#0 AAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATA-- 766
consensus_1227#1 ---ATCTAGTCTG-TATGAAGA-AACTTGACACAAAAGTTAATATTATACCAATTATTGC 465
** * *** ** ** * ** * * ** * * ** *** * * ***
consensus_1227#0 TATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATT 826
consensus_1227#1 TAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA------- 518
** ** ** ** * *** * ** * ** *** * ******
consensus_1227#0 CAAACATGCCCAAACATA 844
consensus_1227#1 ------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |